genome.fa.s9.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  13  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3679400--3679712	44	7.1	44	81	2	333	32	15	24	26	1.96
3679663--3679953	78	3.7	78	87	2	433	31	18	24	25	1.97
3679663--3679953	155	1.9	156	88	2	442	31	18	24	25	1.97
3679973--3680080	45	2.4	45	84	0	135	32	12	27	26	1.93
3680270--3680314	23	2.0	23	86	4	65	37	6	17	37	1.76
3683135--3683175	19	2.2	19	100	0	82	31	29	4	34	1.79
3692641--3692705	32	2.0	32	100	0	130	38	24	6	30	1.80
3695794--3695825	15	2.1	15	100	0	64	21	12	6	59	1.55
3696763--3696793	9	3.3	9	91	8	53	22	0	0	77	0.77
3708053--3708107	17	3.2	17	80	12	67	30	5	0	63	1.17
3708050--3708112	21	2.9	21	75	22	58	31	4	0	63	1.15
3708058--3708103	24	1.9	24	86	8	67	30	6	0	63	1.20
3708050--3708158	5	21.4	5	72	20	57	37	2	1	57	1.24
3718374--3718685	40	7.8	40	92	0	507	25	27	21	25	1.99
3719903--3719980	37	2.1	37	85	0	102	28	32	15	24	1.95
3720099--3720398	47	6.3	47	95	1	501	29	28	8	33	1.86
3720099--3720398	96	3.1	94	92	3	501	29	28	8	33	1.86
3720319--3720394	22	3.3	22	64	10	62	27	31	10	30	1.90
3723720--3723767	15	3.2	15	82	5	53	41	0	4	54	1.20
3728545--3730143	801	2.0	798	95	0	2856	33	20	13	31	1.92
3740215--3740242	5	5.6	5	100	0	56	21	0	0	78	0.75
3760413--3760589	43	4.1	43	91	0	273	24	18	33	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3760984--3761034	21	2.4	21	71	12	50	1	49	19	29	1.60
3767862--3768078	9	23.6	9	73	10	134	38	0	12	47	1.48
3767862--3768078	18	12.3	18	75	10	162	38	0	12	47	1.48
3767838--3768109	123	2.3	120	85	6	351	38	1	12	47	1.49
3768183--3768238	15	3.8	15	78	21	73	53	0	0	46	1.00
3768414--3768481	24	2.8	24	86	8	102	45	7	19	27	1.76
3773972--3774006	15	2.3	15	95	0	61	34	8	0	57	1.29
3774778--3775049	41	6.6	41	86	0	364	28	30	19	21	1.97
3775035--3775133	41	2.4	41	81	3	110	25	23	19	32	1.97
3812940--3813133	24	8.0	24	89	4	291	29	20	20	29	1.98
3812960--3813133	49	3.6	49	93	0	296	29	19	20	30	1.97
3813183--3813249	20	3.3	20	89	0	107	32	22	11	32	1.90
3824053--3824274	46	4.7	50	74	10	166	28	18	28	23	1.98
3827857--3828059	40	5.1	40	80	8	200	26	29	22	21	1.99
3827869--3828059	80	2.4	79	84	6	226	26	29	22	21	1.99
3827878--3828059	79	2.3	80	83	4	226	26	29	22	21	1.99
3841018--3841129	56	2.0	56	98	0	215	28	13	8	49	1.72
3844201--3844256	29	1.9	29	85	0	76	39	17	0	42	1.50
3844388--3844436	22	2.2	22	85	7	64	30	2	2	65	1.15
3847476--3847510	17	2.0	17	88	5	52	65	0	0	34	0.93
3850843--3850965	33	3.8	33	72	12	121	28	24	21	26	1.99
3850849--3850994	62	2.4	62	92	1	240	29	23	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3850903--3850994	33	3.1	28	66	22	69	30	23	21	23	1.99
3851283--3851352	25	2.8	25	88	0	104	25	20	24	30	1.99
3852285--3852391	27	3.9	27	73	13	83	30	8	17	42	1.79
3852270--3852451	54	3.3	55	76	7	165	31	9	17	40	1.82
3852368--3852504	27	5.1	27	75	9	127	30	10	20	37	1.87
3852347--3852471	54	2.3	54	84	2	153	28	8	22	40	1.82
3852503--3852836	81	4.1	81	87	1	456	41	9	21	27	1.84
3852503--3852836	27	12.4	27	85	1	402	41	9	21	27	1.84
3855935--3856034	39	2.6	38	79	4	103	31	29	23	17	1.96
3861195--3861268	37	2.0	37	100	0	148	54	13	5	27	1.61
3861266--3861308	19	2.3	18	80	4	50	34	13	0	51	1.42
3861845--3861869	11	2.3	11	100	0	50	56	0	0	44	0.99
3865008--3865138	42	3.1	42	80	4	158	26	16	25	31	1.96
3865063--3865171	42	2.6	42	82	7	123	29	14	25	30	1.95
3867089--3867288	69	2.9	69	80	4	215	34	20	18	28	1.95
3869108--3869147	10	3.4	13	77	22	52	50	15	0	35	1.44
3869107--3869152	23	2.0	23	91	8	76	50	15	0	34	1.44
3869110--3869159	23	2.2	23	85	7	66	54	12	0	34	1.38
3871981--3872014	10	3.1	11	87	12	52	11	0	0	88	0.52
3876734--3876892	43	3.7	44	81	5	191	30	13	23	32	1.93
3888238--3888319	23	3.5	23	81	9	87	34	21	21	21	1.97
3888259--3888319	22	2.7	23	85	10	90	32	22	24	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3888259--3888328	23	3.1	23	78	12	81	34	22	24	18	1.96
3888236--3888328	45	2.0	47	85	4	127	34	21	22	21	1.97
3890956--3891137	99	1.9	99	83	7	241	24	31	18	25	1.97
3890956--3891229	49	5.8	46	73	16	156	23	31	18	26	1.97
3891055--3891229	92	1.9	93	84	4	237	24	31	17	26	1.97
3895967--3895995	13	2.2	13	100	0	58	51	20	0	27	1.47
3896007--3896033	4	6.8	4	100	0	54	77	0	0	22	0.76
3897001--3897025	12	2.1	12	100	0	50	16	8	16	60	1.58
3897707--3897879	46	3.7	45	74	13	147	28	17	29	24	1.98
3899512--3899875	147	2.5	147	78	6	394	32	16	23	28	1.96
3909297--3909326	12	2.5	12	94	0	51	30	50	16	3	1.62
3916513--3916644	47	2.8	48	83	1	176	34	26	15	23	1.94
3919804--3919843	21	1.9	21	89	0	62	27	25	25	22	2.00
3920590--3920634	22	2.1	23	84	12	60	40	6	8	44	1.62
3921842--3921929	29	3.0	30	76	14	85	54	6	3	35	1.44
3940038--3940108	21	3.4	20	76	3	61	15	33	29	21	1.94
3944392--3944435	16	2.7	16	86	10	54	29	2	0	68	1.02
3944679--3944718	21	1.9	21	85	10	55	32	5	2	60	1.32
3944743--3944793	8	5.7	9	76	17	52	29	3	1	64	1.22
3944743--3944793	17	2.8	17	85	8	57	29	3	1	64	1.22
3947214--3947323	51	2.2	51	86	3	150	30	13	8	48	1.72
3948240--3948278	20	2.1	18	85	9	51	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3948241--3948283	23	2.0	23	81	9	54	53	2	0	44	1.13
3949474--3949534	31	2.0	30	87	6	88	45	6	3	44	1.46
3954945--3954991	21	2.2	22	92	3	78	21	19	38	21	1.94
3958835--3958902	29	2.4	27	81	13	82	48	2	1	47	1.26
3963313--3963419	49	2.2	49	83	6	128	24	15	32	27	1.96
3963358--3963514	80	2.0	80	88	0	233	24	15	33	26	1.95
3964980--3965027	22	2.1	24	88	7	73	45	0	0	54	0.99
3967496--3967542	22	2.2	21	84	3	58	34	10	23	31	1.89
3971510--3971547	19	2.0	19	94	0	67	31	23	10	34	1.89
3983384--3983428	23	2.0	23	86	8	65	37	8	11	42	1.72
3990276--3990349	30	2.5	30	84	0	103	31	20	17	31	1.96
3991801--3991827	11	2.5	11	100	0	54	74	0	25	0	0.83
3992729--3992779	26	2.0	26	84	0	66	41	1	5	50	1.37
3992778--3992818	14	2.9	14	81	3	55	43	0	0	56	0.99
3992848--3992885	8	4.9	8	83	6	51	26	7	0	65	1.19
3992842--3992885	15	2.9	16	80	10	56	27	6	0	65	1.17
3992842--3992918	12	6.1	12	71	16	57	31	6	0	62	1.21
3992945--3993018	32	2.3	33	83	6	89	52	0	5	41	1.24
3992939--3993018	33	2.5	31	81	8	88	51	0	5	43	1.23
3994071--3994118	21	2.2	22	92	3	80	45	0	6	47	1.27
3994083--3994180	46	2.2	46	85	9	130	46	5	5	42	1.47
3995889--3995932	22	2.0	22	81	0	52	38	6	0	54	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3998336--3998382	4	11.8	4	100	0	94	76	0	23	0	0.78
3998336--3998397	8	8.4	7	92	7	65	77	0	22	0	0.77
3999058--3999098	21	2.0	21	90	9	66	68	0	0	31	0.90
4018996--4019055	31	2.0	31	90	3	95	46	5	6	41	1.52
4021820--4021888	21	3.4	21	71	15	72	36	1	7	55	1.37
4021875--4021905	15	2.1	14	94	5	53	35	3	6	54	1.42
4029392--4029460	21	3.4	21	76	15	81	37	0	5	56	1.23
4033037--4033075	16	2.4	16	78	0	51	35	17	15	30	1.91
4039341--4039383	20	2.2	19	87	4	59	48	6	2	41	1.43
4041836--4041885	20	2.4	22	83	9	61	54	6	0	40	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250