genome.fa.s9.2.7.7.80.10.50.1000.204.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  204  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63516957--63516986	12	2.4	13	88	11	53	6	0	6	86	0.70
63520526--63520562	18	2.0	19	89	5	58	51	10	5	32	1.60
63525801--63525878	39	2.0	39	100	0	156	35	10	23	30	1.88
63531045--63531069	12	2.1	12	100	0	50	44	0	8	48	1.32
63533471--63533534	24	2.5	25	80	7	67	29	4	4	60	1.37
63537020--63537128	26	4.2	26	91	0	182	34	23	8	33	1.85
63540474--63540498	8	3.1	8	100	0	50	76	0	0	24	0.80
63548094--63548313	3	74.7	3	73	8	132	64	2	6	26	1.32
63548477--63548506	16	1.9	15	93	6	51	73	6	3	16	1.18
63548554--63548594	21	1.9	22	85	14	59	51	0	19	29	1.47
63550377--63550484	44	2.4	44	81	3	126	31	22	12	34	1.90
63552239--63552280	22	2.0	22	85	4	59	14	7	40	38	1.73
63552296--63552385	31	2.9	31	93	0	144	14	1	38	45	1.52
63552992--63553153	75	2.1	75	85	2	225	35	19	16	29	1.94
63553154--63553347	64	3.0	64	88	1	264	32	22	19	25	1.97
63559162--63559285	53	2.4	53	89	4	180	29	29	16	25	1.97
63566651--63566774	53	2.4	53	89	4	180	29	29	16	25	1.97
63575588--63575809	3	74.7	3	65	11	73	61	3	8	26	1.42
63577214--63577276	31	2.0	31	87	0	90	14	1	38	46	1.54
63579196--63579248	25	2.1	25	82	0	61	50	5	24	18	1.68
63586626--63586692	25	2.7	25	77	17	77	31	2	7	58	1.41
63588202--63588388	99	1.9	99	93	0	320	21	20	14	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63596186--63596261	21	3.6	21	92	0	125	30	36	9	23	1.86
63600635--63600675	21	2.0	21	90	0	64	29	21	29	19	1.98
63602597--63602627	16	1.9	16	93	0	53	41	12	16	29	1.85
63605435--63605702	46	5.8	46	90	0	358	40	14	23	21	1.90
63611778--63611833	22	2.5	22	75	11	69	53	0	10	35	1.36
63612469--63612518	26	2.0	24	88	7	73	64	6	0	30	1.18
63612593--63612625	15	2.1	16	88	11	50	69	0	0	30	0.88
63612650--63612681	5	6.2	5	92	7	55	0	43	56	0	0.99
63614479--63614743	140	1.9	141	98	0	514	34	21	18	25	1.96
63625609--63625731	44	2.9	43	80	7	142	25	17	26	30	1.97
63634459--63634514	17	3.3	17	70	9	51	44	10	3	41	1.56
63634867--63634926	10	6.0	10	75	14	61	61	6	0	31	1.22
63634869--63634954	20	4.3	20	88	5	122	59	3	1	36	1.22
63648337--63648362	10	2.6	10	100	0	52	42	57	0	0	0.98
63651906--63652035	25	5.2	25	84	2	140	20	26	20	31	1.98
63652968--63652994	12	2.2	12	100	0	54	40	0	7	51	1.30
63655767--63655819	20	2.8	17	80	11	52	37	3	1	56	1.28
63656324--63656351	14	2.0	14	100	0	56	35	14	0	50	1.43
63656642--63656713	26	2.8	25	78	17	76	34	2	5	56	1.37
63656686--63656730	21	2.2	20	88	4	63	35	2	8	53	1.45
63656670--63656725	23	2.4	24	81	3	69	33	3	7	55	1.45
63656999--63657030	11	2.9	11	90	0	55	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63658716--63658807	3	31.0	3	76	10	82	66	1	6	26	1.23
63658700--63658765	26	2.4	26	82	7	69	71	0	7	21	1.11
63659120--63659165	5	8.6	5	83	11	56	39	0	2	58	1.10
63659107--63659166	10	6.6	9	73	21	54	43	0	1	55	1.10
63659108--63659166	12	4.5	12	80	15	64	42	0	1	55	1.09
63660476--63660514	18	2.1	19	90	4	62	41	0	10	48	1.37
63660754--63660888	39	3.4	39	74	6	112	23	20	28	28	1.99
63661011--63661051	19	2.2	19	87	12	59	46	0	24	29	1.53
63661764--63661854	3	30.0	3	77	2	92	60	0	8	30	1.27
63662551--63662585	12	3.0	12	87	4	54	2	17	0	80	0.84
63662552--63662589	12	3.2	12	81	7	51	2	18	0	78	0.86
63674183--63674210	5	5.6	5	100	0	56	17	0	0	82	0.68
63679916--63679943	5	5.6	5	100	0	56	17	0	0	82	0.68
63681339--63681379	21	1.9	22	90	5	66	65	2	7	24	1.30
63687103--63687157	16	3.4	17	74	20	55	58	1	3	36	1.26
63687167--63687197	13	2.3	14	94	5	55	51	6	0	41	1.27
63687243--63687343	3	34.3	3	69	21	63	63	1	4	29	1.26
63689138--63689180	22	1.9	22	85	4	59	25	2	0	72	0.97
63689134--63689192	23	2.6	23	72	8	57	32	1	0	66	1.02
63704531--63704603	28	2.8	25	74	18	69	57	1	0	41	1.07
63705034--63705064	2	15.5	2	100	0	62	48	0	0	51	1.00
63705565--63705615	23	2.2	23	85	3	66	31	0	1	66	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63706574--63706630	22	2.7	21	82	15	57	47	1	1	49	1.22
63706856--63706897	21	2.0	22	85	4	59	38	0	4	57	1.20
63711065--63711110	24	1.9	24	86	8	67	39	21	23	15	1.92
63717756--63717794	19	1.9	19	90	10	60	56	0	0	43	0.99
63717754--63717806	27	2.0	27	85	7	72	56	0	0	43	0.99
63717755--63717808	21	2.6	21	80	17	67	55	0	0	44	0.99
63721239--63721309	12	5.8	12	73	12	63	32	8	4	54	1.50
63721198--63721289	3	30.7	3	73	4	78	29	6	5	58	1.46
63722258--63722386	24	5.4	24	74	17	99	58	4	5	31	1.41
63722299--63722437	44	3.0	46	77	7	129	59	5	5	28	1.44
63722467--63722511	24	1.9	23	81	4	54	62	2	2	33	1.20
63724547--63724593	23	2.1	22	88	4	67	14	8	2	74	1.15
63726371--63726617	87	2.8	87	82	6	291	40	6	15	37	1.74
63730496--63730559	20	3.2	20	77	4	65	48	9	12	29	1.72
63730508--63730547	21	1.9	21	89	0	62	45	5	15	35	1.68
63731696--63731762	23	2.7	26	76	21	72	50	0	0	49	1.00
63731810--63731852	20	2.1	21	83	12	54	44	2	2	51	1.27
63750612--63750643	6	5.2	6	96	3	55	0	62	0	37	0.95
63753971--63754013	22	2.0	22	85	0	59	11	13	4	69	1.33
63755280--63755341	30	2.1	30	90	0	97	30	3	9	56	1.47
63755681--63755741	29	2.1	30	90	3	97	24	4	13	57	1.56
63755825--63755864	18	2.1	18	86	9	53	25	0	10	65	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63761660--63761708	24	2.0	24	100	0	98	36	8	0	55	1.30
63764279--63764351	36	2.0	36	100	0	146	21	13	23	41	1.89
63774510--63774614	54	1.9	54	86	3	149	23	38	16	21	1.93
63775588--63775621	18	2.0	17	88	11	52	47	2	11	38	1.55
63778896--63778933	17	2.2	18	81	13	53	50	10	5	34	1.59
63779792--63779834	22	2.0	22	85	0	59	55	9	11	23	1.64
63780487--63780542	26	2.2	26	83	6	69	33	3	1	60	1.24
63781043--63781085	22	2.0	22	90	9	70	60	0	0	39	0.97
63789802--63789853	16	3.2	16	88	0	77	30	0	34	34	1.58
63790069--63790110	15	2.7	16	82	14	52	52	2	0	45	1.13
63790078--63790119	15	2.9	15	82	10	52	52	0	0	47	1.00
63790106--63790275	37	4.7	35	68	20	109	48	5	1	44	1.35
63790067--63790277	107	2.0	108	96	0	388	49	4	1	44	1.32
63791077--63791103	13	2.1	13	100	0	54	22	0	29	48	1.51
63795587--63795629	21	2.0	23	86	9	63	60	2	0	37	1.10
63799647--63799706	29	2.1	29	84	6	77	36	21	6	35	1.80
63803417--63803490	20	3.8	20	66	10	55	39	9	6	44	1.63
63803888--63803916	14	2.0	15	93	6	51	65	6	0	27	1.18
63818171--63818218	21	2.3	21	82	10	62	41	18	14	25	1.88
63831537--63831565	8	3.6	8	100	0	58	37	0	0	62	0.96
63831588--63831628	5	8.4	5	94	5	75	41	0	0	58	0.98
63832891--63832947	15	3.9	15	88	2	89	35	0	12	52	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63833341--63833406	21	3.1	21	86	0	87	15	22	25	36	1.93
63837125--63837157	17	2.0	17	94	5	59	36	15	0	48	1.45
63837453--63837711	46	5.6	46	92	0	376	20	24	13	40	1.89
63837453--63837715	92	2.9	92	91	0	418	20	24	13	40	1.89
63841789--63842084	18	16.1	18	72	9	159	37	15	12	34	1.85
63841883--63842084	72	2.8	71	79	5	210	37	16	12	34	1.86
63843798--63843843	7	6.9	7	79	16	53	0	28	0	71	0.86
63843798--63843844	20	2.4	19	89	7	67	0	27	0	72	0.85
63843802--63843845	19	2.3	18	85	11	61	0	29	0	70	0.88
63845603--63845638	12	2.9	12	91	4	54	75	2	16	5	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250