genome.fa.s9.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  152  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49112665--49112745	21	3.8	21	75	1	90	16	16	23	44	1.86
49113018--49113109	40	2.3	40	79	3	96	32	22	19	25	1.97
49113081--49113259	75	2.4	75	86	0	232	31	19	19	29	1.96
49113608--49113646	14	2.8	14	88	0	60	25	0	25	48	1.51
49113642--49113696	22	2.6	21	82	8	67	25	3	25	45	1.70
49115995--49116090	39	2.5	39	82	0	102	21	25	32	20	1.98
49124976--49125512	47	11.4	47	93	1	871	32	8	29	29	1.87
49124976--49125512	93	5.7	94	93	1	880	32	8	29	29	1.87
49124976--49125512	140	3.8	140	92	2	878	32	8	29	29	1.87
49125316--49125448	46	3.0	40	96	2	131	33	9	29	28	1.88
49125631--49125709	37	2.1	37	88	4	115	25	18	30	25	1.98
49128616--49128721	39	2.7	39	85	2	115	22	23	31	22	1.99
49129715--49129778	7	8.9	7	81	6	65	18	0	34	46	1.49
49129920--49129950	16	1.9	16	93	0	53	45	9	3	41	1.53
49129926--49129982	25	2.2	25	81	3	69	38	10	3	47	1.55
49130031--49130060	15	2.0	15	93	0	51	50	0	0	50	1.00
49132276--49132315	17	2.3	18	91	4	64	30	12	27	30	1.93
49140135--49140200	34	1.9	34	84	9	89	36	4	4	54	1.41
49140135--49140203	35	2.0	35	83	11	88	36	4	4	55	1.40
49140337--49140567	43	5.4	43	86	2	315	26	18	26	28	1.98
49143517--49143713	85	2.3	85	83	0	241	25	18	26	29	1.98
49143556--49143758	85	2.4	85	77	3	194	27	19	23	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49147384--49147443	23	2.6	23	94	2	102	26	8	15	50	1.72
49150939--49151091	42	3.6	40	81	11	157	25	20	26	28	1.99
49150934--49151091	84	1.9	85	91	1	264	24	20	26	28	1.99
49155690--49155744	29	2.0	28	82	7	67	50	0	1	47	1.11
49156791--49156837	14	3.4	14	79	8	51	31	2	4	61	1.27
49156914--49156948	18	1.9	18	94	0	61	28	2	0	68	1.04
49156830--49157117	140	2.1	141	82	7	347	42	11	5	41	1.63
49160126--49160507	136	2.8	134	85	3	512	32	14	12	39	1.84
49161201--49161239	18	2.2	18	90	0	60	48	10	10	30	1.70
49162407--49162463	25	2.3	25	100	0	114	59	0	3	36	1.14
49163944--49163987	23	1.9	23	81	9	54	31	4	9	54	1.52
49168464--49168534	35	2.0	35	91	0	115	35	19	11	33	1.88
49168982--49169075	37	2.5	38	78	13	97	40	39	9	10	1.73
49176421--49176483	31	2.0	31	93	0	108	31	19	12	36	1.89
49177424--49177480	25	2.3	26	79	14	66	57	0	3	38	1.16
49183685--49183747	28	2.2	28	82	0	81	34	6	26	31	1.82
49186994--49187135	40	3.5	40	85	4	187	26	24	25	23	2.00
49192317--49192379	28	2.2	28	91	0	99	31	6	30	31	1.83
49193222--49193301	23	3.3	24	76	15	85	26	26	15	32	1.95
49196312--49196377	29	2.2	29	81	7	80	37	0	24	37	1.56
49197170--49197224	26	2.1	26	96	0	101	38	1	18	41	1.61
49197176--49197231	26	2.2	26	90	0	85	39	1	17	41	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49204911--49204949	18	2.2	17	86	4	51	15	25	41	17	1.89
49205877--49206060	91	2.0	91	95	0	332	38	16	14	30	1.88
49214567--49214611	18	2.6	16	83	13	54	35	2	4	57	1.31
49214802--49214854	14	3.8	14	70	9	54	56	5	5	32	1.46
49214806--49214864	28	2.1	28	87	6	84	49	5	8	37	1.55
49215048--49215086	17	2.3	17	86	0	51	38	5	0	56	1.22
49216548--49216582	10	3.7	9	88	11	52	22	0	0	77	0.78
49216586--49216634	24	2.1	23	85	14	66	44	0	2	53	1.12
49216631--49216685	21	2.5	22	88	8	78	34	1	1	61	1.17
49216917--49216969	18	2.8	20	80	8	56	13	7	3	75	1.15
49216917--49216958	20	2.2	19	86	4	57	11	7	4	76	1.15
49217010--49217139	21	5.9	23	67	8	65	44	0	1	53	1.15
49217017--49217140	22	5.7	21	74	15	83	44	0	1	53	1.16
49217017--49217123	42	2.4	45	81	15	111	42	0	1	55	1.17
49217043--49217101	19	2.8	21	82	12	77	37	0	0	62	0.95
49217162--49217229	31	2.3	30	78	14	79	32	0	4	63	1.14
49217189--49217247	22	2.7	23	75	19	72	33	0	3	62	1.12
49217677--49217747	20	3.5	20	72	16	56	76	1	9	12	1.09
49220257--49220347	47	1.9	47	100	0	182	32	25	17	24	1.97
49220626--49220664	19	2.1	19	85	9	53	38	5	7	48	1.54
49220961--49221356	147	2.6	152	82	8	493	42	6	5	44	1.53
49221925--49221976	24	2.2	24	85	0	68	40	3	9	46	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49223065--49223326	136	1.9	136	93	0	452	30	14	14	39	1.87
49225707--49225765	30	1.9	31	86	3	84	49	5	18	27	1.68
49226021--49226045	8	3.1	8	100	0	50	24	0	0	76	0.80
49226738--49226768	14	2.2	14	94	0	53	58	3	29	9	1.46
49229346--49229395	26	1.9	25	84	15	66	32	26	4	38	1.75
49232456--49232527	38	1.9	37	85	2	99	45	1	5	47	1.34
49233814--49233999	73	2.5	73	99	0	363	27	6	24	40	1.80
49238209--49238234	3	8.7	3	100	0	52	30	0	0	69	0.89
49247143--49247173	11	2.8	11	90	0	53	67	0	0	32	0.91
49248068--49248097	15	2.0	15	93	0	51	70	0	0	30	0.88
49249688--49249732	19	2.4	19	88	0	72	60	2	0	37	1.09
49250338--49250372	17	2.0	18	88	5	54	31	8	11	48	1.69
49251643--49251684	21	2.0	21	90	0	66	38	26	16	19	1.92
49252822--49252877	21	2.5	23	77	8	62	46	1	3	48	1.30
49252969--49253037	35	2.0	35	85	5	95	49	0	4	46	1.21
49257847--49257904	22	2.6	21	73	10	53	60	0	8	31	1.27
49257923--49258022	3	33.7	3	69	22	52	62	0	4	34	1.14
49257864--49258007	50	2.8	50	80	13	120	61	1	5	31	1.27
49257972--49258021	20	2.5	19	87	6	64	66	0	2	32	1.03
49257967--49258099	49	2.8	45	72	19	117	59	0	4	35	1.23
49259732--49260523	206	3.8	207	93	0	1284	27	23	18	30	1.98
49265616--49265692	40	1.9	40	94	5	138	35	5	22	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49272682--49272757	40	1.9	39	97	2	143	34	5	23	36	1.78
49276903--49276935	13	2.5	13	95	0	57	15	30	24	30	1.95
49282912--49283027	3	39.0	3	70	22	59	61	0	3	35	1.13
49282908--49283029	20	5.9	20	65	26	60	61	0	3	35	1.12
49282912--49283040	30	4.2	31	75	12	108	61	0	3	34	1.15
49282856--49282996	50	2.8	50	81	11	146	62	1	4	31	1.23
49282910--49283040	14	8.9	14	69	20	63	61	0	3	35	1.14
49282809--49283030	19	11.8	19	68	23	82	60	0	4	34	1.23
49285899--49286057	27	5.9	27	82	11	184	35	22	23	18	1.96
49285917--49286057	54	2.6	54	92	2	239	35	24	23	17	1.95
49288429--49288493	3	21.7	3	75	6	51	58	3	4	33	1.34
49288662--49288711	3	16.3	3	95	4	91	68	0	0	32	0.90
49290073--49290169	44	2.2	44	83	0	122	28	15	22	32	1.95
49290149--49290580	45	9.6	45	69	8	150	29	18	21	31	1.97
49290201--49290589	44	8.7	46	68	11	173	28	17	22	31	1.97
49290072--49290595	179	2.9	179	90	0	789	28	17	21	32	1.96
49290594--49290722	43	3.0	43	80	4	134	28	23	19	28	1.98
49290646--49290918	98	2.8	98	82	1	323	28	20	20	31	1.97
49291355--49291548	46	4.2	46	87	0	253	24	26	14	34	1.94
49295149--49295292	74	1.9	74	97	0	270	25	20	15	38	1.91
49295989--49296034	24	2.0	23	86	4	65	15	26	13	45	1.82
49298317--49298407	3	29.3	3	84	6	92	58	1	7	32	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49303704--49303824	58	2.1	59	83	6	149	49	6	16	27	1.70
49329160--49329208	21	2.3	21	82	6	55	22	4	2	71	1.13
49331102--49331171	33	2.1	33	82	15	83	40	0	5	54	1.24
49331091--49331193	33	3.0	33	74	9	82	45	0	4	48	1.30
49331416--49331453	18	2.1	19	85	14	53	76	0	23	0	0.79
49332150--49332230	40	2.0	40	82	0	99	34	7	16	41	1.76
49332443--49332549	45	2.4	45	85	0	133	23	16	17	42	1.89
49335899--49335938	16	2.3	18	83	12	57	75	5	2	17	1.10
49340829--49340873	15	3.0	15	80	0	54	17	0	4	77	0.92
49344591--49344615	3	8.3	3	100	0	50	68	0	0	32	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250