genome.fa.s7.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  162  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55401333--55401375	15	2.9	15	92	0	68	16	13	13	55	1.69
55401332--55401414	15	5.5	15	69	8	53	13	19	15	51	1.75
55401982--55402010	15	2.0	15	93	6	51	10	13	20	55	1.68
55408095--55408211	55	2.1	55	90	0	180	20	18	31	29	1.97
55409854--55409882	14	2.0	15	93	6	51	51	20	0	27	1.47
55410329--55410379	17	2.9	18	82	8	61	25	0	25	49	1.51
55410617--55410641	8	3.1	8	100	0	50	28	0	24	48	1.52
55420677--55420796	41	2.9	42	88	3	172	17	20	26	35	1.95
55420681--55420817	41	3.3	41	84	7	163	19	20	24	35	1.96
55423597--55423772	46	3.8	46	79	12	216	21	20	28	29	1.98
55423593--55423764	93	1.8	93	94	0	308	20	20	29	28	1.98
55432542--55432707	78	2.1	79	96	2	307	31	18	3	46	1.66
55433803--55433993	46	4.2	46	84	5	151	21	22	15	39	1.91
55433826--55434007	46	4.0	46	90	1	267	23	23	14	38	1.92
55437405--55437450	23	2.0	23	95	0	83	26	28	13	32	1.93
55438898--55439075	27	6.6	27	84	3	205	29	28	15	26	1.96
55438919--55439074	82	1.9	81	88	3	233	29	28	15	26	1.96
55447779--55447829	27	1.9	26	84	4	66	17	27	19	35	1.94
55454239--55454292	28	1.9	28	96	0	99	37	24	12	25	1.91
55457290--55457418	49	2.6	48	84	7	154	24	31	17	27	1.97
55457432--55457604	46	3.7	46	77	4	150	24	29	18	27	1.98
55457480--55457604	47	2.7	46	79	14	148	25	30	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55465220--55465269	26	1.9	26	87	0	73	44	10	0	46	1.37
55465885--55465940	21	2.8	19	79	12	51	53	0	5	41	1.24
55469173--55469205	17	1.9	17	88	11	50	75	3	21	0	0.93
55469211--55469262	21	2.7	19	80	13	61	69	0	21	9	1.17
55469211--55469291	18	4.3	18	73	17	67	64	2	20	12	1.39
55469813--55469858	19	2.3	21	85	14	62	17	15	23	43	1.87
55477057--55477270	44	4.9	45	79	10	230	30	26	17	25	1.97
55477057--55477270	89	2.5	86	80	8	231	30	26	17	25	1.97
55483814--55483857	5	8.8	5	100	0	88	20	0	0	79	0.73
55492067--55492113	18	2.5	19	86	13	62	53	4	4	38	1.40
55492079--55492117	18	2.2	18	90	9	62	56	2	5	35	1.35
55494988--55495135	2	74.5	2	98	1	289	0	49	0	50	1.00
55498951--55498984	17	2.0	17	94	0	59	44	50	0	5	1.26
55500679--55500708	11	2.7	11	94	0	51	0	10	0	90	0.47
55500679--55500708	16	1.9	15	93	6	51	0	10	0	90	0.47
55509451--55509504	25	2.2	25	93	0	90	38	24	16	20	1.92
55510963--55511019	28	2.0	28	100	0	114	24	21	14	40	1.90
55515680--55515850	94	1.8	92	83	7	229	26	30	16	26	1.97
55515647--55515847	46	4.4	45	77	10	167	25	30	16	26	1.97
55517985--55518226	125	1.9	125	91	0	394	20	24	28	26	1.99
55519397--55519448	25	2.1	25	100	0	104	36	15	15	32	1.89
55523942--55524210	46	5.8	46	73	16	223	21	18	29	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55523998--55524156	47	3.4	47	74	14	175	22	17	29	30	1.97
55523952--55524203	93	2.7	93	91	1	416	21	18	29	29	1.97
55526529--55526720	40	4.8	40	80	0	222	27	27	20	24	1.99
55526501--55526721	80	2.8	79	88	2	309	27	27	20	24	1.99
55530476--55530533	30	2.0	29	93	3	98	10	13	15	60	1.59
55530480--55530534	15	3.8	14	79	9	65	9	12	16	61	1.55
55532994--55533262	46	5.8	46	71	17	198	21	19	28	29	1.98
55533040--55533208	47	3.6	47	70	13	159	23	18	27	30	1.98
55533004--55533255	93	2.7	93	89	3	400	22	18	29	29	1.97
55546548--55546687	39	3.6	39	87	1	192	38	23	24	13	1.91
55562906--55562990	42	2.0	42	93	0	143	27	14	22	36	1.92
55566653--55566825	48	3.6	49	83	4	210	31	23	16	28	1.96
55566689--55566836	48	3.1	48	88	0	215	29	23	17	29	1.97
55567399--55567439	21	1.9	22	85	14	59	36	26	2	34	1.70
55569026--55569056	15	2.1	15	100	0	62	29	12	12	45	1.80
55573350--55573524	46	3.8	46	76	7	201	29	26	21	23	1.99
55578115--55578279	43	3.8	43	73	10	149	24	16	26	31	1.97
55581214--55581397	40	4.6	40	77	10	189	23	27	23	25	2.00
55581181--55581361	79	2.3	79	81	7	215	24	25	21	28	1.99
55591018--55591107	29	3.1	28	89	7	137	27	13	28	30	1.94
55594518--55594610	42	2.2	42	81	12	111	24	15	25	34	1.94
55595519--55595590	33	2.1	34	85	7	94	26	29	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55595563--55595618	28	2.0	28	85	0	76	28	25	21	25	1.99
55595519--55595622	33	3.3	31	74	19	90	26	27	21	24	1.99
55603292--55603359	24	2.8	25	82	8	88	33	17	25	23	1.96
55604101--55604130	14	2.1	14	93	0	51	50	16	26	6	1.70
55617948--55618037	40	2.2	40	78	3	101	31	17	17	33	1.94
55626482--55626736	126	2.0	127	99	0	503	32	15	27	24	1.96
55627016--55627098	42	2.0	42	97	0	157	28	22	16	31	1.96
55627093--55627277	79	2.3	80	88	6	261	25	28	22	23	2.00
55627093--55627277	40	4.7	40	91	5	261	25	28	22	23	2.00
55629032--55629107	38	2.0	38	100	0	152	31	13	23	31	1.93
55630294--55630474	40	4.6	40	80	7	181	25	24	25	23	2.00
55631639--55632244	303	2.0	303	99	0	1185	26	16	25	32	1.96
55633045--55633087	22	1.9	23	81	13	54	44	6	34	13	1.72
55634634--55634764	40	3.3	40	81	4	151	25	24	25	23	2.00
55636214--55636565	48	7.3	48	80	7	437	36	27	11	25	1.90
55636244--55636614	24	15.5	24	76	9	328	36	26	11	24	1.90
55636214--55636613	96	4.2	96	96	0	710	36	27	11	25	1.90
55636214--55636614	48	8.4	48	76	3	369	36	26	11	24	1.90
55639191--55639552	180	2.0	180	98	0	697	27	20	12	39	1.89
55640257--55640440	79	2.3	81	82	11	222	25	27	22	25	2.00
55640257--55640440	40	4.6	41	83	12	199	25	27	22	25	2.00
55663880--55663908	5	5.8	5	100	0	58	79	0	0	20	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55664965--55665022	30	1.9	30	85	0	80	22	25	27	24	2.00
55667709--55667823	55	2.1	56	80	8	128	35	22	23	18	1.95
55667734--55667823	28	3.2	27	81	7	101	33	24	23	18	1.97
55667930--55668244	28	11.2	28	98	0	603	32	7	25	34	1.84
55675892--55675973	27	3.0	27	85	7	112	31	21	25	20	1.98
55676081--55676142	28	2.2	28	94	0	106	30	8	29	32	1.86
55678169--55678274	42	2.5	43	79	14	112	35	20	15	28	1.93
55684122--55684165	22	2.0	22	100	0	88	36	22	13	27	1.92
55687495--55688025	266	2.0	266	98	0	1026	29	9	35	26	1.87
55692869--55693003	55	2.5	55	76	4	139	31	27	25	15	1.96
55697590--55697739	42	3.5	42	81	8	169	35	25	15	24	1.94
55703107--55703171	33	2.0	33	87	0	94	36	27	6	29	1.81
55703962--55704043	41	2.0	41	97	0	155	34	20	12	32	1.90
55705297--55705381	42	2.0	44	86	9	122	37	23	16	22	1.93
55705708--55705747	14	2.5	17	80	15	50	35	25	2	37	1.69
55707422--55707466	22	2.0	22	87	8	65	44	4	0	51	1.21
55707823--55707862	20	2.0	20	85	0	53	20	7	2	70	1.24
55719472--55719506	3	11.7	3	93	0	61	68	0	31	0	0.90
55721680--55721712	16	2.1	16	88	11	50	42	9	0	48	1.35
55732358--55732535	52	3.5	51	82	7	204	28	14	28	28	1.95
55732358--55732535	51	3.5	49	82	6	187	28	14	28	28	1.95
55738010--55738055	16	3.1	14	82	14	56	69	6	0	23	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55738000--55738064	26	2.5	26	82	9	80	70	6	0	23	1.09
55763664--55763742	37	2.1	37	85	0	104	25	17	30	26	1.97
55767029--55767076	25	1.9	25	87	8	71	54	14	10	20	1.70
55769402--55769444	19	2.2	19	91	4	68	44	20	18	16	1.87
55775452--55775513	25	2.5	25	86	5	90	32	20	19	27	1.97
55780234--55780279	3	15.3	3	100	0	92	32	32	0	34	1.58
55782582--55782695	27	4.2	26	82	4	84	40	17	9	32	1.82
55782681--55782742	27	2.3	27	88	0	88	35	29	6	29	1.82
55782692--55782885	27	6.8	27	77	13	129	28	25	7	38	1.83
55782692--55782885	54	3.4	54	73	13	163	28	25	7	38	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290