genome.fa.s9.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  101  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32819727--32819833	52	2.1	52	89	0	160	21	16	29	31	1.96
32824043--32824068	11	2.4	11	100	0	52	23	42	0	34	1.54
32830219--32830322	52	2.0	52	86	3	147	21	18	29	30	1.97
32833500--32833582	27	3.1	27	84	6	114	30	15	22	31	1.95
32833564--32833908	27	12.8	27	77	7	180	40	18	9	31	1.83
32833615--32833820	54	3.8	55	80	5	206	41	20	9	28	1.83
32833589--32833820	81	2.9	81	78	6	229	41	19	9	29	1.82
32834170--32834290	41	3.0	41	86	0	179	23	20	27	28	1.99
32834438--32834583	25	5.8	25	82	0	184	19	17	26	36	1.93
32834451--32834583	50	2.7	50	95	0	239	18	17	27	36	1.94
32838503--32838691	40	4.7	40	89	1	272	24	22	28	24	2.00
32840651--32840725	26	2.8	27	83	4	98	36	17	12	34	1.87
32840654--32841021	27	13.7	27	79	5	235	39	18	9	31	1.83
32841286--32841405	41	2.9	41	82	3	152	23	20	27	29	1.98
32841553--32841696	25	5.8	25	79	0	162	19	16	26	37	1.93
32841559--32841696	50	2.8	50	90	0	222	18	16	27	36	1.93
32844531--32844604	26	2.8	27	85	4	105	36	18	12	32	1.88
32844584--32844875	27	10.8	27	77	7	209	41	18	9	29	1.82
32844583--32844875	54	5.4	53	78	7	232	41	19	9	29	1.83
32844579--32844816	81	2.9	80	84	7	284	41	20	9	29	1.83
32844740--32844870	55	2.4	54	79	6	147	44	13	10	31	1.78
32844540--32844875	27	12.4	27	79	8	177	40	18	10	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32845140--32845259	41	2.9	41	85	3	161	23	19	29	28	1.98
32845407--32845552	25	5.8	25	77	0	148	19	17	24	37	1.94
32845420--32845552	50	2.7	50	90	0	221	19	18	25	36	1.94
32847466--32847687	40	5.6	39	81	6	207	25	27	21	25	1.99
32847464--32847687	80	2.8	79	80	7	231	25	28	21	25	1.99
32847619--32847695	40	1.9	41	81	7	95	25	28	20	24	1.99
32851491--32851597	27	4.0	27	81	6	110	36	18	16	28	1.93
32851491--32851597	54	2.0	53	85	1	142	36	18	16	28	1.93
32851607--32851870	27	9.8	27	78	4	196	39	17	10	32	1.84
32851581--32851839	80	3.2	78	74	8	180	41	17	9	31	1.81
32851681--32851870	82	2.3	81	78	4	211	39	17	10	32	1.84
32852288--32852513	50	4.5	50	95	0	407	19	15	26	38	1.91
32852288--32852523	25	9.4	25	79	0	265	19	16	25	38	1.91
32858314--32858423	43	2.6	42	82	5	141	28	18	25	28	1.98
32858510--32858556	20	2.3	20	88	0	76	31	2	29	36	1.70
32863648--32863821	27	6.4	27	84	4	188	29	27	15	27	1.96
32863665--32863820	82	1.9	81	86	3	224	28	28	16	26	1.97
32869879--32869925	20	2.3	20	88	0	76	31	2	29	36	1.70
32877426--32877469	20	2.2	20	91	0	70	36	31	2	29	1.70
32877557--32877666	43	2.6	42	82	5	141	28	25	18	28	1.98
32883428--32883661	25	9.4	25	76	3	231	39	24	16	19	1.91
32883438--32883661	50	4.5	50	92	3	373	39	25	16	19	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32884093--32884160	27	2.6	26	81	4	73	33	13	19	33	1.90
32884117--32884243	27	4.7	26	76	8	110	32	10	18	38	1.85
32884212--32884284	28	2.5	29	80	4	85	31	12	17	38	1.87
32884405--32884478	27	2.8	25	81	16	87	29	17	14	37	1.90
32887377--32887519	25	5.6	25	81	9	139	28	13	28	29	1.94
32895526--32895703	27	6.6	27	83	3	205	26	15	28	29	1.96
32895527--32895682	82	1.9	81	88	3	233	26	15	28	29	1.96
32895523--32895703	82	2.2	81	83	2	229	27	15	27	29	1.96
32899221--32899301	43	1.9	42	87	7	119	32	25	16	25	1.96
32904743--32904930	49	3.8	49	83	5	252	28	24	19	27	1.99
32904749--32904928	100	1.8	100	96	0	333	28	24	20	26	1.99
32905160--32905213	27	2.0	27	85	0	72	38	14	7	38	1.75
32908252--32908422	40	4.3	40	83	6	206	24	21	26	27	1.99
32908252--32908422	80	2.2	79	86	7	231	24	21	26	27	1.99
32936205--32936378	46	3.8	46	76	14	187	29	28	20	21	1.98
32936211--32936382	93	1.8	93	92	2	292	28	28	20	22	1.99
32936255--32936398	46	3.1	44	74	15	132	29	28	19	22	1.98
32941780--32941951	93	1.8	93	93	0	299	28	29	20	21	1.98
32941773--32941948	46	3.8	46	77	12	198	29	28	20	21	1.98
32941822--32941960	47	3.0	46	74	16	135	30	28	18	22	1.97
32951137--32951173	19	1.9	19	88	0	56	54	10	2	32	1.49
32953937--32953965	14	2.0	15	93	6	51	51	20	0	27	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32966133--32966190	26	2.2	26	90	0	89	27	32	20	18	1.97
32966158--32966253	40	2.4	40	92	0	156	31	30	16	21	1.96
32968976--32969022	20	2.3	20	85	0	67	34	2	27	36	1.69
32971437--32971471	18	1.9	18	88	0	52	54	0	2	42	1.15
32972567--32972644	39	2.0	39	94	0	138	32	14	14	39	1.85
32975790--32975866	27	2.9	26	80	3	73	27	19	19	33	1.96
32976211--32976245	18	1.9	18	94	0	61	22	11	11	54	1.68
32982379--32982436	16	3.6	16	86	4	82	46	3	0	50	1.18
32982372--32982427	16	3.8	14	72	19	51	46	3	0	50	1.19
32996848--32997086	122	2.0	122	100	0	478	28	5	25	41	1.76
33001426--33001515	29	3.2	29	72	9	87	26	27	15	30	1.96
33001587--33001625	9	4.2	9	83	6	51	15	38	17	28	1.91
33001734--33001778	8	5.6	8	83	0	63	6	13	20	60	1.55
33005125--33005220	29	3.3	29	89	1	140	25	12	30	32	1.92
33011104--33011162	21	2.8	21	84	0	73	37	25	13	23	1.92
33017284--33017325	21	2.0	21	100	0	84	38	19	4	38	1.73
33018695--33018857	43	3.8	43	76	10	147	33	25	15	25	1.95
33018728--33018857	44	3.0	44	81	8	133	33	24	16	25	1.95
33020997--33021055	28	2.1	28	81	12	68	30	0	18	50	1.47
33030086--33030186	20	5.1	19	63	13	60	10	30	20	37	1.87
33043459--33043543	40	2.1	40	80	4	91	18	20	35	25	1.95
33048379--33048432	26	2.1	26	100	0	108	53	7	0	38	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33062414--33062591	27	6.6	27	85	3	205	29	29	14	26	1.95
33062414--33062591	54	3.3	54	85	3	232	29	29	14	26	1.95
33062435--33062590	81	1.9	82	88	3	235	29	29	14	26	1.95
33070313--33070490	27	6.6	27	85	3	205	29	28	15	26	1.96
33076338--33076376	18	2.2	18	86	9	53	38	5	0	56	1.22
33079020--33079191	67	2.6	67	81	9	183	30	16	30	22	1.95
33083605--33083678	28	2.6	28	91	4	114	28	14	25	31	1.95
33087620--33087654	18	1.9	18	94	0	61	57	8	14	20	1.63
33087617--33087701	6	13.8	6	68	18	50	48	14	20	17	1.81
33087638--33087729	25	3.7	25	88	0	121	46	15	18	19	1.84
33099595--33099902	30	10.3	30	75	6	207	25	25	12	36	1.90
33099590--33099796	89	2.3	89	83	2	245	25	26	13	34	1.93
33099595--33099882	60	4.8	60	75	9	230	24	26	12	36	1.91
33099616--33099902	119	2.4	118	84	4	382	26	26	11	36	1.90
33099985--33100023	12	3.6	12	74	25	50	46	7	5	41	1.55
33099985--33100026	20	2.1	20	100	0	84	45	9	4	40	1.58
33109837--33109945	55	2.0	55	98	0	209	35	24	9	30	1.87
33110004--33110327	96	3.4	95	80	5	314	24	28	19	28	1.98
33110011--33110378	48	7.7	48	74	10	281	24	27	19	27	1.99
33113603--33113785	40	4.6	40	83	6	194	25	27	22	24	2.00
33113601--33113785	79	2.3	80	79	8	198	25	28	22	23	2.00
33121327--33121894	286	2.0	286	85	1	762	30	17	21	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33126187--33126298	43	2.6	42	83	5	145	29	16	25	28	1.97
33130627--33130660	11	2.8	12	86	13	52	26	0	0	73	0.83
33130634--33130661	11	2.5	11	100	0	56	25	0	0	75	0.81
33130784--33130845	30	2.1	30	93	0	106	59	12	3	24	1.48
33145528--33145584	28	2.0	28	89	3	87	63	3	10	22	1.42
33145330--33147303	282	6.8	284	75	9	1384	35	19	14	29	1.92
33145269--33147182	883	2.2	880	79	6	1991	36	19	15	29	1.92
33145269--33147316	867	2.3	881	79	6	2033	36	19	15	29	1.92
33145330--33147316	300	6.8	297	75	10	1464	35	19	15	29	1.92
33150826--33150937	56	2.0	56	100	0	224	46	8	16	28	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250