genome.fa.s9.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  147  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47701921--47701946	12	2.2	12	100	0	52	38	15	0	46	1.46
47711208--47711250	20	2.2	20	84	12	54	41	4	6	46	1.51
47718683--47718725	15	2.9	15	85	0	59	53	13	11	20	1.71
47726057--47726531	47	10.1	47	95	1	799	32	9	29	28	1.88
47726057--47726531	187	2.5	188	93	1	799	32	9	29	28	1.88
47726650--47726727	36	2.1	37	90	2	122	25	19	29	25	1.98
47728128--47728175	23	2.1	23	96	0	87	35	12	18	33	1.89
47729786--47730306	47	11.1	47	95	1	893	32	9	29	28	1.88
47729786--47730306	233	2.2	236	93	1	895	32	9	29	28	1.88
47730425--47730503	37	2.1	37	88	4	115	25	18	30	25	1.98
47739122--47739148	10	2.7	10	100	0	54	62	29	7	0	1.22
47740078--47740135	23	2.5	23	85	0	80	37	18	18	24	1.94
47740118--47740203	44	2.0	44	81	4	102	39	18	24	17	1.92
47740119--47740238	22	5.5	22	70	5	91	39	17	25	18	1.92
47740177--47740270	44	2.1	44	82	7	111	42	15	24	17	1.88
47757462--47757634	93	1.9	93	85	2	240	22	20	27	29	1.98
47762219--47762258	20	2.0	21	95	5	73	35	12	2	50	1.54
47763324--47763382	30	1.9	30	82	3	73	47	3	22	27	1.67
47789681--47789799	6	19.3	6	67	17	66	47	14	18	20	1.83
47789702--47789771	19	3.7	19	78	3	88	45	14	20	20	1.85
47789690--47789770	37	2.2	37	86	0	108	48	13	18	19	1.81
47789720--47789799	25	3.2	25	78	5	83	46	15	17	21	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47789917--47790024	27	4.0	26	86	5	144	37	22	23	16	1.93
47789917--47790024	54	2.0	53	90	1	171	37	22	23	16	1.93
47789917--47790042	54	2.4	54	85	4	132	38	21	23	17	1.93
47790183--47790231	22	2.2	22	89	7	73	26	20	28	24	1.99
47790183--47790242	22	2.7	22	84	5	59	31	21	25	21	1.98
47790636--47790716	27	3.0	27	90	0	117	27	22	17	33	1.96
47795143--47795189	24	2.0	23	83	4	58	51	6	31	10	1.62
47805543--47805643	29	3.5	29	89	1	150	26	14	28	29	1.95
47809750--47809897	40	3.7	40	89	1	199	25	28	22	24	1.99
47817888--47818024	40	3.4	40	90	2	186	25	28	21	24	1.99
47824886--47824946	29	2.1	28	87	9	86	36	0	0	63	0.94
47824915--47824952	19	2.0	19	94	0	67	34	0	0	65	0.93
47824980--47825033	11	5.0	11	78	13	58	27	1	3	66	1.19
47825049--47825122	14	5.0	14	72	22	53	29	6	0	63	1.20
47824982--47825120	11	12.7	11	68	23	55	29	5	2	63	1.27
47833019--47833066	25	1.9	25	84	16	64	62	4	0	33	1.14
47843503--47843544	21	2.0	21	100	0	84	42	14	14	28	1.84
47846338--47846404	20	3.3	20	89	0	107	32	13	20	32	1.92
47846454--47846598	25	6.0	24	88	5	177	30	20	22	26	1.98
47846454--47846584	49	2.7	48	88	5	183	31	19	22	26	1.98
47846792--47846851	31	1.9	31	93	0	102	36	16	21	25	1.94
47848769--47848847	37	2.1	37	90	0	122	25	31	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47848966--47849807	47	17.7	47	93	1	1387	29	28	8	32	1.87
47848966--47849807	143	5.9	143	93	2	1376	29	28	8	32	1.87
47849860--47849898	18	2.2	18	86	9	53	38	23	2	35	1.68
47857307--47857410	27	3.8	27	77	11	95	37	21	22	19	1.94
47860310--47860388	37	2.1	37	90	0	122	25	31	18	24	1.98
47860507--47861010	47	10.8	47	92	3	831	29	29	8	32	1.87
47860507--47861010	143	3.6	140	94	2	829	29	29	8	32	1.87
47864132--47864454	41	7.9	41	81	2	346	35	24	15	25	1.94
47864756--47864816	21	2.9	21	75	0	59	52	26	0	21	1.47
47865429--47865458	5	6.0	5	100	0	60	80	0	0	20	0.72
47870084--47870190	46	2.3	47	91	3	180	44	14	0	40	1.46
47870092--47870207	9	13.0	9	71	13	62	44	15	0	39	1.47
47875249--47875277	14	2.1	14	93	6	51	34	0	10	55	1.34
47881905--47882121	108	2.0	108	98	0	416	34	20	16	29	1.94
47887221--47887281	24	2.5	25	82	12	74	34	29	14	21	1.93
47887221--47887376	48	3.3	47	72	7	143	32	27	14	25	1.94
47887320--47887380	24	2.5	24	83	0	77	31	29	14	24	1.95
47893009--47893070	24	2.6	25	82	12	76	33	29	16	20	1.94
47893009--47893165	48	3.3	46	72	8	136	33	26	14	25	1.95
47893109--47893169	24	2.5	24	81	5	70	32	27	14	24	1.95
47908908--47909035	43	3.0	43	90	2	186	49	2	23	25	1.62
47912725--47912833	37	2.9	37	95	0	191	26	31	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47913874--47914550	47	14.2	47	90	4	1052	29	28	8	33	1.87
47913924--47914002	25	3.3	25	66	16	76	31	29	5	34	1.79
47913874--47914550	96	7.1	96	94	1	1150	29	28	8	33	1.87
47917055--47917239	48	3.8	48	90	4	300	30	27	7	35	1.83
47917055--47917238	98	1.9	97	92	4	309	30	27	7	35	1.83
47917217--47917402	47	4.0	47	91	0	282	26	29	11	32	1.91
47917302--47917373	22	3.1	22	64	24	58	23	29	13	33	1.93
47939025--47939554	177	3.0	177	89	0	799	31	17	22	27	1.97
47939410--47939505	45	2.1	45	82	3	113	32	17	22	27	1.97
47939417--47939820	134	3.0	132	76	10	378	31	19	22	27	1.98
47939475--47939904	132	3.2	132	84	5	498	30	20	22	26	1.98
47939120--47940075	309	3.1	307	76	6	987	30	19	22	27	1.98
47939741--47940236	177	2.8	176	85	4	626	30	20	21	27	1.98
47947281--47947329	23	2.1	23	100	0	98	44	16	8	30	1.76
47947288--47947337	23	2.2	23	85	7	66	48	16	10	26	1.77
47947912--47947949	13	3.0	13	96	3	69	39	0	23	36	1.55
47955041--47955100	30	2.0	29	84	9	77	38	6	25	30	1.81
47957818--47957861	22	2.0	22	100	0	88	59	4	9	27	1.48
47959427--47959528	50	2.0	50	80	0	114	42	19	8	29	1.81
47959515--47959633	35	3.4	35	77	4	132	42	18	10	28	1.82
47962121--47962389	47	5.7	47	92	2	409	30	10	31	27	1.90
47962136--47962389	140	1.8	141	90	2	413	31	10	30	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47964833--47964906	38	1.9	38	86	5	105	31	18	25	24	1.98
47964961--47965161	40	5.1	40	85	0	260	23	21	28	25	1.99
47968480--47968727	47	5.3	47	87	5	326	32	10	30	27	1.89
47970120--47970194	38	2.0	38	86	5	107	30	18	26	24	1.98
47970248--47970728	40	12.1	40	92	1	741	24	22	28	25	1.99
47973604--47973748	35	4.1	34	76	6	137	26	12	18	42	1.86
47973716--47973812	50	1.9	50	85	0	131	30	9	20	39	1.84
47973716--47973834	50	2.4	50	79	10	127	30	10	20	39	1.85
47977616--47977709	45	2.1	45	95	0	170	44	15	9	29	1.79
47978441--47978479	19	2.1	19	85	0	51	71	7	5	15	1.26
47978885--47978999	55	2.1	56	83	4	144	33	21	24	20	1.97
47978899--47978999	28	3.6	27	80	9	105	30	21	25	21	1.98
47978910--47978999	28	3.2	28	82	4	110	31	23	24	21	1.98
47979105--47979172	28	2.4	28	95	0	118	32	7	26	33	1.84
47979418--47979447	8	3.8	8	90	0	51	3	23	23	50	1.64
47985913--47986028	57	2.0	57	98	0	223	23	33	14	28	1.94
47993702--47993780	23	3.3	24	78	7	81	34	15	24	26	1.94
47998312--47998344	12	2.8	12	95	0	57	30	48	18	3	1.63
47999526--47999578	20	2.7	20	84	0	70	37	18	9	33	1.83
47999746--47999849	22	4.6	23	70	10	88	40	19	19	21	1.92
47999744--47999802	23	2.6	22	78	5	73	35	20	20	23	1.96
48004768--48004826	31	1.9	31	96	0	109	32	20	22	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48004828--48004896	31	2.2	31	86	0	93	26	21	26	26	2.00
48006317--48006424	26	4.2	26	87	0	171	34	6	25	34	1.81
48013508--48013589	26	3.2	26	92	0	146	31	4	26	36	1.78
48015364--48015652	137	2.1	137	94	0	506	24	19	24	31	1.98
48024800--48024835	18	2.0	18	94	0	63	33	30	11	25	1.90
48029296--48029383	6	14.3	6	72	17	65	48	12	18	20	1.80
48029317--48029383	25	2.7	25	85	0	89	47	11	19	20	1.81
48029497--48029573	27	2.9	26	77	11	93	36	18	23	22	1.95
48030236--48030308	35	2.1	35	89	0	110	26	16	17	39	1.91
48030271--48030708	27	16.2	27	86	0	525	24	19	18	38	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250