Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  173  of  250  ( 29906 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55343539--55343575
16
2.2
17
90
4
58
62
0
0
37
0.96
55345577--55345640
29
2.1
31
83
11
80
35
0
3
60
1.12
55345618--55345642
8
3.1
8
100
0
50
24
0
0
76
0.80
55353540--55353583
19
2.4
18
85
7
54
40
9
0
50
1.34
55355335--55355433
28
3.4
27
70
20
74
25
28
20
26
1.99
55355335--55355469
60
2.2
59
82
8
148
25
25
20
28
1.99
55355806--55355871
26
2.5
26
73
9
62
28
13
24
33
1.93
55361275--55361338
28
2.3
28
97
0
119
32
17
6
43
1.74
55361278--55361346
28
2.5
28
90
4
95
31
17
7
43
1.76
55361360--55361406
18
2.6
18
79
0
58
38
23
10
27
1.88
55362777--55362823
19
2.5
18
86
6
67
8
14
4
72
1.24
55362837--55362877
21
2.0
21
85
0
55
51
2
0
46
1.14
55362833--55362878
13
3.5
13
80
19
51
54
2
0
43
1.12
55362953--55363000
25
1.9
25
83
8
62
54
2
0
43
1.12
55362963--55363003
20
2.0
22
90
9
68
51
0
0
48
1.00
55363140--55363192
20
2.6
21
74
17
65
45
20
0
33
1.52
55363510--55363541
16
2.0
16
100
0
64
62
12
6
18
1.50
55365075--55365103
14
2.1
14
100
0
58
37
6
20
34
1.80
55368133--55368163
15
2.1
14
94
5
53
54
6
3
35
1.42
55368150--55368218
21
3.4
20
71
16
70
55
7
1
36
1.37
55373227--55373283
20
3.3
16
79
18
53
54
0
1
43
1.10
55373244--55373292
20
2.5
20
86
0
71
51
0
4
44
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55375143--55375185
18
2.5
17
81
7
50
37
9
11
41
1.74
55375148--55375185
18
2.1
18
90
0
58
34
7
13
44
1.72
55404539--55404564
3
8.7
3
100
0
52
30
0
0
69
0.89
55404569--55404751
74
2.5
74
98
0
350
27
6
24
41
1.79
55408981--55409163
74
2.5
74
98
0
350
27
6
24
41
1.79
55428051--55428161
48
2.3
47
81
4
116
32
27
18
21
1.97
55429970--55430027
26
2.2
26
93
0
98
34
5
24
36
1.78
55451025--55451081
28
2.0
28
96
0
105
49
17
19
14
1.80
55459160--55459199
19
2.1
19
86
9
55
60
5
0
35
1.19
55473427--55473467
21
2.0
21
95
0
73
43
19
7
29
1.78
55474846--55475039
18
10.8
18
84
0
217
34
15
11
38
1.84
55474850--55475039
54
3.5
54
91
0
299
34
15
11
38
1.83
55475432--55475466
17
2.0
18
88
5
54
37
11
2
48
1.54
55476287--55476328
8
5.0
8
81
18
50
0
33
0
66
0.92
55476291--55476327
19
1.9
19
100
0
74
0
32
0
67
0.91
55478819--55478843
13
1.9
13
100
0
50
44
8
16
32
1.76
55478321--55479114
392
2.0
391
94
1
1387
33
18
22
25
1.97
55481340--55481380
20
2.0
21
90
4
66
29
7
17
46
1.74
55497265--55497291
12
2.2
12
100
0
54
25
7
11
55
1.61
55497719--55497743
13
1.9
13
100
0
50
24
8
28
40
1.83
55497685--55497746
26
2.4
26
76
10
72
33
4
22
38
1.76
55499321--55499375
24
2.4
23
81
6
67
54
7
1
36
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55499408--55499452
21
2.3
18
85
11
54
51
6
0
42
1.28
55499964--55500028
3
22.0
3
81
9
80
66
3
1
29
1.16
55501796--55501895
44
2.2
44
82
5
112
30
26
19
25
1.98
55502140--55502170
14
2.2
14
94
0
53
67
3
6
22
1.28
55502189--55502339
82
1.8
82
83
5
198
40
15
15
29
1.87
55502000--55502400
87
4.6
88
75
10
405
36
18
16
28
1.93
55505937--55505967
11
2.7
12
90
10
55
25
0
0
74
0.82
55508109--55508428
46
7.0
46
87
3
421
41
15
23
20
1.89
55519213--55519264
16
3.3
15
76
10
50
51
0
0
48
1.00
55530550--55530626
38
2.0
37
81
18
88
53
1
1
44
1.17
55532279--55532311
12
2.8
12
95
4
59
36
0
0
63
0.95
55532435--55532497
30
2.1
30
96
0
117
57
12
3
26
1.51
55532535--55532584
22
2.3
22
82
6
57
60
8
14
18
1.58
55533136--55533171
15
2.5
14
91
8
63
66
0
0
33
0.92
55533326--55533359
6
5.7
6
92
0
59
47
35
2
14
1.60
55535576--55535610
17
1.9
19
88
11
56
22
8
2
65
1.34
55538080--55538133
22
2.5
20
79
8
63
64
0
1
33
1.04
55538075--55538131
20
2.8
20
75
17
55
59
0
3
36
1.14
55544934--55544971
18
2.1
19
90
5
60
42
5
7
44
1.56
55545151--55545236
20
4.2
20
73
16
59
40
0
4
54
1.21
55544904--55545674
240
3.2
238
79
9
745
38
9
7
45
1.64
55545407--55545444
16
2.4
17
82
13
53
44
5
7
42
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55545209--55545673
242
1.9
248
83
5
604
37
11
6
44
1.68
55545657--55545733
30
2.8
26
82
11
82
36
0
9
54
1.32
55545655--55545733
27
2.8
29
78
16
85
36
0
8
54
1.32
55545822--55545871
25
2.1
25
81
7
59
42
0
2
56
1.11
55550892--55550937
15
2.9
16
83
9
58
67
6
21
4
1.32
55552747--55552923
18
9.7
18
73
10
135
33
13
15
37
1.86
55552735--55552844
54
2.0
54
84
3
141
37
12
14
35
1.84
55552942--55552992
22
2.3
22
82
0
57
41
7
15
35
1.76
55554893--55554989
28
3.4
28
75
10
97
19
14
11
54
1.70
55554982--55555140
27
5.7
26
78
13
140
25
18
5
50
1.69
55554976--55555141
55
2.9
55
81
7
176
24
19
5
50
1.68
55554926--55555135
28
7.5
26
76
12
109
22
18
6
52
1.67
55554921--55555136
84
2.6
83
82
5
238
22
17
6
52
1.68
55555039--55555151
56
2.0
56
83
6
140
27
16
5
50
1.67
55555653--55555690
20
1.9
20
88
0
58
63
0
0
36
0.95
55555655--55555698
20
2.2
20
83
0
52
68
0
0
31
0.90
55557635--55557676
22
1.9
22
85
0
57
61
0
2
35
1.09
55562992--55563055
27
2.4
27
79
12
69
53
3
1
42
1.26
55568041--55568129
44
2.0
43
85
12
117
37
4
21
37
1.74
55568236--55568299
16
3.5
18
75
21
62
53
4
0
42
1.22
55569638--55569763
63
2.0
63
93
0
216
35
13
16
34
1.88
55571992--55572042
23
2.3
22
83
6
59
45
15
5
33
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55575222--55575283
24
2.7
24
80
11
67
6
16
3
74
1.16
55581064--55581196
41
3.2
41
80
7
117
42
15
20
21
1.88
55581574--55581626
21
2.5
21
84
0
61
26
3
22
47
1.68
55581581--55581626
21
2.2
21
88
0
65
26
4
23
45
1.71
55583031--55583077
23
2.0
24
84
12
62
21
25
0
53
1.46
55584529--55584715
9
20.9
9
73
6
121
44
18
1
35
1.60
55584532--55584661
36
3.6
36
75
9
140
45
20
1
32
1.61
55586404--55586439
12
3.0
12
95
0
63
38
8
19
33
1.82
55587170--55587208
21
1.9
20
89
5
60
58
7
5
28
1.47
55587367--55587438
14
5.7
12
72
18
65
62
2
1
33
1.18
55587345--55587446
37
2.7
37
88
7
136
57
3
3
34
1.35
55587579--55587751
3
57.0
3
65
15
54
56
3
6
32
1.43
55587603--55587631
5
5.8
5
100
0
58
62
0
0
37
0.96
55587716--55587760
21
2.1
21
83
0
54
57
2
2
37
1.23
55588634--55588674
21
1.9
22
85
5
57
24
2
36
36
1.69
55592775--55592944
43
4.0
43
85
0
205
26
17
25
30
1.97
55593771--55593820
22
2.2
22
82
13
57
8
18
0
74
1.06
55593779--55593820
22
1.9
22
85
9
59
9
16
0
73
1.08
55594542--55594599
30
2.0
30
93
3
100
46
6
0
46
1.29
55598342--55598382
18
2.4
18
88
8
59
26
0
2
70
0.99
55599552--55599595
18
2.4
18
85
7
54
52
2
2
43
1.26
55600761--55600921
47
3.4
47
75
3
162
33
16
22
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55613187--55613239
24
2.1
26
82
6
65
50
7
7
33
1.59
55613814--55613861
24
2.0
24
84
8
62
68
4
2
25
1.18
55614339--55614410
13
5.5
13
73
6
65
54
4
4
37
1.39
55614338--55614411
26
2.9
25
80
11
78
55
4
4
36
1.38
55614991--55615024
11
3.1
11
95
0
59
50
0
50
0
1.00
55615432--55615540
26
4.2
26
93
0
191
33
7
23
35
1.83
55617325--55617885
137
4.1
137
97
0
1041
24
18
24
31
1.97
55619823--55619869
18
2.6
18
76
6
51
40
19
12
27
1.88
55633466--55633535
21
3.2
21
68
7
59
31
15
7
45
1.73
55633799--55633850
19
2.5
20
82
14
61
36
0
1
61
1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250