genome.fa.s7.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  106  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36295503--36295672	27	6.3	27	87	1	207	39	17	14	29	1.88
36295516--36295672	81	1.9	81	90	0	251	39	18	14	28	1.89
36297647--36297675	7	4.1	7	100	0	58	31	0	55	13	1.39
36297636--36297675	21	1.9	21	84	0	53	35	0	47	17	1.48
36298867--36298916	22	2.1	24	75	17	59	32	18	22	28	1.97
36308201--36308372	43	4.0	43	72	10	145	25	17	23	33	1.96
36313686--36313766	40	2.1	39	85	2	108	24	17	29	28	1.97
36313781--36313855	28	2.7	28	81	4	80	34	16	25	24	1.95
36316589--36316719	50	2.6	50	89	2	192	29	19	29	20	1.97
36316691--36316810	43	2.7	44	81	11	129	23	17	28	30	1.97
36320339--36320463	41	3.0	41	95	1	223	48	5	16	29	1.69
36320820--36320895	40	1.9	39	89	2	116	30	15	23	30	1.96
36326166--36326218	26	2.0	26	96	0	97	39	0	16	43	1.49
36326531--36326687	43	3.7	42	68	10	122	27	17	24	30	1.97
36337320--36337359	19	2.2	18	86	4	53	50	0	10	40	1.36
36343970--36344147	27	6.6	27	83	3	205	26	15	28	29	1.96
36343971--36344126	82	1.9	81	88	3	233	26	15	28	29	1.96
36343967--36344147	82	2.2	81	83	2	229	27	15	27	29	1.96
36352160--36352337	27	6.6	27	83	3	205	26	15	28	29	1.96
36352161--36352316	82	1.9	81	88	3	233	26	15	28	29	1.96
36352157--36352337	82	2.2	81	83	2	229	27	15	27	29	1.96
36358945--36359344	134	3.0	134	98	0	766	28	11	16	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36361488--36361709	48	4.7	48	74	9	215	27	25	20	27	1.99
36364810--36364982	46	3.7	46	79	14	212	21	21	27	28	1.99
36364807--36364977	93	1.8	93	94	2	308	21	21	28	28	1.99
36369149--36369298	67	2.2	67	81	8	171	32	17	28	21	1.96
36369173--36369356	67	2.8	64	77	8	194	29	17	29	22	1.97
36370862--36370888	13	2.1	13	100	0	54	22	22	33	22	1.97
36371388--36371565	89	2.0	89	96	0	329	33	8	25	31	1.87
36373844--36373906	26	2.4	26	94	5	110	19	26	22	31	1.97
36377064--36377325	39	6.7	40	87	7	337	25	22	27	24	2.00
36384429--36384490	18	3.4	18	77	0	52	43	11	22	22	1.85
36384449--36384494	18	2.6	18	82	0	56	41	15	19	23	1.89
36384851--36384975	27	4.7	26	82	6	137	36	20	16	27	1.93
36384844--36384975	53	2.5	52	79	10	142	37	20	15	26	1.93
36388769--36388799	16	1.9	16	93	0	53	35	22	0	41	1.54
36388766--36388805	20	2.0	20	85	0	53	37	22	0	40	1.54
36388878--36388922	23	1.9	24	90	4	74	22	24	11	42	1.86
36390886--36390942	30	1.9	29	92	3	96	28	14	24	33	1.94
36400551--36400702	27	5.6	27	93	3	232	30	28	13	26	1.94
36400551--36400727	55	3.2	55	90	0	264	31	29	13	25	1.94
36406393--36406466	33	2.2	33	76	9	78	29	25	12	32	1.92
36408119--36408279	43	3.7	43	77	11	161	32	25	17	24	1.97
36408108--36408277	86	2.0	85	82	10	204	32	25	17	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36410642--36410738	39	2.5	39	88	3	142	24	27	20	26	1.99
36420922--36421195	39	7.0	39	95	0	431	25	28	20	26	1.99
36423846--36423881	13	2.8	13	100	0	72	38	25	13	22	1.91
36435561--36435588	13	2.2	13	100	0	56	78	7	14	0	0.95
36436359--36436408	15	3.4	14	86	8	73	32	0	12	56	1.36
36436780--36436866	21	4.0	23	80	10	92	14	21	25	37	1.92
36439715--36439741	6	4.5	6	100	0	54	18	0	0	81	0.69
36441310--36441404	46	2.0	46	81	2	109	29	15	15	38	1.89
36446297--36446353	29	2.0	29	82	6	71	22	33	24	19	1.97
36449411--36449510	52	1.9	52	95	0	182	29	19	11	41	1.85
36450064--36450102	19	2.1	19	95	0	69	46	10	12	30	1.75
36473857--36473915	24	2.4	25	83	11	68	35	3	5	55	1.38
36476141--36476190	14	3.5	14	73	21	50	30	2	26	42	1.66
36482726--36482778	23	2.4	22	76	20	56	9	18	1	69	1.25
36485107--36485166	22	2.7	23	73	19	63	66	6	0	26	1.16
36485116--36485149	4	8.0	4	90	9	50	73	2	0	23	0.97
36488427--36488509	40	2.1	40	88	4	123	25	22	19	32	1.97
36488973--36489028	28	2.0	28	100	0	112	32	10	17	39	1.84
36494297--36494342	23	2.0	23	100	0	92	30	13	13	43	1.81
36494614--36494656	21	2.2	19	88	12	61	25	0	18	55	1.42
36496898--36496991	44	2.1	44	90	7	145	36	25	5	32	1.79
36496973--36497044	16	4.5	16	91	0	99	27	25	6	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36497605--36497674	31	2.3	31	89	0	104	34	20	21	24	1.97
36498071--36498113	16	2.7	16	79	10	52	48	0	0	51	1.00
36501085--36501139	26	2.2	26	90	9	87	32	5	3	58	1.38
36501653--36501738	30	2.9	30	91	0	136	18	50	5	25	1.69
36502227--36502305	9	8.1	9	71	15	50	26	3	1	68	1.14
36502229--36502307	12	6.3	12	75	13	61	27	3	1	67	1.16
36502237--36502307	18	3.7	18	80	12	79	29	4	1	64	1.20
36502393--36502478	30	2.9	30	91	0	136	18	50	5	25	1.69
36502967--36503045	9	8.1	9	71	15	50	26	3	1	68	1.14
36502969--36503047	12	6.3	12	75	13	61	27	3	1	67	1.16
36502977--36503047	18	3.7	18	80	12	79	29	4	1	64	1.20
36501638--36503117	740	2.0	740	100	0	2960	34	16	14	34	1.89
36503127--36503179	12	4.5	13	75	17	53	32	0	5	62	1.19
36505446--36505491	19	2.4	19	85	7	58	19	17	13	50	1.78
36513828--36514059	88	2.6	87	90	3	349	28	16	27	27	1.97
36514047--36515024	88	11.1	88	73	10	463	32	17	23	26	1.97
36514062--36515904	132	14.1	132	93	1	3050	32	17	23	26	1.97
36515147--36515904	44	17.2	44	76	8	632	32	17	22	26	1.97
36515896--36516321	87	4.9	87	86	2	534	35	20	22	20	1.96
36515896--36516273	43	8.7	43	68	8	228	35	21	21	20	1.96
36515896--36516282	174	2.2	174	94	0	668	36	20	21	20	1.96
36516378--36516799	79	5.0	85	84	6	433	38	20	21	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36516391--36516541	44	3.5	43	75	8	153	35	24	21	18	1.95
36516529--36516655	35	3.4	35	64	24	87	40	18	20	20	1.92
36516642--36516755	43	2.6	44	73	8	117	41	21	21	16	1.90
36518870--36518961	31	3.2	31	59	23	72	48	5	3	42	1.42
36518861--36518973	56	2.0	56	100	0	226	46	7	3	42	1.48
36519639--36519670	13	2.5	13	94	0	55	75	0	0	25	0.81
36527651--36527683	13	2.6	13	90	4	50	45	0	3	51	1.16
36527702--36527746	18	2.3	20	81	7	58	44	2	2	51	1.26
36527798--36527829	16	2.0	16	93	0	55	40	6	12	40	1.68
36531229--36531287	22	2.7	22	75	0	64	15	13	13	57	1.65
36532885--36532925	17	2.4	19	76	23	54	17	21	31	29	1.96
36532918--36532976	17	3.5	16	70	25	50	22	15	25	37	1.93
36533899--36533950	17	3.1	17	83	5	61	59	1	3	34	1.27
36535170--36535209	19	2.1	19	86	9	55	50	2	0	47	1.14
36535196--36535233	11	3.5	11	82	7	51	68	0	0	31	0.90
36535683--36535759	27	2.8	26	74	18	66	50	0	7	41	1.31
36535971--36536006	18	2.1	18	89	5	56	75	8	16	0	1.04
36536917--36537016	27	3.6	27	77	9	96	19	4	35	42	1.70
36538788--36538925	69	2.0	69	95	0	249	29	16	13	40	1.86
36542377--36542666	43	6.8	43	82	3	282	31	26	16	25	1.96
36543421--36544368	183	5.2	183	81	6	797	39	23	4	32	1.74
36543421--36544371	23	41.4	23	77	9	807	39	23	4	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36545840--36545874	6	6.0	6	90	3	54	82	14	2	0	0.77
36546099--36546194	14	6.8	14	76	10	97	51	31	0	17	1.46
36546099--36546194	7	13.6	7	75	6	77	51	31	0	17	1.46
36546967--36547062	41	2.3	41	83	0	111	30	28	12	29	1.93
36546999--36547103	41	2.6	41	86	4	133	26	28	13	31	1.94
36552119--36552157	18	2.2	18	85	0	51	66	7	7	17	1.40
36556198--36556223	5	5.2	5	100	0	52	38	0	0	61	0.96
36557887--36557937	26	2.0	25	88	3	75	31	13	11	43	1.80
36558227--36558259	17	1.9	17	88	11	50	48	9	6	36	1.60
36569278--36569312	18	2.0	18	94	5	63	17	22	40	20	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290