genome.fa.s9.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  47  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14901930--14902000	7	10.3	7	75	17	51	21	1	0	77	0.85
14901951--14902047	7	14.7	7	81	14	102	25	2	0	72	0.96
14904486--14904525	10	4.0	10	86	0	62	27	10	2	60	1.42
14910392--14910460	21	3.0	24	64	20	65	26	13	23	37	1.91
14910371--14910460	45	2.0	44	95	2	162	26	13	23	36	1.92
14911932--14911984	20	2.7	20	93	0	88	18	32	35	13	1.90
14915923--14915997	37	2.0	37	100	0	150	33	13	24	29	1.93
14935535--14935579	23	2.0	23	82	8	56	13	8	0	77	0.98
14937839--14937863	7	3.6	7	100	0	50	28	24	0	48	1.52
14938031--14938097	20	3.3	20	72	17	59	20	14	11	52	1.74
14938504--14938593	40	2.2	40	80	7	94	20	16	12	51	1.76
14938624--14938669	20	2.3	21	78	17	53	19	8	10	60	1.55
14939051--14939198	20	7.2	20	68	10	77	18	16	13	51	1.76
14969566--14969620	22	2.5	22	80	8	60	60	0	5	34	1.20
14979144--14979214	32	2.3	29	76	7	79	42	2	2	52	1.31
14991022--14991100	28	2.8	28	86	0	104	34	11	25	29	1.91
15001537--15001581	22	2.2	20	84	8	54	24	0	6	68	1.13
15001495--15001893	117	3.5	114	78	7	366	23	2	15	59	1.47
15002173--15002208	18	1.9	19	88	5	56	27	8	8	55	1.58
15006179--15006215	5	7.2	5	96	3	65	56	0	2	40	1.13
15006641--15006696	23	2.4	23	77	16	62	50	3	0	46	1.19
15014733--15014792	26	2.3	27	80	11	72	45	20	20	15	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15015953--15016021	18	3.8	18	70	0	57	36	13	11	39	1.80
15016863--15016903	17	2.5	17	80	15	50	2	24	0	73	0.96
15017144--15017178	17	2.0	18	88	5	54	54	0	0	45	0.99
15020255--15020280	12	2.2	12	100	0	52	26	30	34	7	1.85
15024592--15024636	19	2.3	21	75	21	53	68	0	0	31	0.89
15025016--15025078	32	2.0	32	81	12	76	31	17	12	38	1.87
15026509--15026578	30	2.3	31	85	7	99	67	2	4	25	1.23
15036445--15036485	12	3.5	12	75	18	50	68	0	4	26	1.10
15038018--15038050	6	5.7	6	92	7	59	36	0	0	63	0.95
15038018--15038050	11	2.8	12	90	9	59	36	0	0	63	0.95
15038018--15038050	17	1.9	17	100	0	66	36	0	0	63	0.95
15038306--15038382	38	2.0	38	82	9	95	62	1	5	31	1.25
15038346--15038396	19	2.8	18	73	11	50	62	0	5	31	1.19
15038347--15038465	26	4.6	25	69	17	75	63	0	5	29	1.23
15038347--15038420	26	2.9	26	82	9	82	63	0	6	29	1.20
15038596--15038637	21	2.0	21	81	9	50	71	2	4	21	1.16
15038980--15039077	18	5.3	18	70	15	51	33	5	1	60	1.26
15039008--15039066	26	2.3	26	79	5	66	37	5	0	57	1.21
15039094--15039143	19	2.5	20	77	6	57	38	2	2	58	1.21
15039096--15039143	20	2.4	21	75	10	55	35	2	2	60	1.20
15039086--15039143	29	2.0	29	87	9	84	32	3	1	62	1.22
15039095--15039164	29	2.5	28	82	11	83	31	2	4	61	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15039687--15039725	6	6.5	6	87	0	51	0	46	0	53	1.00
15039687--15039725	12	3.2	12	88	0	60	0	46	0	53	1.00
15041155--15041196	19	2.3	18	83	4	57	71	4	23	0	1.05
15041143--15041187	23	2.0	23	82	4	56	75	4	17	2	1.07
15048866--15048890	4	6.2	4	100	0	50	24	0	0	76	0.80
15055258--15055299	22	1.9	22	85	0	57	23	0	2	73	0.94
15059126--15059264	3	46.7	3	74	14	92	26	4	5	63	1.36
15059159--15059236	36	2.2	36	84	11	106	25	2	8	62	1.37
15060811--15060851	21	2.0	20	86	13	57	19	2	2	75	1.03
15065650--15065714	22	2.8	23	78	17	71	52	7	1	38	1.40
15065657--15065712	25	2.4	23	82	8	69	55	7	0	37	1.27
15065760--15065805	21	2.1	23	84	8	60	50	6	4	39	1.48
15065854--15065907	21	2.5	21	76	8	56	57	1	3	37	1.27
15066299--15066356	3	19.3	3	100	0	116	67	0	0	32	0.91
15069069--15069097	7	4.1	7	100	0	58	55	0	0	44	0.99
15072249--15072306	25	2.3	25	87	0	98	32	13	17	36	1.89
15074591--15074674	25	3.4	25	88	3	125	30	17	15	35	1.91
15077506--15077588	41	2.0	41	100	0	166	34	21	4	38	1.75
15084120--15084162	22	2.0	22	85	0	59	53	9	16	20	1.70
15084127--15084175	11	4.5	11	76	0	53	51	10	20	18	1.75
15087767--15087801	18	1.9	18	100	0	70	22	31	11	34	1.90
15091059--15091137	37	2.1	37	90	0	122	25	31	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15091256--15091690	47	9.1	47	91	3	690	29	30	8	31	1.88
15091256--15091687	96	4.5	96	94	1	724	29	30	9	31	1.88
15091256--15091690	143	3.0	143	92	2	712	29	30	8	31	1.88
15094372--15094874	126	4.0	126	88	1	726	28	17	17	36	1.93
15094372--15094874	251	2.0	249	89	1	756	28	17	17	36	1.93
15095395--15095483	19	4.8	19	82	10	112	43	20	0	35	1.52
15095395--15095484	35	2.4	37	85	7	121	43	20	0	36	1.52
15095579--15095621	17	2.5	17	88	7	61	55	25	0	18	1.42
15096187--15096240	19	2.8	19	75	10	56	40	3	1	53	1.29
15096590--15096646	3	19.0	3	100	0	114	66	0	33	0	0.92
15101338--15101777	43	10.4	43	76	6	389	20	15	23	40	1.90
15101330--15101777	84	5.3	85	79	4	379	20	15	22	40	1.90
15101324--15101777	127	3.6	126	78	6	447	20	15	22	40	1.90
15106688--15106914	26	8.7	26	80	2	222	29	24	7	37	1.84
15106688--15106894	78	2.6	78	82	0	252	30	25	6	37	1.82
15111637--15111671	18	1.9	18	88	0	52	31	14	5	48	1.67
15115517--15115774	47	5.5	47	80	6	224	25	28	18	27	1.98
15115510--15115774	94	2.8	93	76	10	254	24	28	18	27	1.98
15121652--15121772	47	2.6	45	82	8	138	24	30	16	28	1.97
15124012--15124231	46	4.7	46	75	12	153	27	17	30	24	1.97
15124010--15124208	46	4.3	47	78	14	173	27	17	30	24	1.97
15126450--15126474	6	4.2	6	100	0	50	52	0	16	32	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15129694--15129725	7	4.6	7	100	0	64	15	43	0	40	1.47
15129743--15129788	22	2.0	23	84	12	60	17	6	6	69	1.32
15134312--15134376	34	1.9	34	96	0	121	20	23	12	44	1.84
15146810--15146899	45	2.0	44	89	2	135	30	22	16	31	1.96
15146970--15147158	64	3.0	64	97	0	351	37	16	16	29	1.91
15148264--15148337	24	3.1	23	76	9	69	16	1	9	72	1.16
15148290--15148340	20	2.6	19	82	11	59	17	0	9	72	1.11
15148315--15148348	15	2.3	15	89	0	50	8	0	11	79	0.94
15148287--15148347	19	3.2	19	71	15	54	14	0	8	77	0.99
15150648--15150677	11	2.7	11	94	0	51	30	16	23	30	1.96
15151032--15151121	29	3.1	28	85	4	117	28	26	15	28	1.96
15151334--15151376	16	2.7	16	92	0	68	16	23	11	48	1.78
15155122--15155162	19	2.2	19	86	8	57	46	12	21	19	1.82
15157829--15157880	25	2.1	25	89	3	79	28	19	19	32	1.96
15157836--15157905	25	2.8	25	86	0	86	22	22	25	28	1.99
15158109--15158191	27	3.1	27	89	0	121	26	22	18	32	1.97
15158176--15158330	27	5.8	27	79	8	120	30	8	21	40	1.83
15158207--15158357	27	5.6	28	80	6	150	29	8	19	41	1.81
15158176--15158357	54	3.4	54	78	3	170	30	8	20	40	1.83
15158366--15158640	27	10.2	27	89	0	381	41	9	21	28	1.83
15158232--15158385	81	1.9	81	80	0	182	31	7	21	40	1.80
15158366--15158638	134	2.0	135	87	0	395	41	9	21	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15158350--15158640	81	3.6	81	85	0	422	41	8	20	29	1.82
15160102--15160146	16	2.6	18	86	6	58	53	2	6	37	1.40
15161699--15161869	93	1.8	93	93	0	297	28	28	21	22	1.99
15161691--15161866	46	3.8	46	76	12	198	29	27	20	22	1.98
15163987--15164034	9	5.3	9	80	9	53	12	0	8	79	0.94
15164989--15165047	25	2.5	24	81	13	68	38	11	5	44	1.63
15166167--15166231	34	1.9	34	90	0	103	46	20	12	21	1.83
15168048--15168412	29	12.5	30	80	6	263	23	24	12	40	1.88
15168048--15168427	58	6.5	58	77	4	316	23	24	12	39	1.89
15168045--15168427	87	4.4	86	79	3	318	23	24	12	39	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250