genome.fa.s7.2.7.7.80.10.50.1000.271.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  271  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93603865--93604150	151	1.9	151	85	2	396	25	15	30	28	1.96
93604924--93604948	12	2.1	12	100	0	50	32	24	20	24	1.98
93626089--93626259	93	1.8	93	93	0	297	26	28	22	22	1.99
93626081--93626256	46	3.8	46	79	12	207	27	28	21	22	1.99
93629211--93629392	78	2.3	80	81	8	203	25	27	22	24	2.00
93629209--93629392	40	4.7	40	78	10	191	26	27	22	23	2.00
93633503--93633582	27	3.0	28	81	7	94	42	15	16	26	1.87
93635241--93635296	10	5.5	10	79	12	51	17	25	21	35	1.95
93635239--93635300	20	3.1	20	79	6	72	17	25	19	37	1.94
93640741--93640912	79	2.2	79	84	3	220	25	21	27	25	1.99
93640688--93640910	40	5.6	39	81	8	209	25	21	27	25	1.99
93640768--93640945	79	2.2	80	80	3	191	25	21	28	24	1.99
93641599--93642060	236	2.0	237	98	0	890	38	12	23	25	1.90
93644349--93644406	21	2.7	21	81	2	62	68	3	22	5	1.24
93645493--93645545	21	2.7	20	77	8	63	20	22	16	39	1.92
93647589--93647801	39	5.5	39	85	5	272	29	26	23	20	1.99
93647589--93647803	75	2.8	76	85	4	272	29	26	23	20	1.99
93653304--93653492	27	7.0	27	85	2	209	35	18	20	25	1.95
93653694--93653781	27	3.3	26	84	4	104	19	20	21	38	1.93
93653898--93654022	6	20.3	6	69	14	76	18	20	15	45	1.85
93653901--93653964	25	2.6	25	85	5	76	17	23	17	42	1.89
93653929--93653996	19	3.6	19	78	11	86	17	22	16	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93653920--93654013	37	2.5	37	85	0	125	18	21	14	45	1.85
93655456--93655495	8	5.0	8	90	0	62	52	22	22	2	1.59
93655910--93655993	27	3.2	26	84	5	105	20	23	20	35	1.96
93672307--93672495	27	7.0	27	89	2	254	34	18	21	25	1.96
93672699--93672816	28	4.3	28	93	3	195	18	22	23	35	1.96
93672697--93672840	28	5.3	26	90	5	180	19	21	22	36	1.95
93672958--93673088	6	21.3	6	74	16	99	20	19	12	47	1.81
93672961--93673031	25	2.8	25	84	0	97	21	21	12	45	1.84
93672958--93673067	31	3.6	30	75	14	116	20	20	11	46	1.82
93672986--93673080	37	2.6	37	84	0	127	22	21	10	46	1.81
93678537--93678845	40	7.6	40	85	8	347	25	27	21	25	2.00
93678777--93678854	40	1.9	41	82	10	97	26	28	20	24	1.99
93679440--93679607	84	2.0	84	98	0	327	39	22	12	25	1.89
93681996--93682021	13	2.0	13	100	0	52	30	30	30	7	1.85
93686556--93686666	27	4.2	26	83	5	132	37	23	22	16	1.93
93694358--93694468	27	4.2	26	86	5	141	36	21	24	17	1.94
93696922--93696962	12	3.3	12	93	3	64	17	21	0	60	1.35
93696922--93696962	18	2.2	19	83	12	50	17	21	0	60	1.35
93704336--93704491	43	3.6	43	90	0	240	28	30	16	24	1.97
93707611--93707656	23	2.0	23	100	0	92	34	30	8	26	1.86
93709419--93709509	45	2.0	45	85	2	121	37	28	6	27	1.82
93709490--93709558	16	4.2	16	92	3	120	36	37	1	24	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93709490--93709558	33	2.1	32	94	2	120	36	37	1	24	1.65
93710767--93710848	21	3.7	21	73	12	83	45	26	0	28	1.54
93710776--93710854	14	5.4	14	69	11	50	46	24	0	29	1.53
93711016--93711265	41	6.1	41	85	2	342	20	20	22	37	1.95
93714527--93714582	21	2.5	22	83	11	62	19	3	3	73	1.13
93714552--93714585	17	1.9	18	88	5	52	20	0	2	76	0.92
93717145--93717180	18	2.0	18	89	10	56	25	38	25	11	1.88
93721717--93721751	18	1.9	18	94	0	61	11	60	20	8	1.57
93724361--93724407	5	9.4	5	81	9	60	19	0	2	78	0.85
93732693--93732868	46	3.8	46	81	14	218	20	19	30	29	1.97
93732690--93732861	93	1.8	93	92	2	292	20	20	30	28	1.98
93735476--93735683	27	7.7	27	87	0	272	40	19	7	32	1.80
93735476--93735705	54	4.3	54	88	2	327	40	18	8	32	1.81
93735476--93735816	27	12.6	27	76	5	224	39	20	8	32	1.83
93735801--93736264	27	17.3	27	86	0	599	33	20	21	24	1.97
93736691--93736754	22	2.9	22	79	9	76	20	21	23	34	1.97
93736913--93737014	27	3.8	27	81	5	116	19	22	20	37	1.95
93737146--93737239	6	15.3	6	71	16	68	21	15	13	48	1.80
93737146--93737224	31	2.5	31	95	0	140	20	16	13	49	1.79
93744404--93744474	25	2.9	25	89	6	101	22	12	1	63	1.37
93744468--93744492	11	2.3	11	100	0	50	32	0	8	60	1.26
93749951--93750120	58	2.9	57	83	6	180	25	22	14	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93750024--93750142	61	2.0	61	93	0	202	25	21	15	37	1.93
93750077--93750140	28	2.3	26	79	12	74	26	17	14	42	1.87
93754166--93754220	24	2.3	24	87	0	83	50	21	1	25	1.58
93765376--93765407	15	2.1	15	100	0	64	25	0	37	37	1.56
93771872--93771937	29	2.3	29	81	5	71	30	25	1	42	1.64
93778413--93778535	41	3.0	41	79	10	144	37	21	21	20	1.95
93778508--93778696	41	4.6	41	87	1	254	23	21	26	28	1.99
93778508--93778684	81	2.2	82	86	1	248	23	20	26	29	1.99
93779166--93779232	23	3.0	23	82	6	84	22	0	37	40	1.54
93781364--93781409	23	2.0	23	100	0	92	26	8	30	34	1.86
93784461--93784503	17	2.4	17	80	7	50	65	4	0	30	1.13
93784529--93784684	43	3.6	43	90	0	240	24	16	30	28	1.97
93792058--93792098	12	3.3	12	93	3	64	60	0	21	17	1.35
93794570--93794676	27	4.0	26	85	6	133	17	24	20	37	1.94
93802368--93802478	27	4.2	26	83	5	132	16	22	23	37	1.93
93807013--93807038	13	2.0	13	100	0	52	7	30	30	30	1.85
93810086--93810257	40	4.3	40	88	2	222	25	21	27	25	1.99
93810086--93810257	79	2.2	79	84	3	220	25	21	27	25	1.99
93810113--93810290	79	2.2	80	80	3	191	25	21	28	24	1.99
93811193--93811494	150	2.0	149	96	0	559	30	18	20	30	1.96
93818174--93818351	40	4.5	39	85	4	198	26	20	27	25	1.99
93818180--93818351	80	2.2	79	85	3	229	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93818207--93818384	79	2.2	80	82	3	200	25	21	28	24	1.99
93830228--93830400	46	3.8	45	75	11	163	23	19	26	31	1.98
93830625--93830662	19	2.0	20	85	15	53	36	0	23	39	1.55
93834039--93834210	40	4.3	40	86	2	195	26	27	21	24	1.99
93836059--93836316	40	6.5	40	87	4	335	24	27	24	23	2.00
93839196--93839279	40	2.1	40	95	0	150	26	19	30	23	1.98
93843877--93844085	104	2.0	104	99	0	409	39	9	20	30	1.85
93844331--93844501	93	1.8	93	87	2	254	23	21	26	29	1.99
93846941--93847271	43	7.7	43	86	0	455	25	17	28	28	1.97
93859620--93859650	13	2.3	14	94	5	55	22	12	19	45	1.84
93861584--93861657	26	2.8	26	100	0	148	31	5	28	35	1.80
93863123--93863175	26	2.0	26	85	7	72	37	22	9	30	1.86
93866202--93866278	27	3.1	27	62	21	67	20	18	24	36	1.95
93866191--93866333	48	3.0	48	89	2	207	21	17	27	33	1.96
93868645--93868762	28	4.2	28	85	0	155	21	14	37	27	1.92
93868645--93868762	56	2.1	56	88	0	173	21	14	37	27	1.92
93869080--93869304	27	8.3	27	80	8	192	36	21	12	30	1.89
93869257--93869321	27	2.4	27	84	5	78	40	21	15	23	1.91
93869088--93869306	81	2.7	79	79	6	244	35	21	11	30	1.90
93869832--93869899	27	2.5	26	77	11	66	22	19	27	30	1.97
93872174--93872263	28	3.2	28	93	0	144	18	15	38	26	1.91
93872598--93872807	27	7.8	27	79	10	198	38	16	10	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93872598--93872805	81	2.6	81	83	4	260	38	16	11	33	1.84
93875931--93875983	26	2.0	26	100	0	106	18	18	26	35	1.95
93878006--93878196	56	3.4	56	88	2	269	29	13	24	32	1.93
93879179--93879240	31	2.0	32	87	3	90	35	19	24	20	1.96
93879910--93879960	27	1.9	27	84	4	68	37	21	19	21	1.95
93879974--93880159	54	3.4	54	81	4	214	26	19	17	36	1.94
93879978--93880159	81	2.2	81	85	3	233	25	19	18	36	1.94
93879978--93880159	27	6.8	26	80	6	186	25	19	18	36	1.94
93881332--93881407	38	2.0	38	94	0	134	32	11	22	32	1.90
93882594--93882738	40	3.6	40	85	4	193	25	24	26	23	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290