genome.fa.s9.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  156  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50204373--50204404	5	6.4	5	100	0	64	21	18	0	59	1.38
50205906--50205967	27	2.3	26	78	8	70	51	11	0	37	1.38
50206526--50206552	11	2.5	11	100	0	54	0	7	0	92	0.38
50207534--50207590	15	3.7	15	80	17	64	77	0	1	21	0.86
50207539--50207593	11	4.8	11	80	14	67	76	0	1	21	0.88
50207539--50207590	21	2.2	25	87	12	76	76	0	1	21	0.87
50211583--50211642	30	2.0	30	90	0	93	28	25	8	38	1.84
50213975--50214006	10	3.3	10	95	4	57	62	0	6	31	1.20
50214002--50214063	27	2.3	26	78	8	70	51	11	0	37	1.38
50214443--50214477	14	2.4	14	90	4	52	17	5	0	77	0.96
50215178--50215229	21	2.5	21	77	0	59	38	36	11	13	1.81
50216295--50216366	3	24.3	3	85	2	92	1	33	1	63	1.11
50218105--50218139	16	2.2	16	95	5	63	25	5	22	45	1.74
50219430--50219475	24	2.0	24	87	12	69	30	4	0	65	1.12
50219487--50219537	23	2.2	23	89	3	75	49	3	0	47	1.20
50219494--50219538	23	2.0	23	100	0	90	44	4	0	51	1.21
50224254--50224351	47	2.1	47	83	7	119	23	27	22	26	1.99
50227633--50227674	20	2.1	20	100	0	84	30	23	28	16	1.96
50230668--50230744	29	2.6	28	74	10	64	55	2	7	33	1.42
50232256--50232403	74	2.0	74	94	0	260	39	20	12	27	1.89
50243420--50243497	21	3.6	21	71	20	63	48	2	1	47	1.23
50247070--50247129	30	2.0	30	100	0	120	53	13	10	23	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50253213--50253288	23	3.3	21	77	17	62	53	3	1	40	1.27
50254512--50254562	22	2.2	22	86	10	66	41	1	0	56	1.10
50254514--50254598	20	4.6	20	68	21	60	36	1	1	61	1.12
50256385--50256415	14	2.2	14	94	0	53	35	6	16	41	1.74
50256399--50256440	19	2.2	20	95	4	77	28	9	11	50	1.70
50256519--50256562	18	2.4	18	96	0	79	47	2	0	50	1.13
50262101--50262140	14	2.9	14	92	7	64	35	20	12	32	1.90
50267070--50267102	7	4.7	7	100	0	66	84	0	0	15	0.61
50268796--50268853	29	1.9	30	89	6	91	22	12	13	51	1.74
50277634--50277681	24	2.0	26	88	12	75	27	4	6	62	1.38
50288368--50288555	41	4.6	41	93	2	299	27	21	22	27	1.99
50288770--50288867	33	2.9	33	84	7	108	30	10	22	36	1.87
50289996--50290149	52	2.9	51	81	4	173	25	15	26	31	1.96
50294205--50294266	18	3.7	15	72	27	54	54	0	1	43	1.09
50294558--50294598	9	4.4	9	93	3	55	36	2	0	60	1.10
50294565--50294598	3	11.3	3	93	0	59	35	0	0	64	0.94
50299826--50300072	65	3.7	65	76	9	230	32	18	13	35	1.89
50299960--50300205	71	3.6	70	80	3	250	27	18	14	39	1.89
50305652--50305693	20	2.1	20	100	0	84	50	23	4	21	1.68
50312420--50312447	14	2.0	14	100	0	56	50	0	14	35	1.43
50318105--50318136	16	2.0	16	100	0	64	25	6	18	50	1.70
50320819--50321037	90	2.4	90	80	0	231	29	18	25	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50323791--50323824	10	3.5	10	84	8	52	67	5	0	26	1.13
50325296--50325365	20	3.5	20	71	11	63	28	22	21	27	1.99
50327702--50327773	36	2.0	36	97	0	135	43	9	11	36	1.73
50329002--50329087	44	2.0	44	86	2	120	41	10	15	32	1.81
50332923--50332974	23	2.3	23	96	0	95	21	26	21	30	1.98
50332934--50333036	46	2.2	46	83	6	120	27	24	17	31	1.97
50332933--50333046	23	4.9	24	80	10	103	27	24	17	30	1.97
50333343--50333381	20	2.0	20	84	0	51	35	10	20	33	1.86
50334624--50334671	20	2.3	21	85	7	71	41	0	6	52	1.27
50334893--50334933	20	2.0	21	90	4	66	73	0	26	0	0.84
50337105--50337378	46	6.0	46	87	2	345	41	14	24	20	1.89
50337115--50337378	138	1.9	138	87	0	384	41	14	23	19	1.89
50337638--50337669	17	1.9	17	93	6	57	46	0	15	37	1.46
50339885--50340019	42	3.2	42	77	8	116	43	17	22	16	1.87
50339940--50340040	42	2.4	42	81	3	105	43	15	21	18	1.88
50340849--50340967	57	2.1	58	93	1	204	38	10	21	29	1.87
50351942--50351985	22	2.0	22	86	8	63	50	0	4	45	1.22
50357171--50357231	6	10.2	6	94	0	104	47	16	3	32	1.63
50357793--50357825	16	2.1	16	94	0	57	75	0	24	0	0.80
50357906--50357943	13	2.8	13	92	4	58	23	5	5	65	1.34
50360037--50360077	21	2.0	21	95	0	73	29	9	7	53	1.60
50360550--50360686	60	2.3	58	80	8	134	25	17	13	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50361524--50361669	54	2.7	54	81	9	152	32	16	23	27	1.96
50362538--50362598	33	1.9	33	87	9	92	44	1	3	50	1.28
50362549--50362614	32	2.1	32	82	5	80	42	1	3	53	1.25
50362679--50362741	31	2.0	30	82	11	74	39	0	6	53	1.26
50365213--50365446	90	2.6	89	79	7	269	29	6	13	51	1.65
50365485--50365518	16	2.1	17	88	5	52	29	5	5	58	1.45
50368582--50368616	16	2.2	16	94	0	61	37	8	11	42	1.72
50382673--50382735	28	2.3	28	81	5	76	33	3	0	63	1.10
50386379--50386418	20	2.0	20	85	0	53	45	2	10	42	1.51
50389072--50389099	11	2.5	11	100	0	56	17	0	21	60	1.36
50389264--50389293	15	1.9	16	93	6	53	23	0	23	53	1.46
50392791--50392842	18	2.8	18	83	11	61	80	3	1	13	0.93
50394459--50394514	29	1.9	28	86	13	78	62	1	1	33	1.16
50394474--50394518	21	2.1	22	87	4	65	62	0	2	35	1.08
50394479--50394548	33	2.0	36	86	8	101	65	1	2	30	1.15
50394473--50394542	29	2.4	29	82	2	77	62	1	2	32	1.18
50394520--50394550	3	10.3	3	92	0	53	67	3	0	29	1.06
50396540--50396656	43	2.7	43	81	6	148	29	22	14	33	1.94
50400855--50400886	7	4.6	7	96	0	55	15	50	0	34	1.45
50406763--50406833	29	2.6	29	91	6	112	22	1	25	50	1.57
50407004--50407301	125	2.4	127	81	4	327	26	17	27	29	1.97
50406997--50407303	63	4.9	63	76	5	280	26	17	27	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50413649--50413679	16	1.9	16	93	0	53	9	9	9	70	1.33
50417286--50417335	19	2.6	19	96	0	91	48	16	4	32	1.64
50419094--50419146	26	2.0	26	100	0	106	18	22	7	50	1.72
50424217--50424297	42	1.9	42	85	5	110	25	32	19	22	1.98
50427720--50427752	16	2.1	16	94	0	57	51	0	0	48	1.00
50427942--50427973	5	6.4	5	100	0	64	62	0	0	37	0.95
50428440--50428531	44	2.1	44	86	8	125	20	21	23	33	1.97
50431816--50431857	22	1.9	22	85	0	57	40	26	4	28	1.76
50432767--50433173	206	2.0	206	91	1	656	16	16	35	30	1.92
50436317--50436390	17	4.8	15	78	14	71	25	2	1	70	1.09
50439598--50439637	8	4.9	8	84	6	53	80	5	15	0	0.88
50439607--50439652	17	2.7	17	86	10	67	76	4	17	2	1.06
50441492--50441534	17	2.5	18	81	7	54	53	13	2	30	1.53
50442247--50442275	13	2.1	14	93	6	51	13	13	10	62	1.55
50454894--50455307	138	3.0	138	87	3	647	20	24	14	40	1.90
50459391--50459595	73	2.7	74	84	8	243	52	11	5	30	1.61
50459432--50459625	82	2.3	83	90	2	302	52	11	5	30	1.60
50462318--50462371	21	2.6	20	80	8	63	44	1	1	51	1.22
50465533--50465614	43	1.9	43	80	14	98	28	29	19	23	1.98
50465638--50465697	30	2.0	30	96	0	111	28	26	13	31	1.94
50475010--50475089	40	2.0	40	100	0	160	27	12	22	37	1.90
50481702--50481831	64	2.0	65	98	1	253	13	10	13	61	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50487814--50487853	18	2.3	18	84	16	57	60	0	0	40	0.97
50487983--50488082	21	4.7	21	77	11	71	56	2	5	37	1.33
50488001--50488083	43	1.9	43	81	13	100	55	1	6	37	1.32
50489226--50489308	40	2.1	40	97	0	157	24	4	13	57	1.55
50490483--50490542	31	1.9	31	89	0	93	31	5	21	41	1.75
50492255--50492298	11	3.9	11	91	8	63	88	0	11	0	0.51
50492246--50492287	16	2.4	17	84	15	59	85	2	11	0	0.68
50492255--50492298	21	2.1	20	87	8	61	88	0	11	0	0.51
50492255--50492290	16	2.2	16	95	5	63	91	0	8	0	0.41
50492255--50492298	5	7.7	6	87	12	58	88	0	11	0	0.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250