genome.fa.s9.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  149  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48318270--48318315	15	2.9	15	90	6	65	67	0	6	26	1.15
48318308--48318341	14	2.4	14	90	9	52	67	0	5	26	1.13
48318280--48318344	29	2.2	30	79	17	75	64	0	7	27	1.20
48318354--48318401	18	2.7	18	78	18	55	66	6	6	20	1.36
48318923--48318949	5	5.4	5	100	0	54	81	0	0	18	0.69
48319384--48319739	88	4.1	87	81	7	368	21	23	20	35	1.96
48319730--48320230	45	11.2	45	70	9	290	30	22	18	28	1.97
48319730--48320230	90	5.6	90	70	11	348	30	22	18	28	1.97
48319730--48320298	179	3.2	179	90	0	877	30	22	18	28	1.97
48320133--48320474	133	2.6	133	79	7	388	28	21	19	29	1.98
48320267--48321021	178	4.3	177	88	1	1064	29	21	18	30	1.97
48320576--48320672	45	2.2	44	85	7	124	28	21	17	31	1.96
48320267--48321010	354	2.1	355	88	1	1096	29	21	18	30	1.97
48320884--48321149	134	2.0	134	89	1	408	30	22	19	27	1.98
48321066--48321188	45	2.8	44	82	8	142	30	23	21	25	1.99
48320935--48321276	179	1.9	179	85	3	474	30	22	19	27	1.98
48321114--48321208	45	2.1	45	86	3	129	27	26	20	26	1.99
48320977--48321320	89	3.9	89	69	12	215	29	22	19	28	1.98
48321116--48321488	133	2.8	133	79	9	391	28	23	18	30	1.97
48321245--48321989	178	4.2	178	88	1	1062	28	22	17	31	1.97
48321556--48321652	45	2.2	44	84	3	115	28	21	15	34	1.94
48321864--48322122	133	1.9	133	86	1	367	30	22	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48321245--48322164	356	2.6	354	82	4	883	29	21	18	30	1.97
48322045--48322167	45	2.7	45	83	6	142	30	23	19	26	1.98
48322224--48323011	178	4.4	178	89	0	1150	29	22	17	30	1.97
48322090--48322431	133	2.6	134	80	9	419	28	22	19	29	1.98
48321782--48322622	445	1.9	443	80	5	980	29	21	18	30	1.97
48322843--48323102	134	1.9	134	89	1	405	31	21	19	28	1.97
48323034--48323144	45	2.5	45	83	5	127	32	19	19	27	1.97
48322891--48323233	179	1.9	179	88	4	523	31	20	18	28	1.97
48323070--48323499	133	3.2	132	86	4	553	30	21	18	30	1.97
48319953--48323366	979	3.5	978	93	0	5728	29	21	18	30	1.97
48323470--48323566	45	2.2	43	89	10	142	27	21	17	32	1.96
48323337--48323915	178	3.3	178	88	0	854	29	21	17	31	1.96
48322402--48324170	935	1.9	935	93	0	3043	29	21	18	30	1.97
48322580--48323989	757	1.9	755	84	4	1890	29	21	18	30	1.97
48323781--48324043	134	2.0	134	90	1	411	30	22	19	28	1.98
48323880--48324231	179	2.0	178	90	3	555	29	20	19	30	1.97
48323962--48324102	45	3.1	44	76	11	142	29	24	17	29	1.97
48323879--48324168	89	3.2	88	70	14	243	30	21	20	28	1.98
48330169--48330468	126	2.4	126	81	4	331	38	21	14	25	1.91
48330831--48330876	15	2.9	15	87	6	56	67	2	6	23	1.25
48330846--48330948	14	7.2	13	72	23	59	65	1	7	25	1.30
48330843--48330905	29	2.2	30	78	18	71	65	0	7	26	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48332031--48332056	3	8.7	3	100	0	52	65	0	34	0	0.93
48339569--48339685	35	3.3	36	89	4	175	36	11	13	37	1.82
48339561--48339685	18	6.9	18	86	5	173	36	11	14	37	1.82
48339561--48339685	53	2.3	54	91	2	216	36	11	14	37	1.82
48351166--48351211	19	2.4	19	85	7	58	43	15	21	19	1.87
48352700--48352999	126	2.4	126	82	4	349	37	21	15	26	1.92
48353302--48353368	21	3.0	23	76	21	72	64	0	5	29	1.17
48353335--48353380	15	2.9	15	90	6	65	67	0	6	26	1.15
48354225--48354272	23	2.1	22	81	11	53	35	6	2	56	1.36
48354546--48354575	3	10.0	3	100	0	60	33	0	33	33	1.58
48356887--48356919	2	16.5	2	100	0	66	0	0	48	51	1.00
48362079--48362195	35	3.3	36	91	4	184	37	11	12	37	1.81
48362071--48362195	18	6.9	18	88	5	182	36	11	14	37	1.82
48362071--48362195	53	2.3	54	94	2	216	36	11	14	37	1.82
48368614--48368650	17	2.2	17	95	0	65	89	0	8	2	0.58
48369566--48369747	44	4.1	44	73	8	163	31	15	24	28	1.96
48369822--48369900	34	2.3	34	95	0	140	32	20	17	29	1.95
48369822--48369914	34	2.7	33	86	6	116	32	21	17	29	1.96
48370139--48370850	83	8.6	83	90	0	1111	33	18	20	27	1.96
48370752--48371151	218	1.8	218	91	2	660	33	17	21	28	1.96
48371548--48371767	18	12.4	19	84	12	209	38	12	12	36	1.81
48371556--48371769	35	6.0	36	91	3	301	38	11	13	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48371556--48371769	53	4.0	53	90	4	306	38	11	13	36	1.81
48371556--48371769	88	2.4	89	93	2	376	38	11	13	36	1.81
48376166--48376215	24	2.1	24	96	0	91	32	10	8	50	1.65
48377486--48377520	13	2.8	12	86	4	52	2	34	0	62	1.10
48378390--48378518	38	3.4	37	75	6	105	32	17	14	34	1.91
48378598--48378768	91	1.9	91	87	2	254	29	25	13	31	1.94
48378984--48379021	18	2.1	18	85	9	51	21	5	13	60	1.52
48380720--48380744	12	2.1	12	100	0	50	48	0	0	52	1.00
48383631--48383692	32	1.9	32	96	0	115	19	24	24	32	1.98
48386098--48386145	20	2.3	20	75	3	51	31	12	6	50	1.65
48387075--48387167	39	2.4	38	82	5	98	35	19	13	31	1.91
48387246--48387460	91	2.4	91	82	6	267	32	25	13	28	1.94
48390445--48390578	27	5.0	26	78	7	126	39	20	18	21	1.92
48390442--48390563	54	2.3	54	82	2	147	37	22	18	20	1.94
48390727--48390795	36	1.9	36	100	0	138	26	28	27	17	1.97
48398343--48398376	16	2.2	16	89	5	52	55	20	2	20	1.56
48401028--48401161	26	5.2	26	95	0	223	33	7	23	35	1.83
48407786--48407888	26	4.2	26	81	12	144	33	7	23	35	1.83
48407799--48407888	47	1.9	47	95	0	162	33	8	22	35	1.85
48407825--48407867	21	2.0	21	95	0	77	34	9	23	32	1.87
48411462--48411839	47	7.9	47	92	3	605	32	8	30	29	1.87
48411462--48411839	96	4.0	96	94	1	645	32	8	30	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48411958--48412036	37	2.1	37	88	4	115	25	18	30	25	1.98
48423162--48423290	46	2.8	46	91	2	197	29	27	21	20	1.98
48431990--48432099	26	4.2	26	94	2	177	33	4	24	37	1.76
48435132--48435230	29	3.0	34	76	22	120	23	15	21	40	1.90
48436446--48436501	23	2.6	22	83	10	64	35	8	16	39	1.80
48442122--48442167	10	4.5	10	81	5	56	82	0	17	0	0.67
48442122--48442174	23	2.2	24	83	3	72	83	0	16	0	0.66
48442134--48442173	6	6.8	6	83	16	57	85	0	15	0	0.61
48442132--48442174	18	2.4	17	88	11	68	83	0	16	0	0.64
48443124--48443355	43	5.5	43	66	21	159	30	21	21	27	1.98
48443175--48443396	41	5.3	41	63	19	127	30	22	22	24	1.99
48443125--48443650	84	6.3	84	87	4	751	30	22	21	25	1.99
48443792--48444113	134	2.4	133	86	3	441	31	19	23	25	1.98
48443792--48444069	44	6.2	44	69	9	188	30	18	23	26	1.98
48443926--48444337	220	1.9	220	82	4	515	31	19	22	26	1.98
48444085--48444246	89	1.8	87	82	10	204	30	19	23	27	1.98
48444279--48444716	78	5.6	78	89	2	625	33	17	23	24	1.96
48444669--48444837	45	3.8	45	87	3	234	29	15	28	26	1.96
48444669--48444836	89	1.9	89	88	2	257	29	14	29	26	1.95
48445197--48445288	19	4.9	19	93	5	161	38	11	15	34	1.84
48445197--48445295	36	2.7	38	89	9	161	38	11	16	34	1.84
48445197--48445311	19	5.8	22	88	8	96	37	10	15	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48446713--48446738	12	2.2	12	100	0	52	38	0	15	46	1.46
48447153--48447184	5	6.4	5	100	0	64	40	18	0	40	1.51
48447261--48447300	20	2.1	19	95	4	71	60	5	12	22	1.52
48449907--48449970	32	2.0	32	100	0	128	34	9	9	46	1.68
48454405--48454454	21	2.4	21	93	0	82	32	36	8	24	1.84
48456094--48456157	21	3.0	22	70	9	60	37	23	18	20	1.94
48456638--48456672	18	2.0	18	88	5	54	25	25	0	48	1.51
48457397--48457467	9	8.6	9	83	16	84	59	1	0	39	1.06
48457397--48457469	3	24.3	3	75	10	69	60	1	0	38	1.06
48457397--48457472	18	4.6	17	80	19	99	60	1	0	38	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250