Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  131  of  290  ( 34714 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44434784--44434925
70
2.0
70
93
2
241
43
12
9
33
1.76
44435207--44435366
82
2.0
78
92
4
266
35
8
13
43
1.73
44436444--44436495
24
2.2
24
82
0
68
36
3
7
51
1.49
44436461--44436507
24
2.0
24
83
8
60
36
6
12
44
1.68
44437353--44437428
40
1.9
40
91
0
125
38
30
19
11
1.88
44438989--44439023
15
2.2
16
90
5
54
37
0
14
48
1.44
44440437--44440603
86
1.9
87
90
2
264
32
14
8
44
1.75
44440760--44440933
85
2.1
84
93
1
294
37
5
10
46
1.61
44445561--44445599
20
2.0
20
95
5
71
25
33
5
35
1.78
44463235--44463309
37
2.0
37
100
0
150
46
16
13
24
1.82
44465931--44465965
12
3.0
12
87
4
54
54
0
20
25
1.45
44470851--44470893
9
4.5
10
77
11
54
39
2
2
55
1.25
44470854--44470918
28
2.3
29
86
2
87
32
3
4
60
1.33
44471349--44471385
16
2.2
18
86
13
53
62
8
0
29
1.24
44472497--44472572
38
2.0
38
97
0
143
28
30
9
31
1.88
44473980--44474070
43
2.1
45
93
4
159
43
10
27
17
1.82
44474459--44474542
40
2.1
40
97
0
159
48
16
4
29
1.67
44476424--44476498
14
5.2
14
70
12
53
68
4
26
1
1.16
44478400--44478440
21
2.0
21
90
9
66
43
9
7
39
1.65
44480558--44480621
30
2.1
30
82
5
76
37
12
4
45
1.63
44480734--44480777
11
3.3
15
73
26
53
34
6
11
47
1.66
44483846--44483880
12
3.0
12
87
4
54
54
0
20
25
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44531145--44531228
41
2.0
41
100
0
168
40
19
9
30
1.83
44575481--44575527
21
2.2
22
92
3
78
21
19
38
21
1.94
44578691--44578737
21
2.2
22
92
3
78
21
19
38
21
1.94
44579867--44579925
5
11.8
5
83
0
73
42
18
18
20
1.90
44581324--44581388
31
2.1
30
85
2
85
53
9
7
29
1.60
44582559--44582584
4
6.5
4
100
0
52
50
0
0
50
1.00
44585207--44585331
60
2.1
60
80
8
139
44
8
11
35
1.71
44595166--44595218
25
2.1
25
89
0
79
18
22
20
37
1.94
44595223--44595279
24
2.4
24
79
5
62
14
24
21
40
1.90
44600953--44601021
24
2.8
25
77
4
86
20
13
14
52
1.74
44600953--44601009
25
2.3
25
87
3
80
21
14
12
52
1.73
44601670--44601745
28
2.9
25
71
17
73
61
7
9
21
1.51
44614672--44614754
40
2.1
40
86
0
112
27
13
14
44
1.82
44615501--44615541
15
2.6
16
82
14
50
58
0
0
41
0.98
44619469--44619563
45
2.1
46
88
4
138
64
14
6
14
1.48
44619739--44619800
11
5.5
11
77
9
63
59
0
0
40
0.97
44619764--44619798
10
3.4
10
96
4
61
54
0
0
45
0.99
44619989--44620030
15
2.5
18
81
14
54
57
7
2
33
1.39
44633770--44633817
23
2.0
24
84
8
62
39
0
6
54
1.26
44633780--44633814
16
2.2
16
90
10
54
34
0
2
62
1.10
44633735--44633804
31
2.3
31
82
5
79
32
0
7
60
1.24
44639142--44639173
15
2.1
15
100
0
64
34
0
25
40
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44645585--44645616
15
2.1
15
100
0
64
40
6
18
34
1.76
44658861--44658909
26
1.9
25
87
4
71
40
22
10
26
1.86
44670998--44671049
17
3.4
17
65
29
53
55
7
0
36
1.29
44670998--44671057
28
2.1
28
100
0
120
55
6
0
38
1.27
44675580--44675634
26
2.1
27
86
3
76
40
25
9
25
1.85
44692164--44692219
28
2.0
28
100
0
112
60
14
0
25
1.34
44692183--44692233
20
2.5
20
84
6
68
56
11
0
31
1.35
44692332--44692388
23
2.5
23
94
0
87
43
12
14
29
1.81
44692405--44692445
19
2.0
20
86
9
57
46
0
0
53
1.00
44692418--44692468
10
5.1
10
79
9
59
35
0
1
62
1.06
44698059--44698306
128
1.9
128
95
0
451
28
19
25
26
1.99
44699877--44699947
31
2.3
31
87
0
106
29
9
5
54
1.56
44704662--44704721
30
2.0
31
90
6
97
48
0
3
48
1.18
44707566--44708863
651
2.0
650
95
0
2317
31
18
24
25
1.97
44710769--44711132
79
4.6
79
97
0
674
36
15
18
29
1.92
44711745--44711813
22
3.1
22
97
0
129
4
31
17
46
1.68
44717863--44717907
21
2.1
21
84
12
56
13
55
15
15
1.69
44720623--44720961
131
2.6
130
77
6
351
29
21
15
33
1.94
44734062--44734285
40
5.7
40
84
6
262
24
21
28
25
1.99
44734062--44734279
79
2.8
80
83
6
264
24
22
28
24
1.99
44734130--44734318
79
2.4
79
81
6
206
25
21
28
24
1.99
44740161--44740360
46
4.3
46
79
5
170
22
29
16
32
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44745653--44745682
15
2.0
15
100
0
60
66
6
6
20
1.38
44746320--44746353
15
2.3
15
90
5
52
79
5
11
2
1.02
44746685--44746729
23
2.0
23
90
0
72
28
22
2
46
1.63
44750577--44750652
32
2.5
28
78
19
73
60
0
6
32
1.22
44752784--44753024
44
5.5
44
66
18
135
26
26
19
27
1.99
44752962--44753992
88
11.7
86
91
2
988
27
26
21
23
1.99
44752321--44753234
176
5.2
175
84
2
1139
26
25
18
29
1.98
44752950--44753983
176
5.9
174
93
1
1146
27
27
21
24
1.99
44753173--44753983
44
18.4
44
99
0
1595
26
27
22
23
1.99
44755284--44755362
13
6.2
12
70
21
54
13
2
2
81
0.91
44755284--44755362
23
3.2
23
68
25
63
13
2
2
81
0.91
44755294--44755356
8
8.0
8
80
8
67
14
3
1
80
0.90
44755285--44755356
22
3.2
22
84
7
74
13
2
2
80
0.93
44760192--44760418
112
2.0
112
89
0
346
30
21
26
21
1.98
44763698--44763729
6
5.3
6
92
0
55
81
0
3
15
0.82
44764520--44764603
42
2.0
42
92
0
141
32
19
17
30
1.95
44775571--44775744
46
3.8
46
78
15
205
29
28
20
21
1.98
44775579--44775749
93
1.8
93
93
0
297
29
28
20
21
1.98
44775576--44775765
46
4.1
46
73
16
142
30
28
20
21
1.98
44783171--44783340
46
3.7
45
75
10
173
30
27
21
21
1.98
44783175--44783345
93
1.8
93
91
0
279
30
27
21
21
1.98
44783218--44783354
46
3.0
43
74
12
123
31
27
18
21
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44784036--44784096
30
2.0
30
87
6
88
32
24
6
36
1.81
44792225--44792358
55
2.4
55
82
0
151
17
24
30
26
1.97
44794051--44794408
46
7.8
46
99
0
707
26
28
23
21
1.99
44794831--44794890
30
2.0
30
90
6
95
28
26
6
38
1.81
44798871--44798930
30
2.0
30
87
6
86
38
8
21
31
1.83
44799298--44799683
47
8.2
47
100
0
772
23
19
29
27
1.98
44803845--44803890
23
2.0
22
88
12
67
36
4
10
47
1.58
44836566--44836602
19
1.9
19
100
0
74
13
43
0
43
1.44
44837722--44837773
25
2.1
25
100
0
104
57
7
7
26
1.54
44848331--44848403
6
12.3
6
73
13
62
76
4
2
16
1.05
44848332--44848363
15
2.1
15
100
0
64
81
0
0
18
0.70
44850561--44850590
11
2.7
11
94
0
51
70
0
0
30
0.88
44853374--44853451
19
4.1
19
86
9
115
38
11
14
35
1.82
44853363--44853449
36
2.4
36
76
16
108
39
11
13
35
1.81
44853469--44853576
53
2.0
53
98
0
207
25
13
14
45
1.83
44858071--44858106
18
1.9
19
88
5
56
86
0
11
2
0.68
44859091--44859554
44
10.6
43
80
7
438
30
16
24
28
1.96
44858998--44859562
174
3.2
174
91
1
882
31
16
24
27
1.96
44859122--44859510
131
3.0
130
87
4
455
30
16
24
28
1.97
44858998--44859577
44
13.2
44
78
7
432
31
16
24
27
1.97
44859524--44860456
206
4.5
206
92
0
1454
30
17
22
29
1.97
44860860--44860956
19
5.1
19
88
7
135
41
8
14
36
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44860849--44860934
36
2.4
36
86
11
108
41
9
12
36
1.75
44860878--44860934
17
3.5
15
84
15
53
38
10
15
35
1.82
44860866--44860936
36
2.0
36
97
0
133
40
9
12
36
1.77
44862656--44862853
99
2.0
99
98
0
387
25
15
12
46
1.80
44865524--44865599
40
1.9
40
83
5
100
36
34
14
14
1.87
44870523--44870674
24
6.4
24
84
9
163
35
17
19
26
1.95
44879927--44880050
7
17.4
7
75
21
71
20
0
1
77
0.85
44879926--44880050
14
8.8
14
76
19
84
21
0
1
76
0.87
44879929--44880050
10
13.9
9
76
18
75
21
0
1
77
0.86
44889793--44889839
24
2.0
22
84
8
58
63
2
2
31
1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290