genome.fa.s9.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  113  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36214755--36214832	10	7.7	10	76	17	72	71	0	1	26	0.93
36214755--36214832	18	4.4	18	70	22	58	71	0	1	26	0.93
36214776--36214835	8	7.0	8	78	17	59	68	0	0	31	0.90
36214755--36214815	28	2.2	27	85	2	77	72	0	1	26	0.94
36214783--36214834	16	3.2	15	82	17	68	69	0	0	30	0.89
36214776--36214847	18	4.1	18	73	12	60	65	0	1	33	1.02
36214781--36214873	34	2.7	35	81	8	109	63	0	2	34	1.07
36216925--36217030	44	2.5	42	81	6	106	25	18	26	29	1.98
36216963--36217074	43	2.6	43	83	5	129	26	17	23	32	1.97
36216965--36217074	42	2.6	42	82	4	132	26	18	23	31	1.97
36221890--36221947	20	2.9	20	78	14	66	37	15	13	32	1.87
36222109--36222179	26	2.9	26	73	12	69	26	23	23	25	2.00
36222384--36222429	23	2.0	24	86	4	67	47	13	2	36	1.54
36225596--36225722	46	2.7	48	85	4	161	31	18	25	25	1.97
36225596--36225791	94	2.1	94	79	5	209	31	15	26	27	1.96
36232916--36233011	48	2.0	48	97	0	183	29	28	12	30	1.93
36236620--36236731	55	2.0	55	98	0	215	30	24	16	28	1.97
36237529--36237557	13	2.1	14	93	6	51	31	24	0	44	1.54
36244661--36244729	15	4.6	15	83	0	84	11	17	13	57	1.64
36244652--36244739	30	3.0	30	81	8	99	10	17	15	56	1.66
36248875--36248910	18	2.0	18	94	0	63	41	5	22	30	1.76
36251720--36251885	48	3.5	47	80	9	151	28	21	27	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36263669--36263725	20	2.8	20	79	10	62	38	15	12	33	1.85
36265716--36265775	27	2.2	27	81	0	75	50	23	13	13	1.77
36265737--36266003	27	9.9	27	85	1	320	41	19	13	25	1.87
36265737--36266003	81	3.3	81	86	3	385	41	19	13	25	1.87
36267771--36267803	16	2.1	16	88	11	50	33	0	0	66	0.92
36267822--36267860	20	1.9	20	84	5	51	25	25	20	28	1.99
36273767--36273797	13	2.4	13	100	0	62	19	41	25	12	1.87
36278046--36278095	21	2.4	21	76	3	57	48	16	2	34	1.57
36285380--36285586	53	3.8	54	78	3	211	20	23	17	38	1.93
36289468--36289631	42	3.9	42	78	9	163	29	28	14	28	1.95
36291903--36291942	21	1.9	21	84	0	53	52	25	2	20	1.59
36293094--36293642	48	11.4	48	95	0	963	30	27	7	34	1.84
36297021--36297153	29	4.7	29	77	6	137	32	30	16	21	1.95
36297159--36297389	40	5.8	40	89	1	340	27	30	21	20	1.98
36298107--36298415	48	6.4	48	93	0	512	29	27	8	34	1.86
36304022--36304338	27	11.7	27	87	3	370	40	21	8	29	1.82
36304320--36304443	27	4.6	27	86	4	178	40	18	14	26	1.89
36304076--36304419	54	6.4	54	78	8	261	39	20	9	29	1.84
36304023--36304433	81	5.1	80	78	6	310	40	20	9	29	1.85
36314119--36314343	79	2.8	80	82	10	255	25	22	27	25	2.00
36314119--36314343	40	5.7	40	87	5	271	25	22	27	25	2.00
36314119--36314343	119	1.9	120	82	8	289	25	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36314126--36314376	79	3.2	78	79	12	253	27	21	26	25	1.99
36318490--36318653	42	3.9	42	80	9	172	28	28	14	28	1.95
36320717--36321022	140	2.2	141	96	1	560	33	22	6	37	1.79
36321063--36321102	21	2.0	20	85	5	53	50	27	2	20	1.61
36325259--36325545	27	10.6	27	81	9	250	40	22	7	28	1.81
36325259--36325547	54	5.4	54	83	5	325	40	22	7	29	1.82
36325259--36325548	81	3.6	81	83	5	356	40	22	7	29	1.82
36325311--36325547	27	8.7	27	88	4	325	40	22	6	29	1.80
36325337--36325672	81	4.2	80	77	10	247	39	20	10	28	1.86
36325499--36325670	54	3.2	54	79	6	152	40	18	13	27	1.88
36325530--36325653	27	4.6	27	85	4	169	40	19	13	26	1.89
36326296--36326347	27	2.0	26	84	3	68	17	26	21	34	1.95
36329306--36329468	42	3.9	42	78	7	170	31	26	11	29	1.92
36336899--36337062	42	3.9	42	80	9	172	28	27	14	29	1.95
36339333--36339375	21	2.1	21	86	4	61	48	23	2	25	1.62
36344614--36344740	39	3.3	39	83	2	166	23	26	18	31	1.97
36344614--36344741	38	3.3	38	82	7	159	23	27	17	31	1.97
36350336--36350440	39	2.6	39	86	5	122	24	22	27	24	2.00
36350299--36350440	40	3.6	40	79	12	141	25	22	27	24	2.00
36350349--36350440	39	2.3	39	88	5	132	23	22	28	25	2.00
36350665--36350973	47	6.6	47	94	0	519	31	8	30	29	1.87
36357916--36358009	40	2.3	40	87	0	125	35	26	17	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36362423--36362563	56	2.5	58	81	4	153	32	19	19	28	1.96
36367202--36367369	46	3.6	46	78	10	182	21	26	20	30	1.98
36367203--36367372	93	1.8	92	85	8	238	21	26	21	30	1.98
36369045--36369109	32	2.0	32	96	0	121	27	24	21	26	1.99
36375541--36375703	42	3.9	42	81	6	152	30	15	24	30	1.95
36399200--36399261	25	2.5	25	84	2	72	30	16	16	37	1.90
36404369--36404416	20	2.3	20	75	10	53	39	4	2	54	1.32
36406954--36406988	18	1.9	18	88	11	54	48	17	0	34	1.47
36407699--36407724	12	2.2	12	100	0	52	7	7	15	69	1.35
36419430--36419616	40	4.7	40	82	5	227	24	21	27	26	1.99
36419432--36419649	79	2.7	80	77	9	241	25	21	27	26	1.99
36426672--36426781	47	2.3	47	95	0	193	29	29	8	33	1.86
36428629--36428653	13	1.9	13	100	0	50	36	16	16	32	1.90
36430817--36430927	58	2.0	54	82	7	132	34	25	15	25	1.95
36431077--36431160	43	2.0	43	85	4	116	33	30	20	15	1.94
36431148--36431388	40	6.0	40	84	0	302	28	27	20	23	1.99
36431148--36431388	80	3.0	80	88	1	340	28	27	20	23	1.99
36433237--36433390	47	3.3	47	93	0	272	29	29	7	33	1.84
36435241--36435265	13	1.9	13	100	0	50	36	16	16	32	1.90
36437702--36437909	40	5.2	40	82	7	244	24	20	27	26	1.99
36437702--36437897	79	2.5	80	83	7	254	24	20	28	27	1.99
36437706--36437923	79	2.7	78	78	12	228	24	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36439836--36439943	27	4.0	26	83	8	119	36	22	22	19	1.95
36440102--36440159	22	2.6	22	88	0	80	36	22	24	17	1.95
36440178--36440223	20	2.3	20	100	0	92	32	36	26	4	1.76
36440507--36441073	27	21.0	27	87	0	794	24	20	19	34	1.96
36455760--36455936	46	3.9	44	78	12	150	22	30	20	25	1.98
36458544--36458600	30	1.9	30	85	7	80	61	15	7	15	1.54
36458544--36458599	15	3.7	15	77	20	55	62	16	7	14	1.52
36461114--36461271	29	5.5	29	91	2	230	33	25	12	28	1.92
36473929--36474169	48	4.9	50	89	5	364	36	5	26	32	1.79
36474319--36474427	38	2.9	37	95	2	200	24	18	32	24	1.97
36475684--36476082	40	10.0	40	87	0	564	22	21	28	27	1.99
36476246--36476296	25	2.0	25	81	7	59	33	13	31	21	1.92
36479511--36479751	48	4.9	50	90	5	373	36	5	26	31	1.79
36479901--36480045	37	3.9	37	96	0	254	24	19	31	25	1.98
36483530--36483686	43	3.7	42	75	10	124	22	19	24	34	1.96
36488478--36488653	46	3.8	45	74	7	174	19	20	29	30	1.97
36488472--36488646	93	1.9	93	91	0	287	20	20	30	29	1.97
36494784--36494955	93	1.8	93	96	0	317	27	29	22	20	1.99
36494777--36494952	46	3.8	46	79	12	216	28	28	21	20	1.98
36503244--36503288	22	2.1	22	83	4	56	35	13	24	26	1.92
36504329--36504558	27	8.5	26	87	4	273	23	21	18	36	1.95
36504338--36504550	107	2.0	108	90	2	340	23	21	18	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36504542--36504748	27	7.7	27	78	3	159	31	8	20	38	1.83
36504342--36504588	134	1.8	132	83	6	327	25	19	18	36	1.95
36510083--36510369	50	5.9	50	76	6	266	26	17	30	25	1.97
36510087--36510319	95	2.4	99	81	5	260	26	17	31	25	1.97
36515741--36515969	53	4.3	54	75	5	196	38	17	24	20	1.92
36525206--36525347	53	2.6	53	78	4	142	39	19	21	19	1.93
36529415--36529606	53	3.7	52	82	8	203	22	24	18	34	1.96
36529415--36529669	55	4.8	53	78	8	202	22	24	17	36	1.95
36529462--36529659	108	1.8	110	83	4	267	23	24	17	34	1.96
36542458--36542671	46	4.6	44	74	10	133	27	18	28	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250