genome.fa.s9.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  170  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54565073--54565139	12	5.5	12	70	20	50	64	0	2	32	1.09
54565243--54565267	12	2.1	12	100	0	50	60	0	8	32	1.26
54565308--54565353	11	3.9	11	78	15	56	69	0	2	28	1.00
54565308--54565389	25	3.2	26	81	10	98	64	0	2	32	1.07
54571963--54572030	23	2.8	23	75	16	59	51	2	2	42	1.32
54571963--54572007	18	2.4	19	88	3	65	51	4	0	44	1.21
54573613--54573643	16	1.9	16	93	0	53	48	6	12	32	1.67
54575088--54575128	2	20.5	2	100	0	82	48	0	0	51	1.00
54576419--54576462	19	2.4	19	85	7	56	54	4	6	34	1.47
54577099--54577144	24	1.9	24	95	0	83	28	0	0	71	0.86
54577956--54577995	5	8.2	5	86	13	57	20	0	0	80	0.72
54577956--54577992	19	1.9	19	89	10	58	18	0	0	81	0.70
54580891--54580922	15	2.1	16	88	11	50	65	3	6	25	1.31
54591232--54591273	19	2.3	19	87	4	59	64	0	0	35	0.94
54591388--54591426	11	3.5	11	85	0	60	64	10	5	20	1.44
54591383--54591447	22	3.0	22	86	0	85	66	15	6	12	1.43
54598298--54598363	33	2.0	33	96	0	123	53	6	6	34	1.51
54598498--54598560	31	2.0	31	87	6	92	47	7	6	38	1.58
54606807--54606854	25	1.9	25	83	8	62	54	0	2	43	1.12
54607296--54607321	6	4.3	6	100	0	52	50	15	34	0	1.45
54609138--54609180	19	2.2	19	83	4	50	27	6	2	62	1.33
54614498--54614530	13	2.5	13	95	0	57	42	6	27	24	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54615220--54615355	66	2.1	66	100	0	272	30	11	4	52	1.57
54619934--54619991	22	2.6	23	75	10	57	22	15	17	44	1.86
54624146--54624216	20	3.6	19	79	9	63	53	5	4	36	1.44
54624173--54624221	19	2.6	19	84	9	57	53	4	2	40	1.32
54624212--54624258	19	2.6	18	86	6	67	53	2	0	44	1.12
54624212--54624253	19	2.3	19	91	4	68	52	0	0	47	1.00
54624247--54624285	19	2.1	19	85	9	53	74	2	0	23	0.94
54624585--54624624	21	1.9	21	90	10	64	55	10	12	22	1.67
54626077--54626128	21	2.5	21	80	0	77	21	25	34	19	1.96
54627324--54627607	48	5.9	48	71	5	216	25	28	19	26	1.98
54627325--54627604	96	2.9	97	84	5	340	26	28	18	26	1.98
54628165--54628221	30	1.9	30	100	0	114	42	17	3	36	1.67
54636977--54637058	41	2.0	40	90	2	128	19	12	31	36	1.89
54643984--54644018	17	2.0	18	88	5	54	65	11	2	20	1.37
54648679--54648735	23	2.5	23	82	5	71	63	1	0	35	1.05
54649658--54649696	6	6.5	6	90	0	51	20	23	12	43	1.86
54653122--54653343	111	2.0	111	100	0	444	31	16	21	30	1.95
54662635--54662661	6	4.5	6	100	0	54	14	0	0	85	0.61
54665887--54665943	30	1.9	30	85	7	80	21	31	28	19	1.97
54671296--54671339	22	2.0	22	83	16	56	59	0	0	40	0.98
54674388--54674489	55	1.9	54	90	7	156	45	10	2	41	1.54
54674497--54674534	17	2.4	16	82	8	51	31	0	7	60	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54696227--54696292	31	2.1	31	88	0	96	50	16	4	28	1.65
54696727--54696766	21	1.9	21	89	0	62	72	0	5	22	1.04
54702601--54702673	37	2.0	37	94	0	128	42	4	23	30	1.73
54703284--54703322	20	2.0	20	100	0	78	58	5	15	20	1.55
54704857--54704903	3	15.3	3	91	4	76	36	0	0	63	0.94
54704979--54705047	33	2.1	33	84	10	88	53	1	1	43	1.18
54705652--54705685	17	1.9	18	88	5	52	41	0	23	35	1.55
54709183--54709255	21	3.5	21	84	0	83	13	19	27	39	1.89
54714537--54714766	115	2.0	113	88	5	338	37	9	16	36	1.81
54716085--54716135	20	2.7	19	76	8	50	25	15	3	54	1.58
54717914--54717961	11	4.1	11	78	21	53	85	0	8	6	0.74
54717909--54717964	26	2.2	25	93	3	94	85	0	7	7	0.73
54717917--54717955	15	2.5	15	95	4	69	87	0	7	5	0.68
54718455--54718506	23	2.3	22	86	6	68	34	5	1	57	1.33
54718633--54718689	28	2.1	28	90	3	89	36	1	5	56	1.32
54718827--54718868	21	2.0	21	85	0	57	38	9	7	45	1.64
54723501--54723914	159	2.6	159	94	1	706	26	17	22	33	1.96
54723805--54724008	75	2.8	73	90	1	300	27	16	25	30	1.97
54723805--54724179	73	4.9	73	80	10	405	26	16	24	32	1.96
54723646--54724179	234	2.3	228	85	5	685	26	17	23	33	1.96
54723878--54724539	159	4.0	161	82	10	702	27	16	21	34	1.94
54723932--54724094	86	1.9	87	89	3	258	25	15	23	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54724178--54724342	74	2.2	74	90	4	253	29	13	18	37	1.90
54723509--54724333	392	2.1	387	81	8	947	26	16	22	34	1.95
54724270--54724629	185	2.0	176	81	9	413	29	16	18	35	1.93
54724343--54724508	79	2.1	80	89	1	253	29	17	20	32	1.95
54724529--54724699	89	1.9	90	85	1	236	29	17	19	33	1.95
54727295--54727340	22	2.2	22	84	7	60	32	6	8	52	1.58
54731066--54731101	4	9.0	4	87	0	54	25	22	2	50	1.63
54735261--54735627	46	7.6	49	86	8	431	34	14	22	29	1.93
54735275--54735627	196	1.8	196	92	0	598	34	14	22	28	1.93
54735591--54735736	37	4.0	37	91	1	233	36	15	22	24	1.93
54735261--54735632	144	2.6	143	87	7	373	34	14	22	29	1.93
54740671--54740697	11	2.5	11	100	0	54	92	7	0	0	0.38
54741292--54741324	13	2.6	13	90	4	50	33	0	0	66	0.92
54745264--54745724	87	5.4	85	86	3	581	27	18	17	36	1.93
54747939--54747984	18	2.6	18	74	16	51	28	6	2	63	1.31
54748666--54748771	49	2.1	50	87	3	151	34	5	21	37	1.77
54748666--54748771	25	4.2	25	91	3	151	34	5	21	37	1.77
54754167--54754258	26	3.5	26	98	0	166	32	6	26	34	1.82
54757162--54757207	22	2.2	22	84	7	60	32	6	8	52	1.58
54758782--54758846	29	2.2	28	81	7	76	38	7	13	40	1.74
54760967--54761017	2	25.5	2	83	0	66	45	3	3	47	1.40
54764157--54764199	12	3.5	12	79	17	52	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54765603--54765635	9	3.8	9	84	8	50	12	0	0	87	0.53
54765605--54765637	16	2.1	16	100	0	66	12	0	0	87	0.53
54776086--54776141	19	2.6	21	70	18	53	46	1	5	46	1.36
54788300--54788369	34	2.1	33	82	10	81	50	2	14	32	1.58
54789463--54789510	18	2.6	18	80	16	53	47	0	0	52	1.00
54790002--54790087	10	8.3	10	69	7	55	61	6	1	30	1.29
54793618--54793655	12	3.2	12	88	3	51	5	10	0	84	0.77
54793636--54793660	12	2.1	12	100	0	50	16	8	0	76	1.02
54793654--54793691	8	4.8	8	83	9	51	39	0	2	57	1.12
54793629--54793667	20	2.0	19	85	5	51	17	7	0	74	1.05
54797353--54797425	27	2.7	27	84	0	92	30	31	16	21	1.95
54798912--54798955	15	3.0	15	76	6	54	52	0	0	47	1.00
54798935--54798979	19	2.3	20	78	21	51	60	0	0	40	0.97
54798912--54798963	13	3.8	13	74	16	52	53	0	0	46	1.00
54799171--54799232	29	2.1	29	85	5	81	20	24	4	50	1.68
54800167--54800207	17	2.4	17	80	12	57	65	0	0	34	0.93
54800664--54800702	18	2.1	18	86	13	53	61	7	0	30	1.24
54800818--54800861	17	2.4	18	85	7	54	36	20	2	40	1.65
54801894--54801938	4	11.2	4	83	9	56	0	20	2	77	0.87
54802627--54802855	104	2.2	104	80	2	280	38	10	22	27	1.88
54810902--54810936	16	2.3	15	90	5	52	62	2	2	31	1.24
54811051--54811110	23	2.9	20	70	15	59	56	5	6	31	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54811087--54811299	23	8.9	25	74	11	126	55	4	6	34	1.44
54811254--54811299	25	1.9	25	86	8	69	60	0	4	34	1.16
54811778--54811876	30	3.3	30	94	0	180	17	6	50	26	1.69
54812518--54812825	88	3.5	87	79	7	304	34	19	16	29	1.94
54812586--54812824	87	2.7	88	80	7	281	34	19	16	29	1.94
54812510--54812825	175	1.8	174	82	8	417	34	19	16	29	1.94
54812754--54813303	77	7.2	76	80	10	558	34	21	16	28	1.94
54812788--54813389	155	3.9	155	80	12	515	35	20	16	28	1.94
54813498--54813688	71	2.6	72	80	6	206	34	15	14	35	1.89
54813686--54813969	99	2.9	99	87	2	374	39	17	16	25	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250