genome.fa.s9.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  186  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58633888--58633919	9	3.6	9	91	0	55	65	0	0	34	0.93
58635115--58635147	7	4.7	7	92	0	57	60	12	0	27	1.32
58636285--58636331	21	2.2	21	88	7	69	46	10	14	27	1.78
58641850--58642159	128	2.4	127	81	1	368	36	18	17	28	1.93
58643221--58643282	28	2.2	29	88	2	90	58	3	1	37	1.24
58646431--58646466	19	1.9	19	88	5	56	47	0	2	50	1.15
58647958--58648020	28	2.2	29	88	8	103	34	11	12	41	1.79
58649825--58649987	52	3.2	50	80	11	149	30	26	15	26	1.96
58649843--58649987	53	2.8	52	87	1	182	31	26	15	26	1.96
58649855--58649987	52	2.5	53	87	1	178	30	27	15	27	1.96
58653053--58653091	11	3.5	11	79	6	51	35	0	2	61	1.10
58653531--58653664	46	2.9	46	97	0	250	41	15	23	18	1.89
58654330--58654407	6	12.8	6	81	12	97	48	15	17	17	1.81
58654525--58654590	27	2.5	26	82	7	78	39	22	21	16	1.92
58654764--58654821	22	2.6	22	86	0	71	32	24	25	17	1.96
58654909--58654991	27	3.1	26	86	5	112	38	21	20	19	1.93
58655191--58655381	27	7.2	27	82	4	201	25	19	19	35	1.95
58655386--58656068	27	25.3	27	82	6	758	40	10	21	27	1.85
58655395--58656068	54	12.5	54	86	5	896	40	10	21	27	1.85
58660068--58660110	16	2.5	17	80	20	54	39	0	6	53	1.28
58664303--58664346	18	2.4	18	80	0	52	63	4	9	22	1.42
58666908--58666976	33	2.1	33	100	0	138	23	17	14	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58667407--58667436	15	2.0	15	93	0	51	40	10	26	23	1.86
58667915--58669094	589	2.0	590	96	1	2161	37	18	14	28	1.90
58672687--58672757	32	2.2	32	92	0	115	39	8	23	28	1.84
58672687--58672757	16	4.4	16	77	10	74	39	8	23	28	1.84
58674489--58674589	50	2.0	50	100	0	202	40	17	15	25	1.90
58674575--58674627	26	2.0	27	85	7	74	24	15	22	37	1.92
58676114--58676221	26	4.2	26	93	0	189	35	24	8	32	1.85
58683727--58683773	25	2.0	25	87	8	71	25	4	6	63	1.36
58684633--58684678	20	2.2	20	85	14	58	26	8	8	56	1.58
58684836--58684873	19	2.1	18	85	14	51	21	7	0	71	1.11
58689914--58689972	25	2.3	24	83	13	66	57	0	6	35	1.25
58691766--58691831	20	3.4	19	77	8	71	56	7	1	34	1.37
58691922--58691988	25	2.7	25	81	6	75	52	5	8	32	1.57
58691920--58692006	25	3.5	25	75	10	72	51	5	8	34	1.55
58693721--58693746	12	2.2	12	100	0	52	0	0	46	53	1.00
58693734--58693806	23	3.2	22	80	5	83	17	2	39	39	1.64
58693750--58693811	23	2.7	23	89	0	88	19	4	40	35	1.73
58694391--58694799	88	4.6	88	88	3	570	36	17	17	28	1.92
58694693--58694727	14	2.5	14	90	0	52	51	5	25	17	1.67
58694301--58694859	178	3.3	176	81	9	574	35	19	16	28	1.93
58694707--58694866	73	2.2	72	88	3	239	32	22	17	27	1.96
58706589--58706655	25	2.7	25	81	6	75	52	5	8	32	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58706587--58706673	25	3.5	25	75	10	72	51	5	8	34	1.55
58706692--58706722	3	10.3	3	92	0	53	64	0	3	32	1.09
58707109--58707173	24	2.7	25	81	11	73	49	7	7	35	1.60
58708322--58708393	22	3.2	22	84	2	90	18	1	37	43	1.59
58708330--58708397	23	3.0	23	84	2	84	20	2	36	39	1.68
58715196--58715243	22	2.2	22	100	0	96	27	22	8	41	1.82
58715369--58715501	50	2.8	46	84	8	185	36	15	22	25	1.93
58715400--58715511	50	2.2	50	96	0	206	35	13	22	28	1.92
58720049--58720531	241	2.0	241	98	0	930	41	11	11	35	1.77
58728445--58728522	37	2.1	36	90	6	122	48	3	3	43	1.39
58728548--58728621	25	3.0	25	80	3	80	66	2	29	1	1.14
58738109--58738228	59	2.0	59	100	0	240	34	28	13	24	1.93
58749071--58749343	132	2.1	132	84	1	359	30	19	16	32	1.95
58749074--58749382	132	2.3	132	79	4	354	31	20	16	31	1.95
58751544--58751582	20	1.9	21	89	5	62	69	2	5	23	1.21
58751570--58751610	14	2.9	14	88	3	55	73	2	2	21	1.07
58753348--58753386	20	1.9	21	94	5	71	30	0	2	66	1.05
58761045--58761090	24	2.0	23	82	4	56	26	4	4	65	1.30
58761287--58761375	28	3.2	27	80	9	99	53	10	7	28	1.62
58765082--58765119	17	2.1	19	85	9	53	36	2	2	57	1.26
58765993--58766033	21	2.0	21	85	0	55	60	7	0	31	1.24
58769351--58769400	25	2.0	24	85	14	66	62	6	0	32	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58769387--58769429	21	2.0	21	86	4	59	72	9	0	18	1.11
58769744--58769778	14	2.5	14	100	0	70	28	14	0	57	1.38
58769980--58770040	21	2.8	23	85	14	94	34	27	24	13	1.93
58769977--58770052	21	3.5	23	80	10	79	36	25	23	14	1.93
58781935--58781971	19	1.9	19	88	0	56	35	2	0	62	1.10
58784582--58784618	17	2.2	17	90	0	56	2	5	13	78	1.03
58785906--58786083	49	3.6	49	92	0	293	25	17	25	30	1.97
58785870--58786083	49	4.3	49	88	2	286	26	18	25	30	1.98
58787504--58787553	26	1.9	26	91	0	82	56	2	14	28	1.49
58792203--58792251	23	2.1	23	84	0	62	26	4	2	67	1.19
58792388--58792615	89	2.6	88	81	2	294	36	10	28	24	1.88
58795449--58795540	45	2.0	45	97	0	175	28	18	8	44	1.79
58796290--58796941	216	3.0	216	96	0	1196	26	13	19	40	1.89
58797917--58798012	26	3.7	25	74	16	70	56	5	7	31	1.49
58798271--58798310	21	2.0	20	85	14	55	62	5	0	32	1.17
58798237--58798342	25	4.2	24	78	12	90	58	5	2	33	1.36
58798296--58798343	17	2.9	16	84	6	60	52	6	2	39	1.39
58799818--58799973	42	3.7	41	75	17	158	24	18	26	30	1.98
58802015--58802130	25	4.8	25	73	12	98	56	5	5	32	1.43
58802123--58802153	14	2.1	15	94	5	55	67	0	0	32	0.91
58802128--58802192	26	2.4	27	79	2	78	56	7	1	33	1.37
58802185--58802316	67	2.0	66	83	5	167	53	4	5	36	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58802199--58802329	67	1.9	69	83	6	169	54	5	5	35	1.46
58802199--58802331	69	1.9	69	83	6	171	54	5	5	35	1.46
58802391--58802495	25	4.2	26	79	17	98	58	5	2	33	1.37
58802449--58802496	17	2.9	16	84	6	60	52	6	2	39	1.39
58802595--58802662	3	22.7	3	85	5	93	61	1	1	35	1.14
58802715--58802857	25	5.8	25	71	10	98	55	4	6	33	1.44
58802850--58802880	14	2.1	15	94	5	55	67	0	0	32	0.91
58802855--58802919	26	2.4	27	79	2	78	56	7	1	33	1.37
58804214--58804362	70	2.1	70	93	3	255	15	4	39	40	1.66
58807655--58807699	5	8.6	5	90	9	72	82	0	0	17	0.68
58807655--58807699	22	2.0	22	100	0	90	82	0	0	17	0.68
58807660--58807695	17	2.1	17	100	0	72	83	0	0	16	0.65
58809040--58809064	12	2.1	12	100	0	50	44	0	8	48	1.32
58813759--58813867	50	2.1	52	88	6	161	31	11	13	43	1.81
58814009--58814082	9	8.7	9	69	25	54	24	1	18	55	1.51
58826227--58826817	293	2.0	293	99	0	1173	47	10	12	29	1.75
58827148--58827175	10	2.8	10	100	0	56	28	53	10	7	1.62
58830972--58831011	21	2.0	20	95	5	71	40	2	0	57	1.12
58830971--58831014	5	8.6	5	90	5	70	38	2	0	59	1.10
58832766--58832792	6	4.5	6	100	0	54	18	18	14	48	1.82
58832772--58832880	45	2.4	45	92	0	182	18	18	20	43	1.89
58832749--58832881	45	2.8	49	80	12	159	18	20	21	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58833038--58833302	18	14.3	18	72	9	147	37	10	13	37	1.81
58833066--58833302	54	4.2	55	75	10	167	36	10	14	37	1.82
58833669--58833717	24	2.0	24	100	0	98	40	0	20	38	1.53
58834900--58834997	33	2.9	33	84	7	108	36	22	10	30	1.87
58835214--58835369	41	3.8	41	89	6	235	28	22	20	28	1.98
58842526--58842623	33	2.9	33	84	7	108	36	22	10	30	1.87
58842840--58842995	41	3.8	41	89	6	235	28	22	20	28	1.98
58847723--58847815	46	2.0	46	95	0	168	33	26	5	34	1.79
58849173--58849214	20	2.0	22	86	9	61	54	0	0	45	0.99
58851272--58851314	17	2.6	16	89	10	68	60	0	2	37	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250