genome.fa.s9.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  125  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40211799--40211869	28	2.5	28	88	0	106	50	15	8	25	1.72
40219209--40219307	38	2.6	38	81	12	114	40	5	8	46	1.55
40225701--40225761	32	1.9	32	100	0	122	42	8	0	49	1.32
40227329--40227381	20	2.7	20	79	2	63	26	3	3	66	1.26
40235792--40235822	7	4.4	7	95	0	53	25	3	0	70	1.02
40239284--40239333	23	2.2	23	85	3	66	44	0	8	48	1.32
40239314--40239346	13	2.5	13	100	0	66	36	0	15	48	1.45
40246635--40246670	18	1.9	19	88	5	56	52	2	8	36	1.46
40251908--40252003	28	3.6	28	77	11	110	37	14	21	26	1.92
40252030--40252178	51	2.9	51	91	2	237	31	14	25	28	1.94
40253125--40253177	25	2.1	25	100	0	106	35	24	3	35	1.74
40257664--40257892	40	5.8	40	90	3	331	24	23	28	23	1.99
40261872--40262921	528	2.0	531	97	2	1990	29	18	22	28	1.97
40266200--40266389	40	4.8	40	85	5	226	24	24	26	24	2.00
40268707--40269221	48	10.7	47	79	4	408	24	28	19	27	1.98
40268707--40269230	144	3.6	144	85	2	672	24	28	19	27	1.98
40268707--40269231	96	5.4	96	80	4	545	24	28	19	27	1.98
40272362--40272450	28	3.3	27	84	9	112	33	14	25	25	1.94
40272476--40272644	51	3.3	51	90	0	284	33	13	23	30	1.92
40272476--40272673	51	3.9	51	86	4	274	33	14	23	29	1.94
40272476--40272668	102	1.9	102	90	4	309	33	13	23	29	1.93
40275147--40275292	42	3.3	43	78	12	143	33	24	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40275790--40275832	21	2.1	20	86	4	59	46	23	0	30	1.52
40277241--40277275	17	2.1	17	100	0	70	22	22	37	17	1.94
40288526--40288578	27	2.0	27	96	0	97	16	24	30	28	1.97
40288347--40288611	102	2.6	103	89	3	408	20	20	29	29	1.98
40290575--40290676	29	3.6	29	81	6	109	27	28	16	27	1.97
40301371--40301551	80	2.3	79	91	1	292	22	23	28	25	1.99
40301371--40301551	40	4.6	40	86	5	244	22	23	28	25	1.99
40304867--40304947	33	2.5	32	78	11	87	46	9	4	38	1.59
40304928--40304968	18	2.3	18	91	0	64	53	7	0	39	1.29
40305124--40305223	29	3.2	30	77	8	103	46	15	5	34	1.67
40308629--40308853	40	5.7	40	86	5	287	25	22	26	25	2.00
40313808--40313840	16	1.9	18	88	11	52	51	18	12	18	1.76
40314402--40314523	43	2.8	43	95	2	210	26	31	19	22	1.98
40316914--40316941	14	2.0	14	100	0	56	50	21	0	28	1.49
40324934--40324962	14	2.0	15	93	6	51	51	20	0	27	1.47
40325581--40325609	13	2.2	13	100	0	58	41	20	0	37	1.53
40330100--40330129	16	1.9	16	93	6	53	33	6	23	36	1.81
40352471--40352518	22	2.2	22	84	0	60	56	12	4	27	1.54
40354759--40354794	17	2.1	17	100	0	72	27	16	19	36	1.93
40361158--40361187	3	10.3	3	92	7	53	70	0	0	30	0.88
40364811--40364884	35	2.1	34	87	7	105	25	27	21	25	2.00
40389349--40389410	29	2.1	29	87	0	88	16	22	38	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40392884--40393383	47	10.4	49	90	4	758	32	8	30	29	1.86
40392884--40393383	96	5.2	96	91	4	814	32	8	30	29	1.86
40395988--40396028	21	1.9	22	95	5	75	31	21	14	31	1.94
40396602--40396647	22	2.1	22	100	0	92	34	13	23	28	1.92
40400303--40400397	25	3.8	25	81	5	102	36	17	23	22	1.95
40400289--40400386	50	1.9	51	81	2	117	31	18	24	25	1.97
40400383--40400437	24	2.3	25	71	9	60	43	20	16	20	1.88
40400393--40400559	73	2.3	73	76	11	162	37	18	22	22	1.95
40400522--40400571	26	1.9	26	84	8	66	42	18	20	20	1.90
40401016--40401057	21	2.0	21	90	0	66	40	16	0	42	1.48
40401016--40401054	5	7.6	5	82	5	51	41	17	0	41	1.50
40403578--40403606	14	2.1	14	100	0	58	44	0	6	48	1.29
40403646--40403684	20	2.0	20	100	0	78	48	10	25	15	1.76
40404838--40406202	682	2.0	682	93	0	2347	32	27	14	26	1.94
40414650--40414988	50	7.0	50	86	7	439	27	11	22	39	1.88
40414704--40414964	92	2.8	92	87	5	344	27	9	21	40	1.85
40414662--40414925	142	1.9	141	94	0	465	26	10	22	39	1.87
40421051--40421098	10	4.6	10	85	10	51	62	4	0	33	1.14
40421785--40421825	15	2.6	16	88	11	59	0	17	0	82	0.66
40421786--40421825	16	2.6	16	88	4	55	0	15	0	85	0.61
40421786--40421824	10	3.9	10	87	9	53	0	12	0	87	0.55
40424449--40424607	77	2.1	77	87	2	230	19	20	38	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40435536--40435590	19	2.9	19	77	17	62	40	1	1	56	1.21
40437887--40438017	43	3.1	43	91	2	219	31	25	19	23	1.98
40442566--40442765	41	4.9	40	80	3	186	22	23	20	34	1.97
40442607--40442765	81	2.0	80	82	3	194	22	21	19	37	1.95
40442566--40442773	82	2.6	81	78	5	206	21	22	20	35	1.96
40443099--40443218	43	2.8	42	85	9	154	28	28	18	25	1.98
40447171--40447298	67	1.9	67	95	0	229	39	11	6	42	1.67
40450956--40450998	18	2.3	19	88	4	61	55	0	0	44	0.99
40450971--40451022	18	2.8	18	85	8	61	50	0	0	50	1.00
40451050--40451105	22	2.7	21	86	8	71	50	10	0	39	1.37
40451050--40451106	21	2.8	20	84	10	71	50	10	0	38	1.37
40454320--40454344	3	8.3	3	100	0	50	36	0	0	64	0.94
40456873--40456936	18	3.6	18	100	0	128	9	37	35	17	1.82
40460161--40460215	22	2.5	22	76	2	58	45	3	10	40	1.57
40461629--40461675	15	3.2	15	87	3	60	63	0	0	36	0.94
40461664--40461728	28	2.3	27	77	12	69	55	3	4	36	1.36
40462379--40462453	17	4.2	17	71	11	53	25	0	5	69	1.09
40462397--40462442	24	1.9	24	86	8	67	28	0	2	69	1.00
40465159--40465204	23	2.0	23	84	12	60	45	10	6	36	1.65
40465166--40465210	23	2.0	23	82	8	56	40	13	8	37	1.76
40470041--40470090	25	2.0	24	92	3	82	42	4	0	54	1.19
40470057--40470098	20	2.1	20	82	8	50	40	2	0	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40477477--40477525	20	2.5	20	86	0	71	51	0	4	44	1.20
40477613--40477652	20	2.0	20	95	0	71	42	15	12	30	1.83
40490467--40490530	22	2.8	23	81	9	69	67	25	0	7	1.17
40498442--40498507	22	3.0	21	82	10	69	16	28	21	33	1.95
40506129--40506187	22	2.6	22	89	2	82	20	25	16	37	1.93
40509769--40509946	27	6.6	27	81	3	169	29	28	14	26	1.95
40509790--40509945	82	1.9	81	85	3	215	29	28	14	26	1.95
40509769--40509945	54	3.3	54	79	6	187	29	28	14	26	1.95
40513725--40513807	39	2.1	41	84	4	107	26	16	25	31	1.97
40520184--40520225	7	6.0	7	85	0	57	35	0	35	28	1.58
40520184--40520225	14	3.0	14	92	0	66	35	0	35	28	1.58
40520185--40520225	21	2.0	21	90	9	66	34	0	36	29	1.58
40522804--40522863	29	2.1	29	84	6	77	66	1	5	26	1.21
40534960--40535032	30	2.4	30	79	6	76	50	0	1	47	1.09
40535309--40535383	33	2.3	33	92	0	123	45	16	10	28	1.80
40538200--40538249	25	2.0	26	84	4	66	64	12	12	12	1.51
40545209--40545265	27	2.2	25	84	12	71	57	1	0	40	1.09
40551057--40551105	24	2.0	24	100	0	98	44	8	24	22	1.79
40575950--40576002	15	3.7	15	80	10	65	18	24	32	24	1.97
40575965--40575989	13	1.9	13	100	0	50	16	28	32	24	1.96
40576039--40576092	21	2.6	20	82	5	63	40	16	18	24	1.90
40576301--40576353	25	2.1	25	82	0	61	39	22	16	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40581059--40581160	27	3.8	26	81	11	116	38	21	23	16	1.93
40582405--40582438	17	1.9	18	88	5	52	76	0	23	0	0.79
40588951--40589062	27	4.2	26	83	7	125	37	21	24	16	1.94
40591307--40591377	29	2.4	29	100	0	142	21	16	25	36	1.94
40591384--40591515	65	2.0	65	82	2	158	18	15	31	35	1.91
40606988--40607056	30	2.3	30	92	0	111	23	26	15	34	1.95
40607188--40607221	18	1.9	18	88	5	52	52	2	0	44	1.16
40610643--40610718	39	2.0	38	82	7	91	38	9	1	51	1.42
40611570--40611601	15	2.1	15	100	0	64	40	6	25	28	1.79
40614133--40614227	41	2.3	40	82	5	109	65	7	2	25	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250