genome.fa.s9.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  18  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5134133--5134181	22	2.3	23	80	16	61	42	16	0	40	1.48
5134316--5134450	48	2.8	45	84	12	164	31	9	5	53	1.56
5136048--5136083	18	2.0	18	94	0	63	30	27	2	38	1.71
5144120--5144291	47	3.7	47	81	13	237	22	19	29	29	1.98
5144170--5144342	46	3.7	46	77	13	201	21	20	27	30	1.98
5144123--5144337	93	2.3	93	95	0	385	21	20	28	29	1.98
5156217--5156276	24	2.4	25	81	13	61	56	6	8	28	1.54
5159697--5160854	144	8.0	144	93	0	1760	31	16	24	28	1.96
5165560--5165973	215	1.9	212	94	1	729	34	19	11	34	1.88
5166310--5166390	33	2.5	33	95	0	144	27	25	20	25	1.99
5169821--5169854	18	1.9	18	94	5	61	55	5	11	26	1.58
5170578--5170627	10	5.0	10	86	13	68	70	2	8	20	1.23
5171796--5171829	13	2.8	12	86	8	50	50	8	11	29	1.69
5172496--5172624	42	3.0	42	79	2	159	30	26	13	29	1.94
5174298--5174362	29	2.2	29	78	5	69	73	1	7	16	1.13
5178479--5179636	144	8.0	144	93	0	1760	31	16	24	28	1.96
5182549--5182639	32	2.9	31	80	9	105	60	2	3	34	1.25
5182595--5182636	12	3.4	12	86	3	57	61	0	2	35	1.09
5182735--5182775	21	2.0	21	85	9	57	60	0	2	36	1.10
5182735--5182962	15	15.4	15	69	21	108	61	2	3	32	1.26
5182851--5182989	22	6.7	21	72	19	87	64	1	3	30	1.20
5182843--5182989	40	3.6	41	71	19	103	64	1	3	30	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5182737--5182951	111	1.9	111	81	14	257	60	2	3	32	1.28
5182827--5182970	41	3.5	39	72	20	107	63	1	4	30	1.21
5182943--5182977	14	2.6	14	91	8	56	65	0	2	31	1.07
5185098--5185145	14	3.4	14	85	0	60	43	6	31	18	1.75
5190348--5190388	12	3.5	12	84	12	50	12	4	4	78	1.07
5190356--5190388	12	2.6	13	90	9	59	15	6	6	72	1.24
5190771--5190818	14	3.4	14	85	0	60	43	6	31	18	1.75
5197954--5198217	144	1.8	144	95	0	483	31	15	25	27	1.96
5202585--5202633	22	2.2	23	82	10	57	55	4	6	34	1.44
5202639--5202680	12	3.3	13	80	12	52	54	2	11	30	1.49
5206241--5206836	108	5.5	108	91	2	901	27	22	8	41	1.83
5206238--5206836	27	22.2	27	85	4	735	27	22	9	40	1.84
5206841--5207011	27	6.3	27	86	0	234	36	18	19	25	1.95
5206863--5207036	27	6.4	27	79	6	97	35	17	19	27	1.94
5207235--5207297	27	2.3	27	86	5	92	17	19	26	36	1.94
5207439--5207590	6	25.0	6	78	15	152	19	15	14	50	1.79
5207439--5207596	55	3.0	53	83	9	202	19	15	14	50	1.79
5209472--5210059	108	5.4	107	89	3	903	27	22	9	40	1.85
5209469--5210059	27	21.9	27	84	5	766	27	22	9	39	1.85
5210071--5210266	27	7.3	27	81	1	214	36	17	18	27	1.94
5210071--5210266	54	3.6	53	84	6	250	36	17	18	27	1.94
5210464--5210550	27	3.3	26	85	4	102	16	20	26	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5210668--5210814	6	24.2	6	75	18	135	19	17	14	47	1.82
5210668--5210795	55	2.3	55	91	2	204	19	17	14	47	1.82
5210696--5210813	24	4.9	24	85	10	152	18	17	15	48	1.82
5220709--5220941	72	3.2	72	82	1	261	30	24	13	30	1.94
5221116--5221394	144	1.9	144	81	5	332	32	17	14	35	1.90
5225610--5225715	46	2.3	43	76	10	113	26	19	16	37	1.92
5225816--5225870	18	2.8	18	77	17	65	27	20	20	32	1.97
5225816--5225871	22	2.8	22	82	15	68	26	21	19	32	1.97
5228140--5228235	38	2.6	38	81	5	115	25	29	23	21	1.99
5229226--5229309	26	3.2	26	87	0	123	33	7	23	35	1.82
5233521--5233571	24	2.1	24	100	0	102	15	27	39	17	1.90
5237322--5237394	25	2.9	26	86	8	107	32	5	26	35	1.79
5244155--5244238	26	3.2	26	88	6	125	33	7	25	34	1.83
5247795--5247919	26	4.9	23	72	21	74	61	0	4	34	1.15
5247792--5247906	7	17.1	7	71	25	81	59	0	4	36	1.18
5247792--5247907	20	5.8	19	79	14	119	59	0	4	36	1.17
5248623--5248853	43	5.4	43	94	0	381	24	32	21	21	1.98
5248942--5248989	20	2.4	21	82	10	64	68	6	2	22	1.23
5254787--5254823	17	2.2	16	95	4	65	21	2	0	75	0.92
5254889--5254972	7	12.0	7	85	9	109	27	1	1	70	1.02
5255590--5255614	10	2.5	10	100	0	50	68	0	0	32	0.90
5256327--5256360	16	2.2	16	89	5	52	14	0	35	50	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5256412--5256653	41	5.9	41	90	0	360	19	25	23	31	1.98
5259004--5259067	32	2.0	32	85	8	87	46	7	0	45	1.32
5259338--5259401	3	19.7	3	76	20	58	59	4	0	35	1.18
5259337--5259375	7	5.9	7	90	6	55	58	2	0	38	1.12
5260982--5261034	26	2.0	27	85	7	74	24	15	22	37	1.92
5262518--5262579	32	1.9	32	100	0	124	40	25	3	30	1.72
5263741--5263805	34	2.0	34	84	6	89	30	26	16	26	1.97
5263581--5263866	137	2.1	136	94	0	500	31	24	18	24	1.98
5264114--5264166	26	2.0	27	82	13	67	24	15	22	37	1.92
5265537--5265589	7	7.3	7	93	6	88	67	1	0	30	1.01
5265533--5265596	7	8.5	8	91	3	73	67	1	1	29	1.09
5265827--5265889	14	4.9	13	68	24	53	61	0	3	34	1.12
5265750--5265947	25	7.8	25	71	12	93	55	4	6	33	1.45
5265834--5265964	45	2.8	46	73	19	117	58	2	4	35	1.31
5266495--5266680	30	6.3	29	91	3	293	22	3	47	26	1.68
5266495--5266680	87	2.1	90	91	3	306	22	3	47	26	1.68
5267428--5267477	14	3.6	14	81	7	57	64	4	12	20	1.43
5267494--5267701	75	2.8	74	85	3	283	31	21	16	30	1.96
5267688--5267715	14	2.0	14	100	0	56	57	7	21	14	1.61
5267703--5268229	145	3.5	149	79	14	529	33	21	16	27	1.95
5267606--5267773	92	1.8	91	88	6	259	35	20	16	27	1.94
5267697--5267920	74	3.0	73	90	1	340	33	22	17	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5267928--5267956	14	2.1	14	100	0	58	65	6	13	13	1.45
5267449--5268157	239	3.0	239	95	0	1231	33	21	17	27	1.95
5267845--5268012	92	1.8	91	89	6	268	34	20	17	27	1.95
5267975--5268229	73	3.5	73	93	1	431	32	21	16	30	1.95
5275908--5275943	12	3.0	12	87	0	54	41	5	27	25	1.77
5275904--5275935	16	1.9	17	93	6	57	40	6	28	25	1.79
5277511--5277552	22	2.0	21	90	4	66	64	0	0	35	0.94
5277511--5277567	8	7.5	8	81	13	59	63	1	1	33	1.15
5277511--5277611	37	2.6	36	75	18	89	65	1	2	29	1.18
5277717--5277781	25	2.8	24	83	6	80	52	6	7	33	1.55
5277731--5277868	25	5.3	27	73	10	92	55	3	7	32	1.46
5278457--5278647	30	6.4	30	90	2	303	21	3	47	26	1.67
5278413--5278647	60	3.9	60	90	2	330	22	3	46	26	1.69
5279518--5279625	26	4.2	26	96	0	198	36	26	7	29	1.84
5281581--5281617	6	5.8	6	87	12	56	78	2	0	18	0.87
5281584--5281610	14	1.9	14	100	0	54	74	3	0	22	0.98
5281558--5281629	20	3.2	22	78	15	67	69	2	0	27	1.02
5281641--5281717	9	8.6	9	83	0	100	28	9	15	46	1.76
5282315--5282867	128	4.4	126	80	3	547	37	20	16	26	1.93
5284833--5284877	17	2.4	18	82	17	56	26	6	11	55	1.59
5284975--5285021	24	2.0	24	83	8	60	27	6	0	65	1.16
5285557--5285593	19	1.9	19	94	0	65	24	0	13	62	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5285731--5285818	21	3.9	23	70	22	62	32	10	4	52	1.56
5286096--5286126	11	2.7	11	95	5	53	38	0	6	54	1.26
5288994--5289103	26	4.2	26	91	4	170	35	4	23	36	1.76
5290150--5290235	27	3.2	26	83	8	109	15	25	22	37	1.93
5294169--5294276	26	4.2	26	92	3	175	34	4	24	37	1.76
5295710--5295784	27	2.8	27	83	2	89	34	21	12	32	1.90
5295886--5296024	27	5.2	27	86	4	174	17	24	23	34	1.96
5295886--5296024	54	2.6	54	88	3	192	17	24	23	34	1.96
5298204--5298245	21	2.0	21	90	0	66	40	2	4	52	1.35
5299647--5299687	20	2.0	21	90	4	66	26	2	4	65	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250