genome.fa.s9.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  172  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55069180--55069239	27	2.1	30	87	9	90	35	1	0	63	1.05
55073483--55073512	6	5.2	6	96	4	53	70	13	0	16	1.18
55082078--55082115	11	3.5	11	78	7	51	76	2	10	10	1.12
55082080--55082118	10	3.9	10	83	9	53	79	2	7	10	1.02
55085417--55085441	13	1.9	13	100	0	50	32	4	24	40	1.73
55086536--55086694	43	3.7	44	79	12	186	23	19	25	31	1.98
55086533--55086709	86	2.1	86	80	6	198	22	19	24	33	1.97
55087546--55087634	43	2.1	43	91	0	142	24	17	22	34	1.96
55089031--55089056	11	2.4	11	100	0	52	0	0	7	92	0.39
55091786--55091832	22	2.2	22	88	3	69	40	0	8	51	1.33
55091830--55091861	16	2.0	16	93	0	55	71	0	0	28	0.86
55092018--55092061	16	2.7	16	85	3	52	68	11	0	20	1.20
55094827--55094867	6	6.5	6	83	10	55	78	4	0	17	0.93
55094830--55094868	20	2.0	20	89	0	60	76	5	0	17	0.96
55094886--55094944	9	6.6	9	78	7	66	27	6	16	49	1.71
55094886--55094944	27	2.2	27	87	6	84	27	6	16	49	1.71
55097960--55098031	35	2.1	35	83	0	90	55	9	5	29	1.55
55098036--55098099	31	2.1	31	93	0	110	40	9	21	28	1.84
55100309--55100505	102	1.9	102	94	0	349	31	13	15	39	1.85
55101522--55101576	28	2.0	28	100	0	110	32	7	27	32	1.84
55115257--55115305	17	2.6	19	81	15	57	20	10	0	69	1.17
55117713--55117778	28	2.3	29	80	12	73	30	9	1	59	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55120963--55121026	30	2.1	30	81	16	71	37	3	3	56	1.31
55123868--55123907	22	1.9	21	85	10	55	42	12	12	32	1.80
55126328--55126386	28	2.1	28	80	0	64	25	3	5	66	1.28
55127585--55127640	22	2.5	22	94	2	94	48	5	10	35	1.61
55128130--55128222	46	2.0	46	81	8	109	41	1	1	55	1.14
55128189--55128265	20	4.1	20	68	23	60	44	1	0	54	1.08
55128194--55128266	21	3.5	20	80	12	76	43	1	0	54	1.08
55128324--55128356	14	2.3	15	89	5	50	48	0	0	51	1.00
55128633--55128674	16	2.8	15	82	10	50	54	0	4	40	1.21
55134885--55134965	42	1.9	42	97	0	153	35	11	19	33	1.87
55137634--55137725	29	3.2	28	87	1	105	22	15	32	29	1.95
55138993--55139025	18	1.9	17	88	11	50	45	12	15	27	1.81
55143959--55144010	21	2.5	22	81	15	65	11	3	21	63	1.43
55144165--55144296	45	3.0	45	83	6	160	28	19	16	35	1.94
55144180--55144339	44	3.6	44	81	2	160	31	18	17	32	1.94
55144180--55144390	88	2.3	89	77	9	194	31	18	17	32	1.94
55145348--55145409	30	2.1	30	96	0	115	24	14	24	37	1.93
55150251--55150279	4	7.2	4	100	0	58	75	0	0	24	0.80
55150377--55150511	3	45.3	3	70	12	73	57	3	7	31	1.44
55150684--55150710	12	2.2	12	100	0	54	40	0	7	51	1.30
55151022--55151185	81	2.0	81	95	0	292	44	4	28	22	1.72
55151684--55151721	17	2.2	18	90	4	60	28	0	7	63	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55152648--55152931	43	6.5	43	68	18	174	22	24	21	32	1.98
55152738--55152837	44	2.3	43	85	1	128	24	23	22	31	1.99
55152817--55152968	44	3.5	44	72	5	137	17	25	21	35	1.95
55152780--55153011	87	2.7	87	93	0	392	20	24	21	33	1.97
55155838--55155873	18	2.0	18	100	0	72	50	16	11	22	1.77
55164431--55164574	3	48.3	3	72	12	91	57	3	6	31	1.42
55164747--55164773	12	2.2	12	100	0	54	40	0	7	51	1.30
55165086--55165247	80	2.0	80	98	0	315	43	4	29	22	1.73
55165740--55165782	17	2.5	17	88	3	59	27	0	6	65	1.18
55166711--55167212	43	11.5	43	67	19	236	21	24	21	32	1.98
55166643--55167292	218	3.0	218	92	1	1027	21	24	21	32	1.98
55166801--55167292	43	11.3	43	67	7	267	21	23	21	32	1.98
55167061--55167292	87	2.7	87	94	0	401	19	24	22	33	1.97
55171720--55171754	17	2.0	18	94	5	63	22	5	11	60	1.52
55174464--55174524	9	6.8	9	84	0	68	31	8	18	42	1.79
55178451--55178583	47	2.8	49	79	16	172	29	29	20	21	1.98
55178459--55178599	46	3.0	44	77	14	135	29	29	19	21	1.98
55185956--55186128	47	3.7	47	87	9	239	28	29	19	21	1.98
55194083--55194111	4	7.2	4	100	0	58	75	0	0	24	0.80
55194209--55194343	3	45.3	3	70	12	73	57	4	6	31	1.45
55194516--55194542	12	2.2	12	100	0	54	40	0	7	51	1.30
55204341--55204393	21	2.5	21	75	6	54	15	7	16	60	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55206233--55206358	63	2.0	63	84	6	166	19	12	24	42	1.86
55206422--55207125	235	2.9	232	85	4	868	33	10	19	36	1.86
55208574--55208822	96	2.6	96	84	3	306	28	31	14	25	1.95
55210512--55210573	29	2.1	29	100	0	124	51	19	6	22	1.69
55212364--55212424	31	2.0	31	93	0	104	44	8	9	37	1.68
55215766--55215824	29	2.0	29	86	3	82	37	5	6	50	1.51
55228363--55228394	15	2.1	15	100	0	64	25	6	21	46	1.74
55229419--55229445	14	1.9	14	100	0	54	66	0	0	33	0.92
55230500--55230535	17	2.2	17	90	5	56	63	2	0	33	1.08
55231455--55231494	20	2.0	21	85	5	55	50	0	2	47	1.14
55231876--55231941	23	3.1	23	71	24	72	45	6	6	42	1.53
55237375--55237471	38	2.6	38	85	1	124	26	17	16	39	1.91
55241114--55241141	13	2.2	13	100	0	56	32	7	0	60	1.24
55248992--55249021	15	2.0	15	100	0	60	20	13	0	66	1.24
55250277--55250322	14	3.0	15	84	12	58	28	2	2	67	1.14
55250744--55250791	24	2.0	24	84	8	62	64	6	0	29	1.18
55251405--55251506	44	2.3	43	93	3	177	40	5	1	51	1.37
55251641--55251669	13	2.2	13	100	0	58	55	6	0	37	1.27
55251704--55251778	22	3.3	23	74	10	64	42	4	1	52	1.28
55254095--55254123	14	2.1	14	100	0	58	44	6	0	48	1.29
55254814--55254845	13	2.3	15	89	10	50	21	0	3	75	0.95
55260041--55260182	61	2.3	60	83	3	180	38	4	10	47	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55266746--55266803	21	2.8	20	73	14	55	51	1	3	43	1.28
55266951--55266995	24	1.9	24	81	4	56	42	11	0	46	1.39
55266977--55267022	24	2.0	23	83	12	58	45	4	0	50	1.21
55272976--55273040	19	3.6	19	78	12	75	52	0	0	47	1.00
55272974--55273040	18	3.8	18	73	15	68	52	0	0	47	1.00
55273642--55273667	10	2.6	10	100	0	52	42	0	0	57	0.98
55273805--55273877	33	2.2	32	83	7	85	54	8	1	35	1.39
55278892--55278947	22	2.5	22	80	8	60	51	0	1	46	1.11
55279190--55279252	27	2.3	29	79	17	73	49	0	4	46	1.23
55283581--55283622	22	1.9	22	95	0	75	45	11	4	38	1.62
55284050--55284074	11	2.3	11	100	0	50	44	20	0	36	1.52
55287334--55287389	24	2.3	24	87	3	76	37	0	0	62	0.95
55287336--55287387	11	4.5	11	81	9	68	34	0	0	65	0.93
55289512--55289739	46	5.0	46	89	4	277	42	14	21	21	1.87
55289513--55289727	92	2.3	92	88	4	310	43	13	21	21	1.86
55291127--55291154	13	2.2	13	100	0	56	35	0	14	50	1.43
55293149--55293352	53	3.8	53	73	7	133	37	16	22	23	1.93
55299155--55299218	16	4.4	14	71	21	51	0	28	0	71	0.86
55300298--55300499	87	2.3	87	82	0	233	25	20	18	35	1.95
55302173--55302221	25	2.0	25	87	0	71	42	14	12	30	1.82
55302191--55302337	74	2.0	74	82	7	183	43	11	9	35	1.74
55302180--55302315	25	5.5	24	72	11	89	42	11	8	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55309172--55309204	17	1.9	17	93	0	57	51	0	0	48	1.00
55312456--55312506	3	17.0	3	100	0	102	66	0	0	33	0.92
55315793--55315891	51	1.9	51	97	0	189	26	8	26	39	1.84
55321097--55321223	39	3.2	39	90	1	182	28	28	19	23	1.98
55333889--55333920	13	2.5	13	100	0	64	37	28	0	34	1.57
55337913--55337964	24	2.2	24	89	0	77	15	53	13	17	1.72
55337921--55338012	24	3.8	24	89	0	94	23	45	15	15	1.84
55337957--55338051	24	4.0	24	97	0	163	33	42	13	10	1.79
55341200--55341242	22	2.0	21	81	4	50	55	4	9	30	1.52
55343468--55343530	20	3.2	20	76	17	69	47	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250