genome.fa.s9.2.7.7.80.10.50.1000.218.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  218  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67434594--67434657	22	2.9	23	77	15	71	64	3	3	29	1.24
67434648--67434733	40	2.1	41	87	6	131	45	18	19	16	1.86
67434898--67434935	18	2.1	19	85	10	60	7	42	2	47	1.46
67437828--67437894	33	2.0	33	91	0	107	14	25	14	44	1.84
67437919--67439799	241	7.8	241	97	0	3537	34	18	14	32	1.91
67439919--67440046	9	13.6	9	76	9	121	46	21	0	31	1.57
67439936--67440013	39	2.0	39	97	0	147	46	21	0	32	1.52
67439932--67440044	57	2.0	57	89	0	172	46	23	0	30	1.58
67445901--67445967	31	2.2	31	83	0	80	17	4	17	59	1.53
67446020--67446117	43	2.3	43	87	0	133	24	23	22	29	1.99
67446425--67446449	12	2.1	12	100	0	50	40	8	0	52	1.31
67450582--67450680	30	3.3	30	89	0	162	26	49	7	17	1.72
67451158--67451285	23	5.5	23	71	12	93	35	6	3	54	1.41
67451223--67451367	25	6.0	25	78	7	86	33	6	4	54	1.48
67451158--67451385	48	4.9	46	72	12	146	33	6	3	55	1.44
67451232--67451372	72	1.9	73	81	4	169	33	6	4	55	1.47
67451357--67451405	23	2.1	23	85	7	64	32	6	2	59	1.34
67451518--67451552	16	2.3	15	90	5	52	31	2	2	62	1.24
67452302--67452510	39	5.4	39	97	0	391	21	19	29	29	1.98
67452486--67452674	39	4.8	39	89	2	218	23	20	24	31	1.98
67459468--67459511	16	2.8	16	82	6	54	38	11	0	50	1.39
67462884--67462961	39	2.0	39	92	0	129	47	12	12	26	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67468580--67468892	46	6.8	46	90	1	412	21	23	13	40	1.89
67472970--67473044	33	2.3	34	84	9	93	53	5	1	40	1.32
67474060--67474097	6	6.7	6	87	6	53	0	21	0	78	0.74
67477919--67478035	57	2.1	57	100	0	234	34	6	33	25	1.83
67477933--67478048	57	2.1	57	86	1	162	33	12	31	23	1.91
67485358--67485429	36	2.0	36	94	0	126	29	45	0	25	1.53
67490311--67490367	19	3.3	17	78	9	53	47	5	1	45	1.35
67490311--67490368	18	3.3	17	83	11	64	48	5	1	44	1.35
67490608--67490632	13	1.9	13	100	0	50	72	0	0	28	0.86
67495316--67495348	17	1.9	17	93	0	57	54	3	9	33	1.47
67496145--67496283	39	3.6	38	90	2	190	29	15	5	50	1.65
67497435--67497520	45	1.9	45	90	0	136	25	31	13	29	1.94
67497614--67498991	210	6.6	210	89	3	1927	31	22	17	29	1.97
67506941--67506971	15	2.1	15	100	0	62	6	38	0	54	1.26
67507015--67507064	15	3.5	14	79	15	50	42	8	24	26	1.82
67507690--67507726	14	2.4	17	86	13	53	48	0	0	51	1.00
67507876--67507926	14	3.6	14	74	7	50	68	0	13	17	1.21
67507915--67507948	16	2.1	16	88	5	50	76	5	14	2	1.09
67513362--67513400	18	2.0	20	90	9	64	56	2	5	35	1.35
67513556--67513604	24	2.0	26	84	8	66	53	4	2	40	1.32
67514107--67514255	39	3.9	39	84	6	171	28	18	6	46	1.72
67515880--67515955	23	3.3	23	74	7	64	39	2	0	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67517034--67517098	33	2.0	32	90	3	103	44	10	9	35	1.71
67518104--67518200	33	2.9	34	72	20	87	50	1	1	47	1.14
67522573--67522647	31	2.5	31	84	6	91	58	0	4	37	1.17
67526750--67526802	21	2.7	18	78	16	52	64	0	1	33	1.05
67533295--67533342	3	16.0	3	100	0	96	0	33	0	66	0.92
67533656--67533731	21	3.5	22	69	18	61	40	1	1	56	1.16
67537422--67537660	72	3.3	72	91	1	374	55	14	5	24	1.61
67538157--67538182	13	2.0	13	100	0	52	46	15	0	38	1.46
67539373--67539420	18	2.7	18	93	0	78	39	14	10	35	1.80
67543835--67543910	3	25.0	3	77	15	68	68	0	31	0	0.90
67543839--67543914	24	3.1	24	77	21	86	67	0	32	0	0.91
67543835--67543904	27	2.6	27	80	12	83	68	0	31	0	0.90
67543838--67543910	16	4.4	17	79	19	82	68	0	31	0	0.90
67543835--67543915	27	3.0	27	73	19	80	66	0	33	0	0.92
67543952--67543998	19	2.6	18	78	15	51	61	0	36	2	1.08
67543947--67544009	14	4.4	14	74	14	58	66	0	31	1	1.01
67544465--67544721	136	1.9	133	82	5	320	56	7	8	27	1.55
67544601--67545664	146	7.1	145	81	10	1146	56	6	7	29	1.53
67544894--67544929	12	2.8	13	87	4	56	75	0	2	22	0.94
67544601--67545664	305	3.6	297	84	7	1200	56	6	7	29	1.53
67545340--67545410	27	2.6	28	78	6	67	70	4	5	19	1.24
67547535--67547674	72	1.9	72	88	0	208	20	24	20	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67551650--67551735	35	2.5	35	86	3	111	47	10	1	40	1.45
67551693--67551718	9	2.9	9	100	0	52	65	11	0	23	1.25
67551836--67551903	15	4.1	16	73	19	50	1	32	0	66	1.01
67551839--67551874	18	2.0	17	89	10	54	0	33	0	66	0.92
67551837--67551887	19	2.6	19	81	9	59	0	35	0	64	0.94
67552044--67552088	19	2.4	19	88	0	63	8	11	8	71	1.32
67552043--67552079	19	1.9	19	94	0	65	8	13	8	70	1.34
67557353--67557445	39	2.5	37	80	7	98	27	29	22	20	1.98
67557800--67557828	3	10.0	3	92	7	51	65	0	0	34	0.93
67559113--67559147	16	2.2	16	89	0	52	2	14	8	74	1.17
67559151--67559228	15	4.9	17	65	22	53	50	1	0	48	1.09
67559153--67559193	14	2.6	17	85	14	61	53	0	0	46	1.00
67559173--67559211	12	3.4	11	80	13	51	46	2	0	51	1.14
67559147--67559227	24	3.4	24	77	13	87	49	1	0	49	1.08
67564127--67564169	21	2.0	21	82	8	52	23	20	4	51	1.66
67565213--67565305	39	2.5	37	80	7	98	27	29	22	20	1.98
67565660--67565686	3	9.0	3	100	0	54	66	0	0	33	0.92
67566972--67567006	16	2.2	16	89	0	52	2	14	8	74	1.17
67567010--67567087	15	4.9	17	65	22	53	50	1	0	48	1.09
67567012--67567052	14	2.6	17	85	14	61	53	0	0	46	1.00
67567032--67567070	12	3.4	11	80	13	51	46	2	0	51	1.14
67567006--67567086	24	3.4	24	77	13	87	49	1	0	49	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67570077--67570152	30	2.5	30	80	4	82	39	0	2	57	1.12
67579454--67579483	15	1.9	16	93	6	53	0	13	0	86	0.57
67579453--67579492	20	2.0	20	85	9	55	2	15	0	82	0.77
67582707--67582760	21	2.7	20	83	11	74	57	5	27	9	1.52
67582711--67582750	21	1.9	21	100	0	80	55	5	30	10	1.54
67587574--67587598	7	3.6	7	100	0	50	64	12	0	24	1.27
67588216--67588251	17	2.1	17	90	10	56	50	0	0	50	1.00
67589761--67589799	17	2.2	18	86	4	53	28	2	5	64	1.28
67595234--67595333	51	2.0	51	82	7	123	41	1	15	43	1.53
67597640--67597682	19	2.4	19	88	7	63	37	13	11	37	1.82
67597648--67597684	19	1.9	19	100	0	74	37	10	16	35	1.83
67597648--67597707	19	2.8	22	82	9	54	38	6	16	38	1.75
67606630--67606893	76	3.5	77	91	5	446	33	19	23	23	1.97
67606666--67606797	41	3.4	41	63	19	109	32	18	25	22	1.97
67606917--67607086	42	4.0	42	80	12	195	31	14	28	25	1.95
67606910--67607098	84	2.2	86	85	7	260	32	14	27	24	1.95
67607428--67607481	17	3.3	15	80	19	56	37	11	14	37	1.82
67607426--67607497	19	3.9	19	87	10	114	38	11	13	36	1.81
67607434--67607497	17	3.6	17	85	8	83	39	12	12	35	1.81
67607426--67607504	35	2.2	37	84	13	112	39	10	15	35	1.81
67609625--67609674	26	1.9	26	84	15	68	68	4	10	18	1.34
67609688--67609726	11	3.5	11	82	6	51	66	0	5	28	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67609793--67609840	24	2.0	24	96	4	89	66	12	8	12	1.44
67609797--67609847	24	2.2	23	85	3	66	70	11	5	11	1.32
67609821--67609917	46	2.1	46	80	14	103	69	7	7	16	1.34
67611527--67611867	134	2.5	134	84	2	434	28	22	18	30	1.97
67611433--67611863	45	9.7	44	72	5	247	28	23	18	29	1.97
67616196--67616224	4	7.2	4	100	0	58	75	0	24	0	0.80
67616986--67617096	47	2.4	47	83	6	145	26	16	22	35	1.95
67624218--67624328	47	2.4	47	83	6	145	26	16	22	35	1.95
67627386--67627578	47	4.0	48	80	11	182	24	16	28	30	1.96
67627364--67627546	47	3.8	47	77	11	174	26	15	27	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250