genome.fa.s9.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  49  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15491946--15491984	20	2.0	20	90	10	62	23	17	12	46	1.83
15492071--15492292	40	5.5	40	79	5	214	28	18	23	29	1.97
15495013--15495054	21	2.0	21	95	0	75	28	16	33	21	1.95
15502963--15503023	22	2.8	22	82	7	63	49	0	0	50	1.00
15502997--15503029	16	2.1	16	94	0	57	42	0	0	57	0.98
15505637--15505688	18	3.1	17	79	20	56	26	1	5	65	1.26
15505638--15505693	17	3.2	18	80	17	64	25	1	5	67	1.21
15505647--15505687	16	2.5	15	88	11	55	24	0	4	70	1.06
15505876--15505920	16	2.9	16	78	15	58	62	0	0	37	0.96
15520081--15520146	23	2.8	24	79	4	80	37	18	24	19	1.93
15523417--15523454	17	2.2	17	95	0	67	10	21	44	23	1.83
15531732--15531762	10	3.2	10	90	9	55	48	0	0	51	1.00
15531733--15531763	9	3.3	9	95	4	53	51	0	0	48	1.00
15533829--15535970	713	3.0	713	99	0	4257	30	21	13	33	1.92
15539232--15539343	52	2.2	49	84	4	134	44	12	2	40	1.56
15540013--15540072	21	2.8	21	70	25	54	36	6	20	36	1.79
15547203--15547327	63	2.0	63	98	0	241	36	14	13	35	1.86
15549311--15549370	29	2.0	31	87	6	88	41	1	0	56	1.09
15549463--15549629	85	1.9	84	82	9	203	36	15	9	38	1.80
15549797--15549876	9	8.4	9	71	15	63	66	2	3	27	1.22
15549796--15549907	29	4.2	28	68	22	73	64	2	4	28	1.27
15549796--15549906	49	2.3	46	83	10	134	63	2	4	28	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15550026--15550068	21	2.0	21	100	0	86	23	13	25	37	1.92
15550354--15550729	93	4.1	92	74	13	265	36	9	16	37	1.81
15551037--15551094	29	2.0	29	100	0	116	37	6	6	48	1.57
15552147--15552217	35	2.0	35	100	0	142	25	16	16	40	1.90
15552586--15552611	13	2.0	13	100	0	52	23	23	0	53	1.46
15557401--15557449	21	2.3	20	83	13	55	75	2	14	8	1.12
15557483--15557507	12	2.1	12	100	0	50	76	0	24	0	0.80
15567570--15567827	40	6.5	40	90	2	369	25	27	24	22	2.00
15575771--15575896	38	3.3	39	88	9	181	27	27	23	21	1.99
15585169--15585352	40	4.6	39	83	6	203	24	22	28	25	1.99
15604582--15604622	22	2.0	21	86	13	59	56	0	0	43	0.99
15605673--15605792	39	3.1	39	90	0	177	25	30	20	25	1.99
15612281--15612400	39	3.1	39	85	0	159	24	27	20	27	1.99
15617838--15617871	13	2.6	13	90	9	52	23	2	17	55	1.55
15617842--15617871	13	2.2	14	94	5	53	23	3	16	56	1.55
15619031--15619108	27	2.9	26	84	7	93	12	21	21	43	1.86
15619061--15619120	27	2.2	27	81	0	66	18	30	16	35	1.93
15619125--15619253	45	2.9	45	82	0	159	27	18	12	41	1.87
15625344--15625426	21	4.0	21	83	0	94	39	16	22	20	1.92
15628058--15628314	40	6.5	40	91	3	378	24	28	23	22	1.99
15628058--15628314	79	3.2	80	90	3	378	24	28	23	22	1.99
15628058--15628314	119	2.2	120	87	4	378	24	28	23	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15636265--15636518	40	6.5	40	88	5	342	25	28	23	22	1.99
15636265--15636518	76	3.2	78	86	7	320	25	28	23	22	1.99
15636291--15636510	116	1.9	116	90	1	352	26	29	22	21	1.99
15645300--15645349	21	2.4	21	93	0	82	46	18	34	2	1.60
15658675--15658707	16	2.1	16	100	0	66	21	6	18	54	1.64
15659642--15659691	17	3.0	17	72	16	50	30	4	12	54	1.55
15659868--15659925	29	2.0	29	86	0	80	63	1	1	32	1.14
15659885--15659926	20	2.0	21	90	4	68	66	2	0	30	1.04
15668626--15668672	3	15.7	3	100	0	94	31	0	0	68	0.90
15671066--15671109	23	2.0	23	86	4	63	65	2	0	31	1.05
15671339--15671382	3	14.7	3	100	0	88	68	0	0	31	0.90
15672850--15672946	45	2.2	45	87	7	135	27	24	18	28	1.98
15672597--15673326	176	4.1	176	88	2	1081	29	23	19	27	1.98
15672597--15673367	353	2.2	354	86	3	1117	29	22	19	27	1.98
15685792--15685842	3	17.0	3	100	0	102	66	0	0	33	0.92
15692086--15692269	40	4.6	40	91	2	219	24	21	27	26	1.99
15692085--15692296	80	2.7	80	81	5	241	24	20	27	28	1.99
15695042--15695111	27	2.6	27	95	2	113	31	28	12	27	1.93
15695042--15695139	28	3.5	28	90	2	135	31	28	13	26	1.94
15703123--15703201	37	2.1	37	88	4	115	25	30	18	25	1.98
15703320--15703887	47	12.1	47	95	0	938	28	29	8	32	1.87
15705095--15705137	22	2.0	22	90	0	68	20	13	0	65	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15706898--15706935	19	2.0	19	94	0	67	26	2	26	44	1.67
15713008--15713085	32	2.4	33	78	8	88	37	12	28	21	1.90
15714469--15714807	163	2.1	163	87	1	491	22	26	25	25	2.00
15728189--15728295	29	3.8	29	78	13	105	27	28	16	28	1.97
15731155--15731214	29	2.1	29	100	0	120	28	10	18	43	1.82
15734580--15734627	21	2.2	22	82	14	64	47	2	16	33	1.58
15735277--15735409	33	4.1	33	81	8	157	30	11	20	38	1.87
15735277--15735421	65	2.2	65	83	8	170	30	11	21	37	1.88
15737521--15737644	58	2.2	56	79	2	131	29	14	8	46	1.75
15743584--15743624	21	2.0	21	90	4	66	51	14	0	34	1.43
15744290--15744338	23	2.2	23	92	3	82	65	16	0	18	1.28
15747933--15747989	30	1.9	30	100	0	114	38	0	21	40	1.53
15748354--15748449	43	2.2	43	98	0	183	22	22	34	19	1.97
15751563--15751587	12	2.1	12	100	0	50	16	8	16	60	1.58
15752306--15752517	47	4.6	45	74	13	166	28	20	27	24	1.99
15752300--15752517	94	2.4	91	86	5	278	28	20	27	23	1.99
15753439--15753540	37	2.8	37	95	0	177	26	30	18	24	1.98
15753659--15753881	47	4.7	47	91	1	331	29	30	7	31	1.85
15753734--15753809	22	3.3	22	64	10	62	31	30	7	30	1.86
15759036--15759180	40	3.6	40	83	4	175	26	24	25	23	2.00
15766247--15766271	12	2.1	12	100	0	50	16	8	16	60	1.58
15766701--15766875	56	3.1	56	99	0	341	44	9	23	22	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15768001--15768225	40	5.7	40	85	5	287	24	21	28	25	1.99
15770188--15770498	47	6.6	46	71	13	179	27	18	29	25	1.98
15770176--15770396	94	2.4	93	83	6	254	26	18	30	25	1.98
15771248--15771365	55	2.1	55	80	0	137	22	25	28	23	1.99
15772189--15772382	41	4.7	41	79	5	178	31	26	16	25	1.96
15772189--15772382	82	2.4	81	85	1	244	31	26	16	25	1.96
15773745--15773826	37	2.2	37	95	0	146	26	23	9	40	1.85
15783618--15783689	30	2.4	30	100	0	144	51	8	2	37	1.47
15783636--15783688	16	3.4	16	69	10	56	52	9	3	33	1.52
15784003--15784063	20	3.2	20	75	13	74	54	0	0	45	1.00
15784018--15784057	17	2.4	17	87	4	55	57	0	0	42	0.98
15784570--15784625	29	1.9	29	85	0	76	50	1	1	46	1.22
15789618--15789665	14	3.2	15	78	16	55	14	8	0	77	0.99
15797605--15797675	26	2.7	26	78	4	72	32	18	9	39	1.83
15797821--15797851	6	5.2	6	100	0	62	16	16	0	67	1.23
15814679--15814747	26	2.7	26	79	0	75	27	18	26	27	1.98
15817219--15817254	18	2.0	18	94	0	63	38	19	16	25	1.92
15818839--15818867	14	2.0	15	93	6	51	34	0	27	37	1.57
15823711--15823768	26	2.2	26	90	0	89	41	12	12	34	1.79
15825977--15826022	24	2.0	24	83	8	60	32	15	10	41	1.82
15837369--15837428	22	2.8	20	73	16	57	66	11	5	16	1.40
15845852--15845896	19	2.2	20	84	7	56	33	0	4	62	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15849312--15849486	51	3.5	50	84	6	219	28	29	14	26	1.95
15855606--15855780	51	3.5	50	84	6	219	28	29	15	27	1.96
15861237--15861548	155	2.0	155	98	0	597	43	8	17	29	1.79
15863082--15863145	30	2.2	30	91	2	103	32	21	18	26	1.97
15868859--15868906	25	1.9	25	95	0	87	25	27	22	25	2.00
15874988--15875065	28	2.7	29	80	11	90	28	32	12	26	1.93
15874989--15875099	29	3.9	29	79	3	118	27	31	13	27	1.94
15875046--15875106	29	2.1	29	90	3	97	29	29	13	27	1.94
15879472--15879578	29	3.8	28	83	12	121	24	29	15	29	1.96
15879473--15879590	29	4.1	29	83	6	118	26	27	14	31	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250