genome.fa.s7.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  95  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32002504--32002658	38	4.0	38	86	1	202	34	24	20	20	1.96
32010576--32010765	38	4.9	38	79	3	184	31	24	20	24	1.98
32010576--32010765	76	2.5	78	80	3	204	31	24	20	24	1.98
32037900--32037981	42	1.9	43	82	7	105	36	24	15	23	1.94
32039629--32039698	28	2.5	28	90	4	106	32	27	12	27	1.93
32047544--32047613	28	2.5	28	88	9	99	31	27	14	27	1.95
32057764--32057803	15	2.6	16	84	4	55	15	7	0	77	0.98
32065310--32065421	27	4.1	27	77	4	109	32	18	19	29	1.96
32065310--32065421	54	2.1	54	81	6	129	32	18	19	29	1.96
32065557--32065640	27	3.2	26	77	1	87	23	22	19	34	1.96
32066112--32066243	53	2.5	53	80	5	140	34	18	26	21	1.96
32070034--32070093	27	2.3	26	82	2	66	36	20	21	21	1.95
32070134--32070185	27	2.0	26	84	3	68	34	21	26	17	1.95
32073640--32073952	46	6.6	44	75	13	184	24	29	18	27	1.98
32073692--32073960	94	2.9	92	77	13	273	24	30	17	26	1.97
32077730--32077786	28	2.0	28	96	0	105	42	5	10	42	1.62
32078526--32078594	27	2.6	27	90	2	104	28	20	20	30	1.97
32078543--32078601	27	2.2	27	93	0	100	30	20	15	33	1.93
32079851--32079877	10	2.7	10	100	0	54	62	0	7	29	1.22
32087851--32087909	29	2.0	30	90	3	93	37	8	25	28	1.85
32091453--32091503	19	2.9	17	81	13	59	37	9	17	35	1.83
32091463--32091505	19	2.1	21	91	8	72	37	9	18	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32103890--32103958	34	2.0	34	94	0	120	27	10	23	39	1.87
32107857--32107884	11	2.5	11	100	0	56	92	0	7	0	0.37
32108768--32109983	44	27.3	44	70	12	680	31	18	23	26	1.97
32108768--32109299	132	4.0	132	93	0	902	31	17	24	26	1.97
32109257--32109978	132	5.3	132	87	5	1003	32	17	22	27	1.97
32108861--32109983	264	4.2	263	82	8	949	31	18	23	26	1.97
32109426--32109459	16	2.1	16	88	5	50	23	32	17	26	1.97
32108942--32109931	500	2.0	500	86	3	1404	31	18	23	26	1.97
32110555--32110652	19	5.2	19	87	7	146	36	9	17	36	1.82
32110561--32110652	36	2.4	38	89	7	134	36	9	16	36	1.82
32111155--32111204	26	2.0	25	84	4	64	18	6	10	66	1.42
32114342--32114466	43	2.9	43	84	5	139	24	18	24	32	1.97
32133015--32133160	43	3.4	44	83	5	174	26	14	25	33	1.94
32134382--32134651	48	5.6	48	88	0	398	24	18	28	28	1.98
32147010--32147219	40	5.3	39	87	5	233	24	21	28	25	1.99
32146957--32147219	120	2.2	120	81	4	300	25	21	27	25	1.99
32147010--32147254	80	3.1	80	81	3	228	25	21	28	24	1.99
32154961--32155252	40	7.3	40	91	3	403	25	21	28	24	1.99
32154961--32155285	80	4.1	80	86	3	229	26	21	28	23	1.99
32169205--32169372	43	4.0	43	82	4	180	32	26	16	25	1.96
32186748--32186941	49	3.9	49	78	6	185	28	25	20	25	1.99
32186759--32186888	50	2.6	49	87	3	172	30	26	19	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32189114--32189177	15	4.4	15	74	20	55	62	14	14	9	1.54
32189847--32190509	329	2.0	330	98	0	1292	34	7	19	38	1.80
32191355--32191689	46	7.3	46	90	4	514	22	19	28	29	1.98
32193419--32193635	40	5.5	40	87	4	289	24	28	22	24	1.99
32196038--32196127	45	2.0	45	97	0	171	27	13	25	33	1.93
32197896--32197939	15	2.9	15	80	12	54	11	15	15	56	1.66
32200337--32200512	46	3.8	46	77	5	185	21	19	28	30	1.97
32200334--32200503	93	1.8	93	89	2	270	21	20	29	28	1.98
32200659--32200805	73	2.0	73	97	0	276	36	14	21	27	1.93
32203515--32203570	15	3.7	15	83	7	78	12	14	12	60	1.59
32205966--32206141	46	3.8	44	81	10	201	21	20	29	28	1.98
32205963--32206133	93	1.8	93	93	0	297	21	21	29	28	1.98
32217937--32218006	27	2.6	27	90	2	104	30	28	14	27	1.95
32218880--32219353	237	2.0	237	99	0	939	37	25	7	28	1.83
32219244--32219639	200	2.0	200	98	0	765	38	24	8	28	1.84
32219640--32219839	100	2.0	100	100	0	400	21	24	18	37	1.94
32220537--32220566	13	2.3	13	94	0	51	43	3	16	36	1.65
32222783--32222838	15	3.7	15	83	7	78	12	17	10	58	1.61
32228998--32229131	49	2.7	50	85	4	164	29	27	17	25	1.98
32229010--32229185	50	3.5	49	80	9	169	29	26	18	25	1.98
32235327--32235429	28	3.7	28	93	0	161	29	23	11	35	1.90
32248305--32248343	21	2.0	19	85	14	53	23	25	33	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32275355--32275391	18	2.1	19	90	10	60	21	37	24	16	1.93
32278541--32278593	26	2.0	26	85	7	72	35	18	24	20	1.95
32278594--32278766	27	6.4	27	83	2	186	26	19	19	35	1.95
32285465--32285516	27	2.0	26	84	3	68	34	21	26	17	1.95
32286167--32286339	27	6.4	27	87	2	222	25	22	17	34	1.96
32286167--32286339	54	3.2	54	86	0	247	25	22	17	34	1.96
32287702--32287826	41	3.0	41	77	10	119	32	28	15	24	1.95
32287688--32287863	43	4.2	42	77	6	151	33	28	14	23	1.94
32305225--32305418	49	3.9	49	78	6	185	28	25	20	25	1.99
32305236--32305365	50	2.6	49	87	3	172	30	26	19	24	1.98
32307550--32307613	15	4.4	15	74	20	55	62	14	14	9	1.54
32308832--32308969	72	1.9	72	89	0	213	31	5	22	41	1.75
32309639--32309815	46	3.8	45	78	10	187	22	19	28	29	1.98
32309636--32309806	93	1.8	93	91	0	279	21	20	29	28	1.98
32311545--32311761	40	5.5	40	87	4	289	24	28	22	24	1.99
32315994--32316049	15	3.7	15	83	7	78	12	14	12	60	1.59
32316164--32316277	57	2.0	57	96	0	210	21	5	22	50	1.69
32318553--32318728	46	3.8	46	77	4	192	21	21	28	28	1.98
32318550--32318721	93	1.8	93	92	0	290	22	21	29	27	1.99
32322143--32322276	39	3.4	39	88	0	205	25	29	24	20	1.99
32322257--32322366	39	2.8	39	80	4	141	30	30	17	21	1.96
32325396--32325506	31	3.6	31	91	1	179	22	27	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32325730--32325799	25	2.8	25	82	0	86	28	21	21	28	1.99
32325847--32325903	20	2.8	20	91	0	96	33	19	12	35	1.89
32337212--32337473	39	6.7	40	88	7	337	24	27	22	25	2.00
32345224--32345395	40	4.3	40	90	2	249	26	27	22	24	2.00
32345224--32345447	79	2.8	80	83	8	264	25	27	21	25	2.00
32346525--32346577	14	3.7	14	78	14	63	3	11	5	79	1.03
32346522--32346579	29	2.0	29	96	0	107	5	13	6	74	1.20
32347182--32347207	12	2.2	12	100	0	52	53	15	7	23	1.67
32351991--32352196	40	5.3	40	79	12	225	24	21	27	27	1.99
32352004--32352147	73	2.0	73	95	0	261	24	21	27	27	1.99
32352090--32352472	192	2.0	191	96	0	712	26	19	25	28	1.98
32352282--32352388	40	2.7	41	91	2	164	23	21	27	28	1.99
32352952--32353471	260	2.0	260	96	0	959	36	10	22	30	1.89
32353376--32353758	192	2.0	192	97	0	721	38	13	20	27	1.91
32355085--32355293	103	2.0	103	97	0	391	38	15	25	20	1.92
32371801--32371846	19	2.5	19	82	13	60	28	2	17	52	1.56
32371911--32371949	19	2.1	18	85	4	51	61	10	0	28	1.28
32376221--32376254	16	2.2	16	90	10	54	61	2	0	35	1.11
32382975--32383061	43	2.0	43	86	0	120	24	25	2	48	1.63
32383018--32383164	57	2.6	56	82	7	190	32	20	4	42	1.73
32386805--32386982	27	6.6	27	83	3	205	26	15	28	29	1.96
32386806--32386961	82	1.9	81	88	3	233	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32386802--32386982	82	2.2	81	83	2	229	27	15	27	29	1.96
32396105--32396148	20	2.1	22	87	8	65	0	15	18	65	1.27
32402494--32402715	79	2.8	79	81	9	263	25	21	27	26	1.99
32402494--32402701	40	5.2	40	84	7	262	24	21	27	25	1.99
32406709--32406770	31	2.0	31	90	0	97	35	22	8	33	1.84
32408459--32408663	105	2.0	99	85	7	277	37	31	8	21	1.84
32414012--32414072	26	2.2	29	77	20	83	47	6	13	32	1.68
32414020--32414073	26	2.1	26	96	0	99	48	7	12	31	1.69
32416384--32416541	43	3.7	43	77	12	173	32	25	17	24	1.97
32419316--32419393	38	2.0	39	97	2	149	47	15	0	37	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290