genome.fa.s9.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  32  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9560656--9560692	6	6.2	6	90	0	56	16	64	18	0	1.29
9562589--9562642	25	2.1	26	96	3	101	29	7	3	59	1.42
9567364--9567421	25	2.3	25	84	0	71	46	1	3	48	1.29
9576196--9576249	23	2.3	23	100	0	108	38	3	14	42	1.64
9576196--9576260	23	2.8	23	90	0	67	41	3	15	40	1.63
9581212--9581237	12	2.2	12	100	0	52	65	0	7	26	1.20
9584748--9584795	23	2.1	23	100	0	96	37	8	8	45	1.64
9591300--9591341	21	2.0	22	85	4	59	47	4	7	40	1.52
9599796--9599884	41	2.2	41	91	0	142	19	11	30	39	1.86
9602096--9602145	22	2.3	22	78	0	55	58	14	16	12	1.64
9602844--9602982	24	5.4	26	70	19	87	59	5	4	30	1.38
9602893--9602947	27	2.0	27	82	10	67	60	5	0	34	1.20
9602971--9603012	21	2.0	22	86	13	61	61	4	0	33	1.17
9604561--9604611	20	2.6	20	88	11	79	54	3	9	31	1.51
9607987--9608104	43	2.8	42	81	7	157	27	23	15	33	1.95
9610239--9610293	29	1.9	29	88	3	85	34	27	21	16	1.95
9610630--9610667	16	2.4	16	100	0	76	31	23	0	44	1.54
9614054--9614116	20	3.4	19	77	12	60	34	3	1	60	1.22
9629458--9629526	13	5.2	13	80	3	84	33	21	0	44	1.53
9629458--9629526	27	2.6	26	86	4	102	33	21	0	44	1.53
9631407--9631462	26	2.2	26	100	0	112	35	26	10	26	1.89
9633793--9633876	44	1.9	44	90	0	132	27	26	3	42	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9637189--9637232	13	3.4	12	81	12	52	31	18	2	47	1.61
9646037--9646081	20	2.2	20	88	0	63	35	13	2	48	1.54
9649506--9649720	50	4.3	50	81	4	236	28	12	20	39	1.88
9649506--9649720	100	2.2	100	85	2	288	28	12	20	39	1.88
9663826--9663893	18	3.8	18	75	14	77	41	4	16	38	1.68
9664342--9664373	5	6.6	5	92	7	57	40	0	0	59	0.97
9664341--9664386	13	3.4	14	82	14	60	45	0	0	54	0.99
9668260--9668362	37	2.8	37	96	0	188	24	32	20	23	1.98
9668503--9668648	48	3.0	48	94	0	247	31	28	6	34	1.82
9670837--9672782	970	2.0	970	99	0	3811	31	20	16	31	1.95
9680739--9680774	18	2.0	18	100	0	72	5	33	38	22	1.77
9682772--9682852	27	3.0	27	89	3	110	38	17	14	29	1.90
9682785--9682855	27	2.6	27	93	0	115	40	19	11	28	1.86
9683061--9683185	55	2.3	54	77	11	137	40	18	10	30	1.84
9682838--9683207	27	13.7	27	75	5	248	38	20	10	30	1.86
9683628--9683692	22	3.0	22	80	8	78	20	26	23	30	1.98
9683895--9683942	22	2.2	22	92	0	78	10	14	27	47	1.76
9689153--9689244	42	2.2	42	92	0	148	34	21	14	29	1.93
9689392--9689461	25	2.8	25	86	4	97	24	24	27	24	2.00
9690385--9690515	27	4.7	27	72	15	97	33	7	16	41	1.77
9690441--9690541	27	3.7	27	77	7	91	28	8	19	42	1.81
9690573--9690664	27	3.4	27	83	5	123	41	6	22	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9693773--9693831	31	1.9	31	100	0	118	32	27	10	30	1.89
9693867--9693960	42	2.2	42	90	0	143	35	22	12	29	1.91
9694094--9694152	25	2.4	24	81	10	75	22	23	25	28	1.99
9695554--9695633	15	5.4	15	77	12	76	58	11	18	11	1.61
9698582--9698756	46	3.8	45	79	7	190	29	29	20	21	1.98
9698590--9698761	93	1.8	93	91	0	281	28	29	20	21	1.98
9700730--9700793	27	2.4	27	81	5	76	21	25	17	35	1.95
9700847--9700945	27	3.6	27	78	15	103	36	10	15	38	1.81
9700907--9701005	27	3.8	26	77	7	78	30	9	18	42	1.81
9701025--9701128	27	3.9	27	82	6	106	39	7	22	30	1.82
9701037--9701128	27	3.4	26	85	5	121	40	6	23	29	1.80
9701037--9701173	54	2.5	54	77	4	141	36	7	23	32	1.82
9702334--9702358	12	2.1	12	100	0	50	16	24	20	40	1.91
9702336--9702442	45	2.4	45	90	0	160	22	18	17	41	1.91
9702425--9702467	18	2.3	18	88	4	59	23	20	16	39	1.92
9712050--9712161	43	2.6	43	95	0	206	28	33	27	10	1.90
9712154--9712350	38	5.1	38	88	2	286	28	26	23	20	1.99
9712337--9712364	14	2.0	14	100	0	56	21	21	35	21	1.96
9712299--9712454	52	3.0	52	98	0	294	27	24	26	21	1.99
9712389--9712416	14	2.0	14	100	0	56	21	21	35	21	1.96
9720252--9720637	185	2.1	184	84	8	507	32	11	8	47	1.69
9721194--9721252	29	2.0	29	100	0	118	33	28	23	13	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9721955--9722071	62	1.9	61	86	5	166	50	5	2	41	1.38
9727876--9727954	29	2.8	29	78	1	79	30	30	13	25	1.94
9734405--9734456	18	2.9	18	100	0	104	21	28	32	17	1.96
9738422--9738515	23	4.1	23	85	0	134	22	25	4	47	1.69
9742921--9743014	23	4.1	23	83	0	116	23	25	4	46	1.70
9744957--9745481	261	2.0	261	99	0	1032	35	17	16	31	1.92
9754368--9754414	23	2.0	23	100	0	94	8	29	12	48	1.71
9757375--9757576	111	1.8	111	81	6	257	34	11	16	37	1.84
9760865--9760889	12	2.1	12	100	0	50	60	16	0	24	1.36
9765760--9765878	41	3.0	39	92	6	172	37	18	9	34	1.83
9765775--9765878	41	2.5	41	100	0	208	36	18	10	34	1.85
9768568--9768619	24	2.2	24	89	0	77	55	9	1	32	1.43
9769400--9769463	30	2.1	30	97	0	119	35	31	12	20	1.90
9774389--9774425	18	2.1	18	90	10	58	78	2	0	18	0.87
9775762--9775787	13	2.0	13	100	0	52	53	15	0	30	1.42
9782101--9782126	13	2.0	13	100	0	52	53	15	0	30	1.42
9786042--9786090	20	2.6	18	75	15	53	61	0	4	34	1.15
9786029--9786188	51	3.2	50	89	4	232	56	0	6	36	1.24
9786042--9786208	19	9.6	17	68	20	78	58	0	4	37	1.20
9786044--9786209	51	3.3	49	77	17	155	57	0	5	36	1.22
9786162--9786234	18	4.1	18	71	16	53	60	1	6	31	1.31
9786446--9786481	18	1.9	19	94	5	65	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9786441--9786482	18	2.4	17	84	11	57	38	0	0	61	0.96
9786467--9786663	51	3.9	50	85	4	270	37	6	2	54	1.37
9786466--9786655	101	1.9	102	93	1	328	37	5	2	54	1.36
9792529--9792603	21	3.6	21	75	10	82	54	4	9	32	1.51
9792528--9792619	41	2.3	41	96	1	168	54	5	8	31	1.54
9792662--9792687	12	2.2	12	100	0	52	69	7	0	23	1.14
9792647--9792801	14	11.0	14	66	22	51	60	2	4	32	1.30
9792746--9792802	20	2.7	21	81	13	64	59	1	5	33	1.30
9796842--9796928	30	2.9	30	87	0	120	13	28	31	26	1.94
9799785--9800013	112	2.0	112	84	3	300	37	13	12	35	1.83
9805411--9805436	8	3.2	8	100	0	52	15	0	0	84	0.62
9805403--9805436	16	2.1	16	88	0	50	20	0	0	79	0.73
9808644--9808688	21	2.1	21	100	0	90	17	13	17	51	1.77
9809637--9809739	30	3.4	29	76	11	100	48	4	4	41	1.46
9809630--9809764	60	2.2	61	88	1	200	46	7	3	42	1.49
9809667--9809781	31	3.8	30	75	12	99	46	5	3	45	1.42
9816252--9816433	27	6.8	27	83	1	204	29	24	15	30	1.96
9822701--9822732	15	2.1	15	94	0	55	15	6	9	68	1.36
9829377--9829428	20	2.8	19	82	11	63	38	3	5	51	1.44
9841194--9841234	16	2.5	17	80	11	50	60	4	0	34	1.18
9841191--9841291	20	5.2	19	69	14	55	62	4	0	32	1.17
9843662--9843708	21	2.3	20	79	13	51	29	4	2	63	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9844272--9844363	44	2.2	41	86	5	121	56	4	4	34	1.39
9844317--9844392	24	3.0	25	79	9	75	52	1	2	43	1.23
9845489--9845520	2	16.0	2	100	0	64	50	50	0	0	1.00
9856937--9857517	302	1.9	301	97	1	1101	29	20	15	34	1.93
9862062--9862104	22	2.0	22	100	0	86	51	9	0	39	1.34
9870282--9870330	17	2.9	17	96	0	89	32	0	2	65	1.04
9883735--9883791	30	1.9	30	89	7	89	24	33	26	15	1.95
9885533--9885689	43	3.7	42	75	6	138	27	13	26	33	1.93
9887286--9887504	74	2.7	82	78	15	249	43	10	10	36	1.72
9887469--9887672	79	2.6	78	85	6	236	39	11	14	34	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250