genome.fa.s9.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  164  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52809771--52809812	18	2.3	19	87	4	59	21	26	14	38	1.91
52815706--52815779	34	2.2	34	92	0	121	50	10	18	20	1.77
52815834--52815875	20	2.2	19	87	12	59	38	0	4	57	1.20
52815834--52815940	3	36.7	3	70	12	71	35	0	5	57	1.28
52816224--52816270	13	3.5	14	80	5	53	76	2	8	12	1.09
52817036--52817122	40	2.2	40	87	0	120	33	9	16	41	1.80
52818839--52818879	21	2.0	20	85	4	55	63	4	12	19	1.46
52821124--52821166	5	8.0	5	80	14	50	20	0	2	76	0.89
52825020--52825173	47	3.3	47	88	0	245	27	30	7	33	1.85
52832686--52832728	21	2.0	21	82	8	52	2	25	13	58	1.48
52832916--52833010	47	2.0	47	93	0	163	34	13	12	38	1.83
52834596--52834640	21	2.2	20	84	8	54	31	6	13	48	1.68
52835881--52835917	4	9.2	4	87	0	56	70	5	0	24	1.08
52835880--52835915	12	3.0	12	100	0	72	66	8	0	25	1.19
52836683--52836711	12	2.3	13	94	5	51	27	0	0	72	0.85
52842139--52842213	20	3.8	20	89	6	102	37	8	18	36	1.80
52842146--52842198	11	5.2	11	76	15	60	35	7	18	37	1.80
52842263--52842360	26	3.8	26	93	1	162	26	22	22	28	1.99
52850181--52850237	9	5.8	10	76	15	57	36	8	19	35	1.83
52850180--52850254	20	3.8	20	91	6	111	37	9	18	34	1.83
52850199--52850254	11	5.5	11	71	16	57	37	10	19	32	1.86
52850304--52850375	26	2.8	26	93	2	119	27	19	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52852407--52852615	42	4.9	43	69	11	126	32	24	13	29	1.94
52882324--52882369	13	3.5	13	80	17	51	63	2	0	34	1.07
52882309--52882362	19	2.8	20	83	8	67	61	1	0	37	1.07
52900726--52900869	55	2.6	55	78	2	164	29	31	25	12	1.93
52903958--52904013	29	1.9	29	96	0	103	28	3	30	37	1.74
52926448--52926486	16	2.4	16	83	8	53	61	7	10	20	1.52
52928700--52928921	92	2.4	92	81	4	252	33	19	22	24	1.97
52932321--52932407	40	2.2	38	80	7	102	35	33	12	18	1.89
52934063--52934317	55	4.8	52	79	8	225	21	25	17	35	1.95
52934110--52934310	108	1.8	110	88	4	309	22	24	18	33	1.97
52937330--52937388	10	6.0	10	75	11	50	35	3	0	61	1.13
52937484--52937546	22	2.8	22	72	9	56	41	3	0	55	1.16
52939342--52939412	18	3.9	18	79	0	79	40	12	7	39	1.70
52939767--52939801	16	2.2	16	90	5	54	42	8	2	45	1.49
52940622--52940651	15	1.9	16	93	6	53	6	40	0	53	1.27
52941425--52941464	12	3.3	12	86	6	55	57	15	10	17	1.64
52941434--52941555	6	19.8	6	68	14	61	49	11	18	20	1.78
52941446--52941555	31	3.4	31	77	14	103	48	11	19	20	1.80
52941446--52941533	37	2.4	37	92	0	140	46	11	21	20	1.82
52941434--52941555	37	3.5	37	75	13	121	49	11	18	20	1.78
52942355--52942597	27	8.9	27	77	11	81	30	9	18	40	1.83
52942359--52942436	29	2.8	29	78	9	90	30	7	16	44	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52942447--52942602	54	2.9	54	81	5	190	29	10	20	39	1.87
52942447--52942602	81	1.9	81	84	7	210	29	10	20	39	1.87
52942447--52942609	27	6.0	27	82	7	152	28	11	22	38	1.88
52942601--52942800	27	7.4	27	84	3	233	37	7	24	31	1.82
52942643--52942818	27	6.5	28	79	8	98	34	7	24	34	1.83
52944956--52944995	12	3.3	12	86	6	55	57	15	10	17	1.64
52944965--52945086	6	19.8	6	68	14	70	49	11	19	19	1.78
52944977--52945086	31	3.4	31	78	14	112	48	11	20	20	1.80
52944977--52945064	37	2.4	37	92	0	140	46	11	21	20	1.82
52944965--52945086	37	3.5	37	76	13	130	49	11	19	19	1.78
52945205--52945264	27	2.3	26	88	2	84	33	20	25	21	1.97
52945232--52945371	67	2.0	67	87	5	199	30	22	28	18	1.98
52945303--52945354	27	2.0	26	84	3	68	34	21	26	17	1.95
52945891--52946146	27	9.4	27	72	9	101	33	8	19	38	1.82
52945978--52946105	54	2.4	54	80	5	152	28	10	21	40	1.85
52946109--52946303	81	2.4	81	81	3	221	35	7	24	32	1.83
52946109--52946299	27	7.1	27	81	4	197	35	6	25	32	1.82
52945955--52946299	54	6.4	53	71	12	143	32	7	22	37	1.83
52947336--52947403	16	4.1	16	70	21	50	45	5	1	47	1.36
52947485--52947518	4	8.0	4	87	12	50	23	2	0	73	0.97
52947485--52947518	9	4.0	8	88	11	50	23	2	0	73	0.97
52947484--52947518	13	2.7	13	90	0	61	22	5	0	71	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52948950--52949001	24	2.1	26	82	7	63	48	1	5	44	1.38
52952344--52952386	18	2.5	17	84	3	50	39	4	2	53	1.34
52954574--52954615	15	2.6	17	81	7	52	45	9	0	45	1.36
52954693--52954780	37	2.4	38	79	9	94	40	3	4	51	1.39
52954784--52954842	16	3.6	16	78	15	59	38	1	3	55	1.26
52958461--52958738	137	2.0	138	99	0	549	32	18	15	34	1.92
52961938--52962110	46	3.7	46	76	13	192	21	19	27	31	1.97
52961935--52962105	93	1.8	93	92	0	288	21	19	28	30	1.97
52964282--52964309	11	2.5	11	100	0	56	50	17	0	32	1.47
52966576--52966609	18	1.9	17	88	5	50	23	0	44	32	1.54
52970083--52970137	22	2.5	22	87	0	83	34	21	1	41	1.64
52970614--52970651	19	2.0	19	85	10	51	47	5	0	47	1.24
52977679--52977729	17	2.8	19	74	17	54	45	3	1	49	1.32
52978354--52978409	16	3.4	16	82	2	67	46	1	19	32	1.61
52978558--52978634	26	2.9	26	70	20	70	46	2	0	50	1.15
52978588--52978616	15	1.9	15	100	0	58	55	0	0	44	0.99
52983965--52984222	46	5.6	45	77	7	209	27	20	29	23	1.99
52983968--52984138	94	1.8	92	86	5	245	28	19	29	22	1.98
52984062--52984265	46	4.5	45	77	9	148	26	19	28	24	1.99
52990941--52990981	20	2.0	20	85	9	55	48	0	2	48	1.14
52991579--52991800	111	2.0	111	90	0	354	36	31	8	23	1.84
52994623--52994826	43	4.7	42	83	5	203	31	20	20	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52995120--52995167	21	2.3	21	92	0	78	0	58	18	22	1.39
52995716--52995872	9	16.6	9	76	12	145	31	0	21	47	1.56
52996052--52996537	241	2.0	241	95	1	877	33	14	17	34	1.90
52996750--52997081	183	1.8	183	95	0	610	42	14	16	27	1.86
52998836--52998879	22	2.0	22	100	0	88	36	13	18	31	1.90
53000043--53000085	22	2.0	22	95	0	77	48	25	11	13	1.77
53000590--53000702	57	2.0	57	96	0	208	30	21	7	39	1.82
53001561--53001715	77	2.0	79	88	5	235	23	22	15	38	1.93
53002860--53003096	41	5.8	41	91	0	386	18	24	25	30	1.98
53003064--53003177	40	2.8	40	80	5	113	21	17	21	39	1.92
53002859--53003189	41	8.1	40	82	5	283	18	22	23	35	1.96
53011999--53012028	6	5.0	6	91	0	51	30	33	0	36	1.58
53015223--53015295	6	12.5	6	78	5	69	75	6	1	16	1.09
53021978--53022073	43	2.2	43	81	0	111	13	39	25	21	1.90
53031643--53031671	10	2.7	11	94	5	51	41	0	20	37	1.53
53032210--53032303	48	1.9	49	84	2	127	18	25	21	35	1.95
53032210--53032276	24	2.8	24	72	4	64	16	25	22	35	1.94
53040116--53040290	46	3.8	46	76	13	187	21	21	28	28	1.99
53068517--53068566	26	2.0	24	88	7	73	64	6	0	30	1.18
53068537--53068595	21	2.8	21	78	12	59	69	8	0	22	1.15
53073441--53073613	46	3.8	46	78	14	196	19	21	30	28	1.98
53076543--53076611	15	4.6	15	83	0	84	11	17	13	57	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53076534--53076621	30	3.0	30	81	8	99	10	17	15	56	1.66
53079008--53079183	46	3.8	46	81	10	214	21	21	28	28	1.98
53079004--53079175	93	1.8	93	93	0	299	20	21	29	27	1.98
53098175--53098201	8	3.4	8	100	0	54	37	0	37	25	1.57
53122470--53122529	31	2.0	31	83	6	79	30	16	23	30	1.96
53123795--53123967	46	3.7	46	76	13	176	21	21	27	29	1.99
53123792--53123962	93	1.8	93	88	5	265	21	21	28	28	1.99
53124192--53124229	19	2.0	20	85	15	53	36	0	23	39	1.55
53130887--53130943	30	1.9	30	85	0	78	36	8	24	29	1.86
53131366--53131538	46	3.7	46	76	10	172	23	19	26	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250