genome.fa.s9.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  15  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4357978--4358016	15	2.5	16	87	8	62	30	0	0	69	0.89
4357978--4358016	16	2.5	15	84	15	53	30	0	0	69	0.89
4357942--4358030	32	3.0	30	73	11	78	30	2	2	65	1.17
4359741--4359778	3	12.7	3	94	0	67	31	2	0	65	1.06
4359905--4359991	34	2.5	34	80	15	83	26	9	6	57	1.55
4365065--4365111	14	3.4	14	82	8	51	2	17	2	78	0.94
4370396--4370421	5	5.2	5	100	0	52	38	0	0	61	0.96
4370969--4371009	17	2.4	17	84	8	57	51	39	2	7	1.43
4372063--4372143	22	3.7	22	68	14	60	29	9	1	59	1.38
4372630--4372688	21	2.9	21	78	12	68	27	10	3	59	1.46
4372625--4372746	65	1.9	65	81	3	147	28	11	4	55	1.53
4372739--4372784	15	3.1	15	87	0	65	23	2	8	65	1.32
4372738--4372784	18	2.6	18	79	0	58	23	4	8	63	1.40
4373113--4373164	6	8.2	6	78	18	52	17	3	0	78	0.89
4373113--4373164	13	4.1	12	77	18	52	17	3	0	78	0.89
4373113--4373164	19	2.7	20	82	5	63	17	3	0	78	0.89
4377712--4377835	66	1.9	66	86	3	178	19	28	26	25	1.99
4377723--4377848	66	1.9	66	83	0	162	19	26	26	26	1.99
4386584--4386729	43	3.4	43	75	12	147	28	15	23	31	1.96
4395028--4395086	31	2.0	30	83	12	77	32	5	13	49	1.64
4395583--4395662	29	2.7	29	80	5	88	45	12	8	33	1.73
4396194--4396326	70	1.9	67	83	4	167	34	12	10	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4398451--4398499	19	2.5	20	87	12	75	40	6	0	53	1.26
4398576--4398606	11	2.8	11	90	0	53	25	0	16	58	1.38
4398636--4398696	22	2.6	24	80	15	65	32	11	1	54	1.46
4402637--4402726	44	2.0	44	86	0	126	36	11	5	46	1.63
4404248--4404286	21	1.9	20	84	5	51	25	0	2	71	0.98
4404899--4404963	32	2.0	32	100	0	130	30	6	24	38	1.80
4408992--4409025	17	2.0	17	94	0	59	44	50	0	5	1.26
4413620--4413653	17	2.0	17	94	0	59	44	50	0	5	1.26
4425632--4425702	35	2.0	35	97	0	133	26	35	25	12	1.92
4426436--4426571	9	15.6	9	69	9	50	5	11	3	78	1.05
4426428--4426530	42	2.5	41	79	14	104	6	12	1	78	1.02
4426562--4426586	13	1.9	13	100	0	50	0	12	8	80	0.92
4433907--4433977	35	2.0	35	97	0	133	26	35	25	12	1.92
4436896--4436939	19	2.4	18	85	11	54	38	0	2	59	1.10
4444791--4444827	13	2.9	12	92	8	56	35	0	8	56	1.29
4445311--4445367	28	2.0	28	86	0	78	31	26	7	35	1.83
4445492--4445532	14	3.1	14	76	20	52	17	36	0	46	1.48
4451165--4451239	6	12.3	6	74	13	64	49	13	18	18	1.79
4451191--4451260	19	3.7	19	81	11	81	45	12	21	20	1.84
4451174--4451264	37	2.5	37	85	0	110	48	10	20	19	1.79
4451712--4451770	22	2.7	22	78	0	64	33	22	22	22	1.97
4451878--4451967	28	3.3	28	89	4	139	35	22	22	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4452193--4452308	54	2.1	54	80	3	126	28	18	16	36	1.93
4452222--4452308	27	3.2	27	91	0	138	27	17	16	39	1.90
4452299--4452808	27	18.9	27	82	1	529	40	9	21	29	1.84
4455157--4455203	22	2.2	21	84	3	58	36	21	8	34	1.84
4455176--4455226	19	2.9	16	78	18	57	35	17	9	37	1.83
4455174--4455216	19	2.1	21	91	8	72	34	18	9	37	1.83
4455637--4455986	134	2.6	134	87	2	416	27	23	18	30	1.98
4455708--4455986	134	2.1	134	93	0	468	27	24	18	30	1.98
4455620--4456557	353	2.7	350	78	7	914	27	23	18	31	1.97
4455982--4456224	130	1.9	132	81	10	302	26	21	17	34	1.95
4456175--4456464	44	6.6	45	76	9	285	28	25	16	29	1.97
4456175--4456420	87	2.8	87	90	1	359	28	25	17	29	1.97
4455814--4456552	219	3.4	219	75	12	644	26	23	17	31	1.97
4456253--4456565	132	2.4	132	93	1	529	26	25	17	30	1.97
4457469--4457515	20	2.3	20	82	7	60	4	12	0	82	0.80
4463152--4463249	19	5.2	19	90	7	155	36	15	10	37	1.81
4463162--4463249	36	2.4	37	90	7	142	37	14	11	36	1.83
4463152--4463259	36	2.9	35	75	20	103	37	14	10	37	1.80
4463579--4463641	28	2.2	28	88	0	90	31	28	6	33	1.82
4464618--4464674	27	2.2	26	87	6	80	47	5	14	33	1.66
4465669--4465780	27	4.2	26	86	7	143	36	22	24	16	1.94
4465669--4465780	54	2.1	54	88	3	163	36	22	24	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4467391--4467521	25	5.2	25	91	8	205	35	24	5	35	1.78
4467391--4467521	49	2.6	50	89	8	205	35	24	5	35	1.78
4471495--4471606	27	4.2	26	86	7	143	36	22	24	16	1.94
4471495--4471606	54	2.1	54	88	3	163	36	22	24	16	1.94
4473227--4473336	26	4.2	26	94	0	184	36	24	5	33	1.79
4474689--4474731	21	2.0	21	86	0	59	32	11	27	27	1.92
4477805--4477877	30	2.5	29	81	2	92	34	6	28	30	1.83
4478189--4478379	30	6.4	30	80	8	155	38	12	24	25	1.89
4484817--4484850	12	2.8	12	95	0	59	61	0	14	23	1.33
4485728--4485775	20	2.5	20	82	3	62	62	2	4	31	1.26
4485762--4485805	17	2.4	18	77	14	54	56	9	0	34	1.31
4485775--4485835	15	4.1	15	77	16	56	50	13	0	36	1.41
4486471--4486636	89	1.9	89	82	2	208	37	12	24	25	1.90
4486474--4486630	59	2.6	59	83	4	172	36	12	24	26	1.91
4486369--4486636	30	9.0	30	76	5	177	36	13	24	25	1.92
4488669--4488719	25	2.1	25	89	10	79	31	15	3	49	1.63
4491291--4491334	22	2.0	22	86	0	61	43	22	9	25	1.82
4496634--4496658	13	1.9	13	100	0	50	44	16	24	16	1.86
4496648--4496741	49	1.9	49	86	0	134	36	13	20	29	1.91
4502081--4502165	42	2.0	43	93	2	145	29	10	17	42	1.83
4509527--4509577	18	2.8	18	81	0	66	29	19	27	23	1.98
4515793--4515817	12	2.1	12	100	0	50	16	0	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4520228--4520264	5	7.8	5	88	11	60	18	0	0	81	0.70
4520232--4520258	13	2.1	13	100	0	54	14	0	0	85	0.61
4520228--4520263	18	2.0	18	100	0	72	16	0	0	83	0.65
4526382--4526568	48	3.9	48	81	1	223	35	25	15	23	1.94
4526383--4526568	96	1.9	96	87	2	275	35	25	15	23	1.94
4529070--4529096	9	3.0	9	100	0	54	66	0	0	33	0.92
4531163--4531195	11	2.8	12	86	9	50	36	0	3	60	1.12
4553249--4553309	30	2.0	31	81	9	72	68	0	6	24	1.13
4553294--4553341	15	3.4	13	78	16	51	77	2	0	20	0.88
4562031--4562157	63	2.0	63	81	1	148	27	7	29	35	1.85
4563133--4563265	21	6.3	21	83	0	131	40	0	32	26	1.61
4563155--4563265	7	15.9	7	90	0	114	38	0	34	27	1.57
4563133--4563265	14	9.5	14	85	0	122	40	0	32	26	1.61
4566838--4566891	27	2.1	24	86	10	72	31	1	0	66	1.02
4567051--4567098	22	2.2	22	81	7	53	37	2	2	58	1.22
4567053--4567101	12	4.4	11	77	12	55	36	2	2	59	1.21
4569309--4569360	19	2.7	21	77	16	60	48	0	1	50	1.12
4574312--4574363	24	2.2	24	89	0	77	55	9	1	32	1.43
4582765--4582818	27	2.0	27	96	0	99	46	11	9	33	1.71
4583382--4583416	17	2.1	17	100	0	70	40	17	5	37	1.73
4583967--4584021	28	2.0	28	100	0	110	16	10	14	58	1.64
4586092--4586154	16	3.9	15	73	17	54	68	1	23	6	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4586080--4586152	34	2.1	34	89	0	119	67	1	24	6	1.23
4587644--4587838	95	2.0	96	97	2	367	34	26	16	22	1.95
4599826--4599868	6	7.0	6	78	5	50	18	6	0	74	1.04
4601887--4601986	48	2.1	48	84	3	130	27	32	19	22	1.97
4609829--4609858	12	2.5	12	94	0	51	73	0	0	26	0.84
4613379--4613429	24	2.2	24	82	10	61	60	0	1	37	1.08
4617424--4617450	2	13.5	2	100	0	54	51	0	0	48	1.00
4617815--4617898	33	2.6	33	83	9	118	34	5	10	48	1.62
4618254--4618305	15	3.2	15	73	19	50	44	0	0	55	0.99
4618263--4618303	19	2.1	20	86	4	57	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250