genome.fa.s9.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  112  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35958405--35958483	37	2.1	37	83	4	97	26	17	29	26	1.98
35959845--35960085	27	8.9	27	89	0	338	24	22	19	33	1.97
35959846--35960147	81	3.7	81	83	2	223	26	19	18	35	1.95
35960078--35960256	27	6.6	27	83	2	216	31	7	19	40	1.80
35960078--35960256	54	3.3	54	89	0	277	31	7	19	40	1.80
35963464--35963515	5	10.4	5	76	15	54	34	5	23	36	1.79
35963466--35963523	11	5.6	11	74	15	61	36	8	20	34	1.84
35963470--35963523	20	2.7	20	91	0	90	35	9	22	33	1.86
35966373--35966480	51	2.1	51	87	5	155	41	7	22	28	1.80
35984043--35984080	15	2.4	16	91	8	60	47	21	2	28	1.64
35984759--35984909	42	3.5	43	74	8	128	34	24	17	23	1.96
35992124--35992274	44	3.5	44	77	10	134	32	25	17	24	1.97
35992111--35992275	86	1.9	85	82	10	203	32	25	17	24	1.97
35992644--35992668	8	3.1	8	100	0	50	24	24	0	52	1.48
36000858--36000932	23	3.2	23	62	23	57	29	10	32	28	1.90
36000833--36001240	47	8.6	47	92	2	645	30	12	30	26	1.93
36000807--36001240	145	3.0	145	93	2	716	30	12	30	26	1.93
36000832--36001286	145	3.2	141	87	5	591	30	12	30	25	1.92
36001214--36001350	46	3.0	46	89	0	202	34	8	31	25	1.86
36001533--36001643	37	3.0	37	91	0	177	23	19	29	27	1.98
36002583--36002693	27	4.1	27	86	10	147	35	21	23	19	1.96
36009171--36009359	80	2.3	80	83	4	238	32	10	18	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36009171--36009354	27	6.9	27	88	6	216	33	10	16	39	1.84
36015148--36015195	17	2.8	17	75	9	53	16	2	10	70	1.24
36016808--36016858	25	2.0	25	100	0	102	23	23	9	43	1.83
36021008--36021032	7	3.6	7	100	0	50	32	0	40	28	1.57
36030177--36030339	39	4.2	39	91	0	245	22	21	29	26	1.99
36030177--36030373	78	2.5	78	86	3	227	23	21	28	26	1.99
36032901--36032962	30	2.1	30	93	0	106	38	16	6	38	1.74
36033176--36033355	90	2.0	91	97	1	344	41	16	17	24	1.89
36037539--36037713	56	3.1	56	97	0	325	45	8	23	22	1.80
36038846--36039070	40	5.7	40	86	5	296	24	22	28	25	2.00
36038846--36039103	119	2.2	119	81	6	292	25	21	27	25	1.99
36045513--36045591	39	2.0	40	95	5	142	32	10	27	29	1.89
36045553--36045671	55	2.1	56	98	1	231	44	9	23	22	1.81
36046799--36047023	40	5.7	40	85	5	278	24	21	27	25	1.99
36046854--36047056	80	2.6	79	85	4	250	26	20	27	25	1.99
36046799--36047056	119	2.2	119	80	6	274	25	21	27	25	1.99
36049455--36049551	40	2.5	38	77	6	113	39	32	10	17	1.84
36053027--36053086	16	3.7	16	78	12	68	28	0	3	68	1.05
36063464--36063514	24	2.1	24	82	7	59	25	0	17	56	1.41
36063878--36063984	49	2.3	46	85	4	133	32	13	13	41	1.82
36068887--36069077	57	3.4	57	83	2	240	32	14	25	26	1.95
36068926--36069079	29	5.4	29	67	14	104	31	16	24	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36068953--36069047	28	3.4	28	70	13	86	30	16	23	29	1.96
36076642--36076695	27	2.0	28	81	3	65	61	3	5	29	1.36
36080161--36080460	146	2.0	151	91	5	493	44	15	14	26	1.84
36081326--36081380	28	2.0	26	86	6	74	23	9	0	67	1.19
36081472--36081514	15	2.8	15	92	3	68	23	0	2	74	0.93
36081472--36081538	8	8.0	8	81	15	73	28	0	4	67	1.10
36081688--36081755	28	2.4	28	80	7	75	20	2	27	48	1.64
36081777--36081816	21	1.9	21	84	0	53	20	0	37	42	1.52
36081815--36081909	21	4.4	22	72	16	83	23	1	29	46	1.59
36081871--36081995	66	1.9	66	93	0	214	25	2	28	44	1.67
36081881--36082009	66	1.9	66	85	3	159	27	2	28	41	1.68
36081979--36082024	23	2.0	24	83	8	60	28	0	34	36	1.58
36082657--36082951	41	7.2	40	83	5	351	23	24	20	32	1.98
36082657--36082982	81	4.0	82	85	3	383	25	23	19	31	1.98
36082657--36082951	164	1.8	162	85	1	419	23	24	20	32	1.98
36082657--36082982	40	8.0	39	81	9	268	25	23	19	31	1.98
36084718--36084761	22	2.0	22	82	8	54	38	13	18	29	1.89
36084988--36085209	40	5.6	40	91	1	349	27	26	22	22	1.99
36091364--36091405	22	1.9	22	85	0	57	69	14	4	11	1.34
36094283--36094343	30	2.0	30	87	0	86	29	24	8	37	1.84
36098647--36098752	43	2.5	42	84	4	133	17	20	33	28	1.96
36098679--36098763	43	2.0	43	88	0	125	21	21	31	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36102148--36102216	28	2.5	28	74	6	70	26	8	17	47	1.76
36104542--36104717	39	4.4	39	87	2	219	25	21	28	25	1.99
36104496--36104719	40	5.7	40	84	5	251	24	21	28	25	1.99
36104564--36104742	79	2.3	78	82	6	202	25	20	28	25	1.99
36109495--36109561	27	2.5	27	76	7	66	28	8	17	44	1.79
36112239--36112273	17	2.0	17	88	5	52	14	25	40	20	1.90
36116051--36116167	59	2.0	59	89	3	182	32	32	17	17	1.93
36117452--36117488	13	2.8	13	83	0	56	37	16	5	40	1.71
36120604--36120655	24	2.2	24	83	13	63	50	25	3	21	1.65
36121716--36122086	126	2.9	125	93	1	616	38	15	17	28	1.90
36122296--36122346	21	2.4	21	83	0	57	54	5	11	27	1.59
36122543--36122573	14	2.2	14	94	0	53	67	0	0	32	0.91
36122545--36122581	19	2.0	18	94	5	65	67	0	0	32	0.91
36122972--36123044	18	4.0	18	71	16	69	16	0	56	27	1.41
36122990--36123089	29	3.2	29	80	13	85	17	1	51	31	1.52
36122986--36123060	37	2.0	37	97	0	141	17	0	53	29	1.44
36123335--36123715	85	4.5	85	93	1	629	18	27	25	29	1.98
36123686--36123886	87	2.3	87	86	0	267	23	16	20	38	1.92
36123736--36124010	44	6.3	44	71	12	160	25	17	20	37	1.94
36131724--36131764	21	2.0	21	85	0	55	14	24	19	41	1.89
36135265--36135633	126	2.9	125	94	1	639	37	15	17	28	1.91
36135764--36135803	21	1.9	21	89	0	62	67	2	5	25	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36135844--36135894	21	2.4	21	83	0	57	56	7	9	25	1.58
36136088--36136118	14	2.2	14	94	0	53	67	0	0	32	0.91
36136090--36136126	19	2.0	18	94	5	65	67	0	0	32	0.91
36136108--36136240	58	2.3	58	82	11	159	63	5	4	26	1.34
36136510--36136547	18	2.2	18	90	4	60	23	0	50	26	1.50
36136531--36136602	37	1.9	37	100	0	144	16	0	54	29	1.43
36136569--36136631	29	2.2	29	88	5	92	15	1	50	31	1.54
36137680--36137732	23	2.3	23	96	0	97	45	13	7	33	1.71
36139689--36139790	40	2.5	40	81	7	109	34	14	22	28	1.94
36147242--36147375	51	2.6	52	86	6	193	27	28	15	28	1.96
36148577--36148641	22	3.0	21	77	8	69	24	9	21	44	1.81
36148578--36148662	43	2.0	41	86	8	118	22	10	23	43	1.84
36148943--36148999	28	2.0	28	100	0	114	33	10	31	24	1.89
36151050--36151168	41	2.9	39	80	10	107	29	37	17	15	1.90
36153720--36153771	25	2.1	25	100	0	104	48	13	3	34	1.61
36158523--36158702	48	3.9	48	77	10	210	25	20	26	27	1.99
36158523--36158694	91	1.9	90	87	1	254	26	19	26	27	1.99
36159916--36160643	367	2.0	364	84	3	960	25	20	23	30	1.98
36171628--36171661	10	3.5	10	88	4	52	17	8	0	73	1.08
36176959--36177316	179	2.0	180	83	3	454	31	20	8	39	1.83
36177873--36178313	50	8.7	50	78	5	397	29	26	17	25	1.98
36177873--36178313	101	4.4	100	77	7	324	29	26	17	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36177876--36178313	151	2.9	151	89	2	655	30	26	18	25	1.98
36181643--36181702	29	2.1	29	100	0	102	20	28	28	23	1.99
36181817--36181882	27	2.5	26	78	7	69	34	24	16	24	1.95
36181833--36181894	27	2.3	27	85	0	79	35	20	19	24	1.96
36182128--36182170	22	2.0	22	90	0	68	9	27	27	34	1.88
36182314--36182367	28	2.0	28	88	3	83	18	24	22	35	1.96
36182994--36183026	7	4.6	7	96	3	57	39	0	15	45	1.46
36191173--36191208	18	2.1	17	89	5	54	83	2	13	0	0.76
36202939--36203094	42	3.7	42	82	6	172	27	24	17	30	1.97
36213159--36213245	43	2.0	43	100	0	174	22	21	13	41	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250