genome.fa.s9.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  135  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43518073--43518121	24	2.0	24	92	0	80	36	20	10	32	1.86
43525558--43525591	18	1.9	18	88	5	52	23	26	29	20	1.99
43528963--43529223	46	5.6	47	71	22	153	28	18	28	23	1.98
43529010--43529273	46	5.7	47	82	9	292	29	18	28	23	1.98
43529010--43529274	93	2.8	94	86	5	351	29	18	28	23	1.98
43529010--43529272	139	1.9	142	88	7	403	29	18	28	23	1.98
43533950--43534009	30	2.0	30	100	0	120	50	0	30	20	1.49
43542151--43542247	40	2.5	38	81	8	117	18	21	27	31	1.97
43548755--43548782	14	2.0	14	100	0	56	71	0	28	0	0.86
43551593--43551815	79	2.8	80	92	3	371	23	22	27	26	2.00
43551593--43551815	40	5.6	40	91	3	362	23	22	27	26	2.00
43559456--43559637	39	4.6	40	81	8	187	23	20	27	28	1.99
43559575--43559683	39	2.8	38	82	8	114	26	22	27	23	1.99
43564625--43564890	104	2.6	104	92	3	439	19	21	30	29	1.97
43566134--43566428	147	2.0	148	97	0	565	35	19	9	35	1.84
43567750--43567781	11	2.9	11	100	0	64	46	18	6	28	1.73
43568616--43568920	40	7.7	40	93	1	515	26	29	22	21	1.99
43570193--43570300	37	2.9	37	94	0	180	25	31	19	24	1.98
43570449--43571153	48	14.7	48	96	0	1266	31	26	6	35	1.82
43572150--43572445	148	2.0	148	97	0	565	35	18	9	35	1.84
43575275--43575481	53	3.8	54	76	3	193	20	24	17	37	1.94
43579823--43579934	58	1.9	58	92	0	188	30	17	21	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43586511--43586581	34	2.1	34	100	0	142	49	22	8	19	1.75
43600769--43600863	40	2.4	40	85	0	118	33	24	18	23	1.97
43602148--43602216	33	2.1	33	89	5	104	40	13	27	18	1.88
43602869--43603173	103	3.0	103	81	4	305	33	19	17	29	1.95
43608666--43608770	53	2.0	53	84	0	138	20	23	15	40	1.91
43610002--43610053	25	2.1	25	96	0	95	46	5	9	38	1.61
43616094--43616300	53	3.8	54	78	1	191	19	23	18	38	1.93
43619299--43619335	17	2.2	17	100	0	74	54	5	21	18	1.64
43620071--43620114	16	2.8	16	100	0	88	36	0	36	27	1.57
43620093--43620183	45	2.0	44	85	2	119	31	5	27	35	1.80
43620348--43620382	18	2.0	17	88	5	52	54	0	0	45	0.99
43620326--43620854	120	4.4	120	94	2	886	51	4	0	43	1.27
43620678--43620835	26	6.5	26	65	22	83	53	2	0	43	1.19
43620585--43620738	18	8.9	18	66	18	76	54	2	0	42	1.19
43620326--43620854	237	2.2	239	91	3	875	51	4	0	43	1.27
43625263--43625311	14	3.8	13	76	15	57	57	2	2	38	1.22
43631060--43631092	17	1.9	18	88	11	52	42	9	0	48	1.35
43633403--43633431	3	9.7	3	100	0	58	65	0	0	34	0.93
43633688--43633720	2	16.5	2	93	0	57	45	0	3	51	1.16
43638466--43638508	18	2.5	17	75	17	52	58	0	11	30	1.34
43647191--43647238	18	2.6	19	80	12	55	64	6	2	27	1.28
43647401--43647438	20	1.9	20	84	10	51	63	2	2	31	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43649059--43649833	83	9.2	83	84	9	973	27	19	19	32	1.96
43649081--43649809	239	2.9	242	86	8	910	27	19	20	33	1.97
43649490--43649839	184	1.9	184	93	0	601	27	18	19	33	1.96
43654114--43654151	18	2.1	19	85	14	53	36	23	7	31	1.84
43661874--43662029	39	3.9	39	76	14	117	64	0	2	32	1.11
43661901--43661974	17	4.2	16	77	16	67	66	0	2	31	1.06
43661900--43661969	19	3.7	20	76	17	69	62	0	2	34	1.10
43661917--43662019	16	5.6	18	70	21	70	66	0	0	32	1.05
43661936--43662029	40	2.3	40	77	10	104	64	1	0	34	1.00
43678917--43679124	40	5.3	40	91	5	277	24	22	27	25	1.99
43678917--43679124	78	2.7	78	86	8	280	24	22	27	25	1.99
43686895--43687110	40	5.5	40	91	4	291	24	23	28	24	2.00
43690976--43691059	26	3.2	26	96	0	150	35	23	5	34	1.80
43692798--43693039	100	2.4	97	83	4	288	24	19	26	29	1.98
43692795--43693027	49	4.7	50	80	6	267	24	18	27	29	1.98
43712415--43712583	45	3.8	45	81	6	150	25	27	23	24	2.00
43712454--43712583	45	2.9	44	86	4	172	27	26	22	23	1.99
43712581--43712708	38	3.4	38	92	0	202	32	24	21	21	1.98
43718892--43718949	10	5.7	10	75	4	53	32	20	29	17	1.95
43718888--43718949	20	3.1	20	84	6	81	33	19	29	17	1.95
43718892--43718957	20	3.2	20	82	2	78	30	19	28	21	1.98
43720940--43720977	17	2.2	18	85	4	51	2	21	2	73	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43721025--43721071	17	2.6	17	78	18	51	4	25	4	65	1.29
43722992--43723058	20	3.3	20	78	2	71	29	16	28	25	1.97
43724780--43724810	3	10.3	3	92	0	53	70	0	29	0	0.87
43724756--43724810	18	3.1	18	86	0	74	72	0	20	7	1.07
43728468--43728594	23	5.7	23	71	14	104	51	2	1	44	1.24
43728497--43728538	20	2.3	18	80	15	50	52	0	0	47	1.00
43728432--43728596	88	1.9	88	97	0	312	49	3	3	44	1.33
43728502--43728539	20	1.9	20	94	0	67	50	0	0	50	1.00
43731047--43731095	25	2.0	25	95	0	89	26	12	18	42	1.85
43743333--43743386	22	2.5	22	81	3	65	14	31	35	18	1.91
43747579--43747729	42	3.6	42	80	1	176	29	23	16	29	1.96
43750996--43751250	40	6.4	40	94	2	369	23	22	27	25	2.00
43759053--43759293	40	6.1	40	91	5	350	22	23	27	25	2.00
43759053--43759293	79	3.0	80	89	4	348	22	23	27	25	2.00
43764438--43764470	17	1.9	17	93	0	57	21	18	21	39	1.93
43769760--43769803	19	2.3	19	92	0	70	6	34	9	50	1.61
43772999--43773109	53	2.1	54	93	1	188	24	34	27	14	1.94
43782345--43782369	13	1.9	13	100	0	50	72	0	0	28	0.86
43782851--43782888	8	4.8	8	87	12	51	21	2	0	76	0.91
43782851--43782894	17	2.6	17	85	7	54	20	4	0	75	0.98
43785433--43785531	34	2.9	34	85	4	128	25	19	11	44	1.83
43785516--43785695	35	5.2	35	72	7	125	34	20	13	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43785438--43785633	34	5.7	34	70	9	112	29	19	11	38	1.88
43785484--43785682	104	1.9	104	83	0	254	32	20	12	34	1.90
43785510--43785725	104	2.1	104	79	1	227	33	19	13	32	1.91
43786765--43786811	25	2.0	25	83	8	62	27	14	4	53	1.60
43787072--43787291	46	5.0	46	84	9	269	21	24	15	39	1.92
43787205--43787280	38	2.0	38	100	0	152	23	26	18	31	1.97
43789403--43789480	27	2.9	28	70	14	72	56	5	1	37	1.30
43790782--43790958	69	2.6	69	80	3	194	27	24	13	34	1.93
43798466--43798544	37	2.1	37	90	0	122	25	31	18	24	1.98
43798663--43799718	47	22.1	47	94	2	1752	30	30	8	31	1.86
43798663--43799718	96	11.0	96	94	2	1790	30	30	8	31	1.86
43798663--43799718	143	7.4	141	94	2	1752	30	30	8	31	1.86
43803389--43803425	8	4.6	8	93	0	65	0	24	18	56	1.41
43806662--43806738	20	4.0	19	73	8	66	42	19	5	32	1.73
43806919--43806983	24	2.7	23	84	11	78	33	12	24	29	1.92
43817883--43818011	30	4.3	30	76	4	116	27	22	13	36	1.91
43817954--43818022	31	2.3	30	87	2	93	26	24	10	39	1.87
43838771--43838800	15	2.0	15	100	0	60	46	20	20	13	1.83
43841716--43841808	34	2.7	34	93	0	150	23	25	23	26	2.00
43841812--43841879	18	3.8	18	75	14	77	39	17	19	23	1.92
43842138--43842187	23	2.2	23	82	13	59	40	18	16	26	1.90
43842222--43842345	27	4.7	27	75	11	105	22	21	17	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43845004--43845077	25	2.9	25	81	2	76	36	16	5	41	1.71
43866508--43866578	31	2.3	31	97	0	133	26	25	16	30	1.97
43866602--43866693	42	2.2	42	90	0	139	34	20	14	30	1.92
43866839--43866935	25	3.8	26	91	1	144	27	23	22	25	2.00
43866985--43867071	20	4.3	20	91	2	131	32	18	10	39	1.84
43867777--43867860	27	3.1	27	91	3	125	20	25	22	32	1.98
43867777--43867870	27	3.5	26	87	7	118	20	24	20	35	1.96
43867907--43868231	27	12.0	27	79	6	221	31	9	19	39	1.83
43868011--43868204	81	2.4	80	83	6	248	30	9	21	38	1.85
43868011--43868217	80	2.6	79	82	9	256	30	9	20	40	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250