genome.fa.s9.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  157  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50496087--50496128	22	1.9	22	90	0	66	59	14	16	9	1.60
50502292--50502449	21	7.6	21	82	5	178	18	21	13	46	1.84
50502292--50502449	42	3.8	42	87	5	223	18	21	13	46	1.84
50502292--50502463	63	2.8	61	82	5	197	18	21	13	46	1.83
50511793--50511833	13	3.2	13	89	6	57	26	0	0	73	0.84
50513040--50513147	51	2.1	51	100	0	216	39	11	22	26	1.87
50513989--50514193	46	4.5	46	87	2	295	40	12	22	23	1.88
50514157--50514221	30	2.2	30	88	5	96	44	18	21	15	1.86
50515691--50515798	26	4.2	26	93	0	189	32	7	24	36	1.83
50520482--50520514	13	2.6	13	90	4	50	48	12	0	39	1.40
50523431--50523487	5	11.4	5	75	14	55	75	0	5	19	0.99
50523441--50523487	19	2.4	18	86	10	58	78	0	4	17	0.90
50523429--50523487	24	2.3	26	88	5	86	74	0	5	20	1.00
50523431--50523487	14	3.8	15	79	11	55	75	0	5	19	0.99
50528846--50528878	13	2.6	13	90	4	50	48	12	0	39	1.40
50538872--50538975	21	5.2	20	68	13	81	12	27	23	36	1.91
50538854--50538977	39	3.2	39	96	0	221	12	26	24	36	1.92
50540301--50540491	31	5.8	31	70	19	127	30	18	26	24	1.98
50540312--50540469	38	4.7	33	75	15	137	30	20	25	24	1.98
50541990--50542030	17	2.4	17	100	0	82	46	9	12	31	1.74
50543873--50543937	21	3.2	21	70	12	73	9	27	24	38	1.86
50543855--50543978	39	3.2	39	95	0	212	12	25	25	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50579960--50580006	24	2.0	24	91	0	76	51	17	8	23	1.72
50580410--50580466	27	2.1	27	83	0	69	26	15	40	17	1.90
50580680--50580726	25	1.9	24	82	4	58	23	2	10	63	1.37
50580779--50580830	27	1.9	27	88	0	77	50	1	7	40	1.42
50583618--50583774	64	2.5	64	94	1	271	42	5	7	44	1.57
50584180--50584243	33	1.9	33	90	0	101	21	9	40	28	1.84
50586098--50586315	107	2.0	112	87	8	320	54	8	4	32	1.50
50586954--50586993	20	2.0	20	85	9	55	0	40	0	60	0.97
50587661--50587715	20	2.8	20	84	13	69	27	0	1	70	0.97
50588236--50588268	15	2.2	16	89	10	52	6	18	0	75	1.00
50600284--50600317	9	3.8	9	88	0	50	44	11	11	32	1.77
50604296--50604350	27	2.0	27	100	0	110	25	27	7	40	1.82
50604963--50605197	116	2.0	117	95	0	427	36	14	17	31	1.90
50607682--50607740	30	2.0	30	96	0	109	25	5	11	57	1.54
50615036--50615072	19	1.9	19	94	0	65	40	10	16	32	1.83
50620216--50620264	7	6.9	7	84	11	64	85	0	14	0	0.59
50620214--50620264	21	2.4	21	90	3	75	84	0	15	0	0.63
50621234--50621796	44	12.9	43	70	13	280	27	15	27	29	1.96
50621217--50621973	87	8.8	86	75	11	624	28	15	26	29	1.96
50621322--50622028	253	2.8	257	86	3	980	28	15	25	30	1.96
50621919--50622028	44	2.5	44	77	1	114	31	13	23	30	1.93
50622192--50622454	44	5.9	43	73	11	203	30	17	25	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50622098--50622407	134	2.3	135	85	2	399	31	18	23	26	1.97
50622199--50622407	46	4.6	45	75	12	178	31	17	24	25	1.97
50622236--50622450	90	2.4	90	89	4	337	30	18	24	26	1.98
50622899--50622989	19	4.9	19	90	8	152	38	10	15	35	1.83
50622907--50622996	35	2.5	37	87	10	134	38	11	15	34	1.83
50624974--50625033	19	3.1	19	73	4	57	26	0	5	68	1.10
50624987--50625027	9	4.6	9	85	14	50	26	0	2	70	0.99
50627764--50627806	18	2.4	18	85	11	54	69	0	11	18	1.17
50631322--50631357	18	2.0	18	89	10	56	55	0	8	36	1.30
50632214--50632256	17	2.4	19	84	7	54	51	2	2	44	1.27
50636354--50636394	6	6.5	6	89	10	64	82	0	0	17	0.66
50636354--50636395	13	3.2	13	87	12	68	83	0	0	16	0.65
50636354--50636395	20	2.2	19	95	4	75	83	0	0	16	0.65
50636441--50636472	9	3.6	9	91	0	55	37	9	6	46	1.61
50645246--50645289	6	7.3	6	92	0	61	61	4	15	18	1.50
50656112--50656356	44	5.6	44	78	5	239	29	22	19	27	1.98
50656196--50656356	88	1.8	87	91	1	268	30	22	19	27	1.98
50660455--50660494	21	1.9	21	94	0	71	47	12	10	30	1.74
50662773--50662812	21	2.0	20	85	5	53	62	17	7	12	1.52
50662561--50663079	133	3.9	133	97	0	975	51	17	9	21	1.73
50662906--50662945	21	2.0	20	85	5	53	62	17	7	12	1.52
50665830--50665876	12	4.0	11	81	13	58	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50665865--50665896	15	2.1	15	94	0	55	31	9	0	59	1.29
50666752--50666784	14	2.4	14	90	10	50	45	21	0	33	1.52
50666947--50667069	41	3.0	41	85	3	151	16	21	21	39	1.92
50671682--50671715	17	1.9	18	94	5	61	44	0	26	29	1.55
50673287--50673340	27	2.0	27	100	0	108	29	7	14	48	1.71
50673777--50673830	6	9.0	6	91	0	63	14	24	1	59	1.46
50673769--50673830	12	5.1	12	86	2	70	14	25	1	58	1.46
50673777--50673830	18	3.0	18	83	0	72	14	24	1	59	1.46
50676498--50676548	20	2.5	22	81	18	65	39	7	5	47	1.57
50682153--50682190	12	3.1	12	82	17	51	68	0	0	31	0.90
50682522--50682628	7	15.7	7	68	20	50	57	0	4	38	1.20
50682560--50682624	21	3.1	21	78	8	62	61	0	4	33	1.16
50682562--50682622	28	2.2	29	77	19	67	59	0	4	36	1.19
50682644--50682677	12	2.9	12	95	4	61	61	0	0	38	0.96
50682978--50683138	17	8.9	18	85	5	211	36	14	11	38	1.82
50682978--50683130	35	4.3	35	93	2	252	35	13	11	38	1.82
50684468--50684534	33	2.0	33	100	0	134	31	8	20	38	1.84
50684797--50685011	116	1.9	116	83	2	279	40	16	15	28	1.89
50695659--50695740	41	2.0	41	97	0	155	39	13	21	25	1.90
50695912--50695942	15	2.1	15	100	0	62	38	6	32	22	1.80
50696099--50696137	18	2.3	17	86	8	53	38	5	12	43	1.65
50696879--50696908	15	2.0	15	93	0	51	23	6	46	23	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50700269--50700299	15	2.1	15	100	0	62	38	6	32	22	1.80
50700456--50700494	18	2.3	17	86	8	53	38	5	12	43	1.65
50702529--50702571	21	2.0	22	86	13	63	55	2	0	41	1.12
50705715--50705806	36	2.6	36	78	3	105	44	25	8	21	1.80
50710752--50710780	12	2.3	13	94	5	51	27	0	3	68	1.05
50715167--50715209	21	2.0	22	86	13	63	55	2	0	41	1.12
50717824--50717903	23	3.7	23	75	13	96	36	22	5	36	1.76
50717825--50717913	42	2.1	42	97	2	171	34	23	4	37	1.75
50717848--50717913	19	3.3	19	71	17	62	34	24	4	36	1.76
50718375--50718495	36	3.4	36	78	10	122	42	27	12	18	1.86
50722297--50722355	24	2.5	24	88	0	82	35	23	15	25	1.94
50724328--50724382	27	2.1	27	93	3	94	38	9	1	50	1.45
50724318--50724385	13	5.2	13	80	7	75	41	11	1	45	1.50
50727580--50727617	13	2.9	14	84	7	53	13	15	15	55	1.70
50729885--50730044	38	4.2	38	87	4	205	20	21	26	31	1.98
50729856--50730043	76	2.4	78	83	5	229	22	22	25	29	1.99
50731662--50731857	94	2.1	94	92	1	322	36	22	14	26	1.92
50734014--50734055	20	2.1	20	86	8	59	38	2	0	59	1.10
50735988--50736017	6	5.0	6	100	0	60	16	66	0	16	1.25
50735988--50736023	18	2.0	18	88	0	54	19	61	0	19	1.35
50741416--50741525	55	2.0	55	96	0	202	36	17	9	37	1.81
50745247--50745276	12	2.4	13	88	11	53	26	0	6	66	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50747493--50747520	14	2.0	14	100	0	56	28	14	7	50	1.69
50749866--50749934	31	2.2	31	81	0	75	33	13	10	43	1.77
50751041--50751093	24	2.2	24	83	6	63	41	7	5	45	1.56
50754285--50754332	22	2.2	22	85	7	62	70	4	2	22	1.15
50755081--50755125	23	1.9	24	86	4	65	22	4	4	68	1.25
50764212--50764251	21	1.9	21	94	0	71	52	0	0	47	1.00
50768383--50768450	20	3.4	20	76	10	59	19	5	4	70	1.25
50773040--50773079	21	1.9	21	89	0	62	12	22	12	52	1.72
50777161--50777240	39	2.1	39	92	0	133	33	15	20	31	1.93
50777207--50777391	94	2.0	93	88	1	271	35	12	20	31	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250