genome.fa.s9.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  110  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35283635--35283692	30	2.0	30	89	3	91	31	8	29	31	1.87
35284042--35284253	47	4.5	47	75	12	170	28	18	30	22	1.97
35284036--35284253	94	2.3	95	79	8	241	27	18	30	22	1.97
35284091--35284257	47	3.6	47	78	13	173	27	17	31	22	1.97
35290086--35290254	48	3.6	46	79	6	178	28	19	27	23	1.98
35290275--35290405	49	2.7	48	87	3	181	28	21	29	21	1.98
35291388--35291437	26	1.9	26	91	0	82	40	24	20	16	1.91
35297533--35297578	19	2.4	19	96	0	83	15	2	8	73	1.16
35297883--35297935	26	2.1	25	82	3	61	33	35	5	24	1.79
35302052--35302506	96	4.7	95	78	8	436	26	17	29	26	1.98
35302106--35302487	144	2.6	144	83	1	487	26	18	29	26	1.98
35311769--35312070	47	6.4	45	73	13	200	27	19	29	24	1.98
35311753--35312070	94	3.4	93	81	9	344	27	19	29	23	1.98
35312878--35312990	55	2.1	55	81	6	131	23	26	26	23	2.00
35313540--35313669	69	1.9	70	81	1	163	36	19	24	19	1.94
35320886--35320969	35	2.4	35	93	2	141	15	11	28	44	1.82
35321771--35321812	20	2.1	20	95	0	75	54	9	7	28	1.59
35324829--35325141	46	6.7	49	70	12	142	23	27	19	28	1.99
35324832--35325093	141	1.9	138	83	5	339	24	27	19	27	1.99
35324978--35325146	92	1.8	92	83	7	225	22	27	18	30	1.98
35325862--35325920	29	2.0	29	96	0	109	49	16	6	27	1.71
35331432--35331460	14	2.1	14	100	0	58	31	34	13	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35338602--35338629	10	2.8	10	100	0	56	71	10	0	17	1.14
35344212--35344467	47	5.5	46	70	15	159	27	19	29	23	1.98
35345868--35346001	68	2.0	69	87	1	198	33	16	27	22	1.95
35353647--35353730	35	2.4	35	93	2	141	15	11	28	44	1.82
35354535--35354576	20	2.1	20	95	0	75	54	9	7	28	1.59
35357564--35357622	29	2.0	29	93	0	100	47	18	6	27	1.74
35364888--35364923	2	18.0	2	94	0	63	0	2	50	47	1.15
35366912--35367038	45	2.8	45	95	2	220	39	13	25	22	1.90
35366951--35367020	21	3.2	21	62	18	52	40	11	24	24	1.88
35366912--35367086	45	3.9	45	87	5	187	38	14	24	22	1.91
35367095--35367310	68	3.1	69	80	4	247	32	15	28	23	1.95
35367115--35367299	69	2.7	70	82	2	214	33	14	27	24	1.94
35367331--35367476	54	2.6	54	78	3	157	43	11	20	23	1.85
35371173--35371800	47	13.1	47	88	4	896	30	12	30	26	1.93
35371195--35371800	145	4.2	144	90	4	918	30	13	30	26	1.93
35371486--35371561	24	3.2	24	62	23	61	28	13	32	25	1.93
35371610--35371684	23	3.2	23	62	23	57	29	10	32	28	1.90
35372009--35372153	37	3.9	37	92	0	236	24	17	31	26	1.97
35375840--35375939	29	3.5	29	88	2	148	29	13	27	31	1.93
35375844--35375952	57	1.9	57	86	3	157	26	13	30	29	1.94
35400395--35400565	46	3.7	46	79	13	167	26	18	29	24	1.98
35407246--35407271	13	2.0	13	100	0	52	38	7	23	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35408775--35408806	10	3.1	11	86	13	50	78	0	0	21	0.76
35409062--35409130	19	3.3	20	72	18	52	57	2	7	31	1.40
35409071--35409181	7	14.9	7	67	22	57	56	0	6	36	1.31
35409071--35409181	10	10.6	10	69	23	61	56	0	6	36	1.31
35409096--35409181	30	2.9	30	77	14	83	58	0	4	37	1.19
35410784--35411300	44	11.8	44	88	2	700	27	27	15	29	1.96
35414519--35414743	40	5.7	40	83	5	269	25	21	27	25	1.99
35414593--35414766	80	2.2	79	84	6	219	27	21	27	24	1.99
35424568--35424785	40	5.5	40	88	2	307	25	23	26	25	2.00
35429533--35429570	16	2.4	16	86	4	51	68	5	0	26	1.11
35429867--35429948	12	6.2	12	72	22	58	58	0	4	36	1.20
35429878--35429946	25	2.8	25	80	6	77	57	0	5	36	1.22
35432259--35432531	46	5.9	47	76	5	227	22	30	19	27	1.98
35432259--35432523	140	1.9	140	82	4	338	21	30	19	28	1.98
35437179--35437307	47	2.6	49	79	9	145	33	23	18	24	1.97
35439372--35439421	17	2.9	17	84	0	55	38	8	16	38	1.78
35445971--35445995	3	8.3	3	100	0	50	68	0	0	32	0.90
35450035--35450169	69	1.9	71	83	5	177	29	9	17	42	1.81
35454707--35455108	45	8.9	45	88	0	572	28	29	19	22	1.98
35468325--35468548	91	2.5	91	84	2	281	40	15	10	33	1.82
35469715--35469915	99	2.0	99	95	0	357	40	14	21	23	1.90
35472722--35472817	27	3.6	27	94	0	156	23	25	28	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35472895--35472932	9	4.2	9	83	12	51	73	0	26	0	0.83
35472895--35472932	18	2.1	19	95	5	69	73	0	26	0	0.83
35475484--35475639	64	2.5	64	92	2	253	41	5	7	45	1.57
35476007--35476168	33	4.9	32	71	8	128	22	16	39	20	1.92
35476007--35476168	66	2.5	66	84	2	218	22	16	39	20	1.92
35478210--35478426	110	2.0	110	89	1	337	56	7	4	32	1.46
35478543--35478578	17	2.1	17	89	0	54	69	2	2	25	1.15
35481452--35481553	42	2.4	41	90	6	159	24	26	22	26	2.00
35481886--35481974	36	2.5	36	94	1	153	48	25	3	22	1.66
35486794--35486908	49	2.3	49	82	2	133	38	21	18	21	1.94
35503105--35503227	43	2.9	43	81	4	124	27	16	25	30	1.96
35503902--35504283	190	2.0	190	95	0	692	33	24	12	29	1.92
35517458--35517895	217	2.0	217	98	0	849	32	18	18	31	1.95
35521559--35521588	10	2.9	10	95	5	51	73	10	0	16	1.09
35533142--35533174	14	2.5	13	90	9	57	12	15	12	60	1.59
35535271--35535304	14	2.5	13	86	9	50	67	11	2	17	1.34
35560469--35560528	29	2.1	29	81	9	70	46	1	25	26	1.62
35564959--35565004	23	2.0	23	88	12	69	47	13	8	30	1.72
35570031--35570252	40	5.6	40	82	6	202	25	21	27	25	1.99
35570111--35570287	78	2.2	80	81	4	191	25	22	28	24	1.99
35577948--35578170	40	5.6	40	82	5	202	25	21	28	25	1.99
35578028--35578205	79	2.2	80	81	5	193	25	21	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35589480--35589509	14	2.1	15	93	6	53	13	10	13	63	1.52
35599000--35599099	47	2.1	47	96	0	182	36	10	28	26	1.88
35599000--35599139	47	3.0	47	85	4	158	33	10	30	25	1.90
35599127--35599295	46	3.7	46	94	0	275	34	8	32	24	1.85
35608771--35608807	16	2.3	16	85	0	56	45	18	24	10	1.81
35609984--35610102	29	4.2	29	77	6	118	28	29	13	28	1.94
35612672--35612698	9	3.0	9	100	0	54	22	55	22	0	1.44
35614496--35614594	29	3.5	28	69	14	85	25	31	16	27	1.96
35615991--35616033	19	2.3	18	81	14	52	18	4	16	60	1.52
35621905--35622061	27	5.8	27	87	0	206	31	23	6	38	1.80
35621892--35622195	54	5.6	54	79	3	227	36	22	7	33	1.82
35621892--35622263	27	13.7	27	78	6	198	37	21	7	33	1.81
35621892--35622090	81	2.5	81	83	0	254	34	22	7	36	1.81
35622054--35622289	54	4.4	54	77	10	214	41	20	7	30	1.80
35622299--35622401	27	3.9	27	74	12	81	37	19	19	23	1.94
35622736--35622771	17	2.1	17	100	0	72	11	27	27	33	1.91
35623110--35623196	20	4.3	20	92	2	140	40	10	18	31	1.84
35623246--35623376	52	2.6	51	87	4	187	29	22	22	26	1.99
35623246--35623381	26	5.3	26	81	3	154	28	22	22	26	1.99
35623514--35623605	42	2.2	42	90	0	139	31	14	18	35	1.90
35623629--35623707	31	2.5	31	97	0	149	26	18	27	26	1.98
35635774--35635872	28	3.5	28	68	15	87	28	16	26	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35635774--35635909	56	2.4	56	92	2	218	26	14	28	30	1.95
35635802--35635897	28	3.4	28	70	16	90	22	14	33	29	1.94
35636345--35636567	111	2.0	111	100	0	446	34	12	15	37	1.85
35642716--35643245	47	11.3	47	91	0	855	33	8	29	28	1.87
35647643--35647818	46	3.8	46	79	12	216	20	21	29	28	1.98
35647640--35647811	93	1.8	93	96	0	317	20	21	29	27	1.98
35655214--35655389	46	3.8	46	79	12	216	20	21	29	28	1.98
35655211--35655382	93	1.8	93	96	0	317	20	21	29	27	1.98
35664174--35664366	49	3.9	48	81	6	208	24	19	28	27	1.98
35667366--35667421	15	3.7	15	79	15	71	10	14	12	62	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250