genome.fa.s9.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  154  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49669671--49669737	19	3.5	19	72	25	52	65	4	1	28	1.21
49669651--49669744	40	2.3	40	79	15	97	61	3	1	34	1.19
49670582--49670632	23	2.3	22	80	6	57	39	7	19	33	1.81
49671820--49671913	41	2.3	41	84	0	125	30	28	23	17	1.97
49678712--49678751	16	2.5	16	84	8	55	37	0	0	62	0.95
49683105--49683416	94	3.3	93	78	6	317	27	18	28	25	1.98
49683097--49683416	47	6.8	44	73	14	162	27	18	28	24	1.98
49683098--49683444	141	2.5	141	76	11	311	28	19	28	24	1.98
49683386--49683514	49	2.6	49	86	0	195	28	20	27	23	1.99
49690263--49690478	39	5.5	39	88	1	272	29	18	25	27	1.98
49690262--49690478	117	1.9	117	88	1	328	29	17	25	27	1.98
49691698--49691759	31	2.0	31	100	0	124	19	9	22	48	1.78
49696403--49696756	94	3.8	93	80	7	362	26	20	30	22	1.98
49696399--49696756	47	7.6	45	73	12	233	26	20	30	22	1.98
49704242--49704322	42	1.9	42	97	0	153	38	6	4	50	1.49
49704423--49704503	40	2.0	40	100	0	162	20	14	14	49	1.79
49705118--49705160	22	1.9	23	86	13	63	53	2	0	44	1.13
49705430--49705563	44	3.0	44	100	0	268	25	20	4	50	1.67
49705620--49705677	24	2.4	24	88	5	82	50	0	32	17	1.46
49727194--49727241	25	1.9	25	83	8	62	81	2	10	6	0.95
49730175--49730277	50	2.1	49	94	3	181	33	12	5	48	1.65
49733017--49733054	20	2.0	20	84	5	51	50	5	10	34	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49733690--49733728	3	13.0	3	88	0	60	0	5	61	33	1.18
49737982--49738030	24	2.0	24	92	0	80	46	18	8	26	1.76
49737982--49738038	24	2.4	24	85	5	62	45	19	10	24	1.81
49741088--49741131	12	3.6	12	93	3	70	81	0	0	18	0.68
49741091--49741134	17	2.5	17	92	3	70	81	0	0	18	0.68
49742444--49742488	22	2.1	22	84	12	58	35	0	11	53	1.37
49743208--49743370	87	1.9	86	85	3	229	27	13	20	38	1.90
49744868--49744907	12	3.3	12	85	0	53	30	30	2	37	1.71
49773035--49773207	46	3.7	46	79	7	215	30	27	20	21	1.98
49773040--49773210	93	1.8	93	96	0	315	29	28	20	21	1.98
49780639--49780808	92	1.8	93	94	1	306	28	28	21	21	1.99
49780634--49780805	46	3.7	46	77	14	201	29	27	20	22	1.99
49786855--49786975	47	2.6	46	84	11	149	29	18	28	23	1.97
49786858--49787219	49	7.6	48	72	10	212	28	18	27	24	1.98
49786904--49787157	142	1.8	140	81	5	323	29	19	26	24	1.98
49787042--49787221	98	1.8	97	85	3	254	27	18	29	24	1.98
49795231--49795264	16	2.1	16	88	0	50	8	32	2	55	1.45
49805454--49805492	18	2.2	18	85	0	51	23	2	12	61	1.43
49806114--49806172	24	2.4	25	76	18	61	11	5	8	74	1.20
49814640--49814706	33	2.0	33	100	0	134	40	2	2	53	1.31
49814755--49814813	28	2.1	28	100	0	118	47	6	6	38	1.57
49815045--49815077	3	11.0	3	100	0	66	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49815711--49815753	17	2.5	17	81	7	52	30	6	0	62	1.21
49817095--49817127	5	6.6	5	100	0	66	18	0	0	81	0.68
49818166--49818212	21	2.2	22	92	3	78	21	38	19	21	1.94
49823562--49823643	22	3.8	21	77	7	83	17	9	9	63	1.51
49823562--49823637	11	6.9	11	66	0	53	17	10	9	63	1.51
49826506--49826666	6	27.0	6	68	16	59	60	3	6	28	1.39
49826506--49826546	15	2.7	15	88	0	64	63	0	4	31	1.15
49826510--49826567	24	2.4	24	82	0	71	56	1	6	34	1.36
49826741--49827027	149	2.0	144	81	13	340	58	4	5	30	1.42
49826922--49827182	3	85.0	3	66	20	57	61	4	3	30	1.34
49827150--49827205	22	2.6	21	85	5	67	53	1	5	39	1.34
49828013--49828060	23	2.1	23	84	0	60	56	18	2	22	1.52
49843769--49843813	22	2.0	22	86	0	63	28	8	6	55	1.56
49844178--49844230	25	2.1	25	96	0	97	33	18	15	32	1.92
49847262--49847305	9	4.9	9	91	0	61	86	4	0	9	0.70
49848458--49848945	177	2.8	176	89	1	744	30	19	21	28	1.98
49852460--49852726	91	2.9	91	85	3	358	47	11	8	32	1.71
49853800--49853931	67	2.0	67	86	2	187	28	19	14	37	1.91
49860380--49860430	25	2.0	25	88	0	75	37	15	5	41	1.72
49870202--49870410	31	6.8	31	89	1	287	27	17	26	28	1.98
49870202--49870410	92	2.3	92	87	1	294	27	17	26	28	1.98
49870428--49870545	47	2.5	46	84	2	146	27	15	26	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49872288--49872342	21	2.6	21	82	0	56	50	20	14	14	1.77
49879540--49879577	15	2.6	14	88	12	58	31	0	0	68	0.90
49879941--49879972	13	2.5	13	100	0	64	40	15	6	37	1.73
49880311--49880382	19	3.6	19	73	15	65	36	5	2	55	1.38
49881473--49881547	32	2.4	32	80	10	91	36	0	0	64	0.94
49881498--49881546	16	3.1	16	75	18	50	34	0	0	65	0.93
49881497--49881548	15	3.4	15	75	19	54	36	0	0	63	0.95
49884466--49884531	16	4.4	16	70	24	63	57	1	19	21	1.49
49884461--49884546	43	2.0	43	93	0	145	54	1	19	24	1.51
49887739--49887780	21	2.0	21	81	9	50	64	7	0	28	1.20
49887838--49887877	21	1.9	21	84	0	53	70	7	7	15	1.33
49892941--49893260	175	1.8	176	84	8	447	27	23	17	31	1.97
49893134--49893398	147	1.8	146	86	5	383	28	23	16	31	1.96
49892935--49893574	322	2.0	321	86	2	910	27	22	16	32	1.96
49893266--49893987	175	4.1	177	83	5	813	26	23	18	31	1.97
49893776--49893866	44	2.0	45	81	6	105	27	26	15	30	1.96
49893265--49893987	352	2.1	351	84	4	931	26	23	18	31	1.97
49893301--49894191	175	5.1	175	79	6	806	27	23	19	29	1.98
49893265--49894103	352	2.4	351	82	6	912	27	23	18	30	1.98
49894369--49894495	64	2.0	63	90	1	200	37	13	18	31	1.89
49895616--49895662	9	5.2	9	97	0	85	10	0	8	80	0.89
49902413--49902649	47	5.1	47	92	1	343	34	10	29	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49902488--49902559	22	3.1	22	64	24	58	33	13	29	23	1.93
49902531--49902606	22	3.3	22	66	28	59	34	11	28	25	1.91
49902623--49902759	46	3.0	46	91	0	220	34	8	31	25	1.86
49904246--49904480	40	5.9	40	92	0	389	21	22	29	26	1.99
49904644--49904696	25	2.1	25	82	6	63	35	13	30	20	1.91
49908450--49908647	25	8.3	25	68	21	147	35	10	26	27	1.89
49908479--49908597	22	5.1	22	65	25	66	33	12	28	25	1.92
49908404--49908622	47	4.7	47	95	0	368	35	10	27	26	1.89
49908496--49908712	119	1.8	119	89	2	346	35	10	27	26	1.89
49908543--49908676	72	1.9	72	96	0	250	35	10	27	26	1.89
49908615--49908712	47	2.1	47	81	7	110	35	9	28	26	1.87
49908686--49908822	46	3.0	46	89	0	211	35	8	30	25	1.85
49914102--49914284	46	4.0	46	89	0	258	26	30	9	34	1.88
49914255--49914589	47	7.1	47	92	0	492	25	28	11	34	1.91
49914351--49914469	22	5.1	22	62	28	59	25	29	13	31	1.94
49914417--49914494	25	3.2	25	64	29	69	29	29	10	30	1.90
49914421--49914495	23	3.2	23	63	29	59	28	29	10	32	1.90
49917396--49917539	39	3.7	39	91	0	243	27	28	23	20	1.99
49925346--49925528	39	4.7	39	93	0	321	28	28	22	19	1.98
49933866--49933918	24	2.2	24	82	0	61	37	15	15	32	1.88
49937408--49937528	31	3.5	31	71	21	89	28	16	9	44	1.80
49937420--49937501	42	2.0	42	95	2	148	31	17	7	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49937460--49937528	31	2.2	31	86	2	93	28	15	8	46	1.76
49938949--49938990	21	2.0	22	85	4	59	33	16	9	40	1.81
49942130--49942170	21	1.9	22	85	5	57	24	7	29	39	1.82
49942130--49942196	21	3.2	21	75	14	50	25	7	31	35	1.84
49942147--49942204	21	2.8	21	73	5	55	27	10	27	34	1.89
49943665--49943689	4	6.2	4	100	0	50	76	0	24	0	0.80
49946611--49946654	20	2.2	21	84	8	56	36	0	4	59	1.18
49948298--49948353	21	2.7	22	74	20	57	57	1	1	39	1.20
49957110--49957182	37	2.0	37	81	5	85	30	15	16	38	1.89
49960035--49960097	30	2.1	30	93	0	108	58	15	1	23	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250