genome.fa.s9.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  131  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42470500--42471019	96	5.5	94	95	1	887	29	29	8	32	1.87
42470500--42471019	143	3.7	143	96	1	922	29	29	8	32	1.87
42478573--42478670	34	2.9	33	80	10	110	27	22	22	27	1.99
42481172--42481209	19	2.0	19	85	10	51	28	0	2	68	1.03
42483293--42483700	46	8.9	46	85	4	477	42	14	23	19	1.88
42483301--42483700	89	4.4	89	85	4	453	42	14	23	19	1.88
42483783--42483826	13	3.4	13	77	0	52	38	2	22	36	1.67
42484748--42484822	22	3.0	26	79	15	104	56	4	12	28	1.54
42484870--42484944	24	3.2	24	62	24	59	38	16	26	18	1.91
42484817--42485037	47	4.7	47	90	1	329	41	15	23	19	1.90
42484817--42485037	93	2.4	93	90	1	336	41	15	23	19	1.90
42485120--42485215	26	3.7	24	73	13	66	40	4	19	35	1.71
42485976--42486044	36	1.9	36	96	0	129	23	13	37	26	1.91
42490573--42490651	40	2.0	40	89	0	122	16	16	31	35	1.91
42495884--42496044	39	4.2	39	89	4	193	20	23	27	27	1.99
42495913--42496056	39	3.7	39	94	0	252	22	23	27	27	1.99
42503884--42504027	39	3.7	39	94	0	252	20	22	28	28	1.99
42508435--42508513	25	3.2	25	98	0	149	31	12	27	27	1.93
42509059--42509097	16	2.6	16	92	8	64	46	0	15	38	1.46
42509526--42509565	16	2.5	16	95	0	71	32	25	7	35	1.84
42511309--42511367	28	2.1	28	90	0	91	32	28	6	32	1.83
42516726--42516787	28	2.2	28	91	2	99	32	29	6	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42519152--42519271	57	2.1	57	84	6	154	32	20	11	35	1.88
42522722--42522764	21	2.0	22	81	9	52	79	0	16	4	0.90
42523875--42523956	22	3.9	22	73	10	64	36	1	0	62	1.03
42526491--42526542	27	1.9	27	100	0	104	48	1	19	30	1.60
42527520--42527559	13	3.1	13	100	0	80	45	22	0	32	1.53
42528295--42528319	11	2.3	11	100	0	50	60	0	32	8	1.26
42530685--42530815	67	2.0	67	90	3	210	34	13	12	38	1.84
42530862--42530939	32	2.5	31	87	4	111	29	5	12	52	1.61
42531023--42531087	30	2.2	30	83	5	78	44	4	0	50	1.22
42531012--42531087	20	3.8	19	74	22	66	44	3	0	51	1.20
42531365--42531405	17	2.3	18	87	8	57	31	0	2	65	1.05
42531364--42531406	18	2.2	20	80	12	54	34	0	2	62	1.08
42531439--42531463	9	2.8	9	100	0	50	20	12	0	68	1.21
42532276--42532313	18	2.1	18	85	9	51	50	7	0	42	1.31
42533615--42533642	13	2.2	13	100	0	56	42	7	0	50	1.30
42535166--42535231	33	2.0	34	85	8	91	27	27	21	24	1.99
42535617--42535734	27	4.4	27	86	0	146	23	18	19	38	1.93
42536914--42536955	20	2.0	21	95	4	77	66	4	23	4	1.30
42538264--42538333	16	4.4	16	90	0	113	31	1	35	31	1.67
42538312--42538402	45	2.0	44	85	2	119	30	5	28	35	1.80
42538545--42538582	16	2.4	17	82	13	53	52	2	0	44	1.14
42538528--42538814	22	14.0	21	65	21	92	53	3	1	41	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42538628--42538668	13	3.2	12	80	12	55	58	0	0	41	0.98
42538656--42538691	18	2.0	18	100	0	72	66	0	0	33	0.92
42538779--42538813	18	2.0	17	94	5	61	57	0	0	42	0.99
42538583--42538874	59	4.8	60	69	15	192	52	4	1	41	1.33
42538583--42538890	121	2.6	120	94	1	528	52	4	1	40	1.32
42540374--42540403	13	2.3	13	94	0	51	30	13	6	50	1.67
42549726--42549756	15	2.1	15	93	0	53	90	0	9	0	0.46
42549723--42549754	11	3.0	11	95	4	57	93	0	6	0	0.34
42550239--42550273	18	2.0	18	88	5	54	60	2	0	37	1.12
42550228--42550313	44	2.0	43	83	2	109	52	3	9	34	1.51
42551570--42551628	27	2.2	27	87	3	84	52	3	13	30	1.57
42551787--42551868	27	3.3	23	73	20	69	58	3	8	29	1.45
42552151--42552188	17	2.2	17	90	0	58	63	5	0	31	1.17
42552167--42552220	21	2.5	20	80	11	54	61	0	1	37	1.07
42553876--42553971	44	2.2	45	81	7	115	29	19	20	30	1.97
42554329--42554466	44	3.1	44	68	10	109	28	21	16	33	1.95
42557855--42558037	47	3.9	47	75	13	173	25	19	26	28	1.99
42565135--42565311	47	3.8	47	77	13	186	22	20	28	28	1.98
42572693--42572736	19	2.2	20	88	4	63	47	4	18	29	1.68
42576549--42576607	27	2.2	27	87	3	84	52	3	13	30	1.57
42576761--42576845	27	3.4	25	71	17	70	57	3	9	29	1.47
42577129--42577166	17	2.2	17	90	0	58	63	5	0	31	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42577145--42577196	22	2.4	22	80	3	61	63	0	1	34	1.06
42581461--42581568	26	4.2	26	93	0	189	32	7	24	36	1.83
42588524--42588609	26	3.3	26	96	3	165	30	6	26	36	1.83
42588592--42588621	15	2.0	15	100	0	60	26	13	26	33	1.93
42592946--42592993	21	2.3	20	75	10	53	29	6	12	52	1.63
42597461--42597900	3	145.7	3	67	22	91	31	4	4	59	1.37
42597676--42597728	25	2.1	25	86	13	74	33	0	7	58	1.26
42597520--42597842	151	2.1	153	86	5	449	32	3	4	58	1.37
42598100--42598195	3	32.3	3	75	8	81	28	7	0	64	1.20
42598277--42598310	12	2.8	12	90	0	50	44	8	2	44	1.50
42602857--42602899	16	2.5	19	75	25	58	20	4	2	72	1.14
42602845--42602910	29	2.3	29	82	12	82	22	6	1	69	1.19
42606351--42606394	21	2.1	21	95	0	79	20	29	15	34	1.94
42617247--42617493	77	3.2	76	84	4	309	28	15	19	36	1.93
42617247--42617493	76	3.2	75	83	5	307	28	15	19	36	1.93
42619384--42619472	3	29.7	3	74	17	62	31	3	2	62	1.23
42619436--42619747	142	2.3	135	80	10	339	31	4	5	58	1.41
42619458--42619731	143	1.9	142	84	7	363	31	4	6	58	1.41
42619767--42619793	3	9.0	3	100	0	54	33	0	0	66	0.92
42619953--42620001	22	2.3	22	82	3	64	22	10	8	59	1.56
42619993--42620156	3	55.0	3	70	8	93	30	8	1	59	1.35
42619971--42620083	12	10.1	12	70	20	93	27	8	1	61	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42619993--42620083	21	4.3	21	85	4	103	28	7	0	63	1.22
42620168--42620203	11	3.2	11	88	7	54	44	8	2	44	1.48
42624025--42624083	31	1.9	30	82	3	73	45	1	22	30	1.62
42624750--42624792	16	2.5	19	75	25	58	20	4	2	72	1.14
42624738--42624803	29	2.3	29	82	12	82	22	6	1	69	1.19
42626655--42626683	14	2.0	15	93	6	51	27	0	20	51	1.47
42627848--42627948	43	2.3	43	77	12	116	24	18	25	30	1.98
42627845--42627968	43	2.9	41	76	11	115	25	19	25	29	1.99
42634506--42635193	343	2.0	343	98	0	1340	34	18	17	30	1.94
42641890--42642289	138	2.9	138	78	5	432	30	18	20	30	1.96
42642080--42642166	44	2.0	44	84	4	113	32	16	20	31	1.94
42642123--42642428	94	3.3	94	89	0	450	30	19	18	32	1.96
42642251--42642394	44	3.1	44	66	21	114	31	18	19	30	1.96
42644604--42644668	21	3.2	21	70	12	73	12	26	23	38	1.90
42644586--42644670	39	2.2	39	95	0	152	12	27	24	35	1.92
42644586--42644681	39	2.5	39	91	0	129	13	26	25	35	1.93
42645720--42645757	19	2.0	20	90	10	62	65	28	0	5	1.14
42647211--42647250	15	3.0	13	86	13	55	25	7	0	67	1.16
42647227--42647269	16	2.5	19	75	25	58	20	4	2	72	1.14
42647215--42647280	29	2.3	29	82	12	82	22	6	1	69	1.19
42653898--42653924	13	2.1	13	100	0	54	70	0	22	7	1.12
42657439--42657955	132	3.9	132	83	5	609	35	18	18	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42657484--42657961	263	1.8	264	85	3	676	35	19	18	26	1.95
42661483--42661581	30	3.3	30	91	0	153	24	49	7	19	1.73
42662029--42662154	25	5.2	25	71	14	95	35	5	3	55	1.39
42662182--42662244	25	2.5	24	84	7	72	30	4	6	58	1.43
42662110--42662280	77	2.2	73	76	16	164	30	7	4	57	1.46
42662306--42662361	25	2.3	24	79	14	62	37	16	3	42	1.65
42673361--42673396	12	3.1	12	88	4	56	80	0	19	0	0.71
42673361--42673394	17	2.1	16	88	5	50	82	0	17	0	0.67
42674252--42674696	100	4.8	90	76	15	284	26	17	19	37	1.93
42674400--42674444	13	3.4	13	84	6	63	15	8	6	68	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250