genome.fa.s9.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  120  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38664056--38664097	13	3.2	13	96	0	75	9	23	45	21	1.81
38665356--38665463	29	3.8	28	85	7	128	26	15	29	27	1.96
38668266--38668322	25	2.3	24	82	8	62	75	1	19	3	1.04
38669620--38669751	40	3.3	40	82	3	169	25	21	28	24	1.99
38669620--38669774	79	2.0	79	83	7	199	26	21	27	24	1.99
38669568--38669758	40	4.8	40	76	8	158	26	22	27	24	2.00
38676277--38676315	11	3.8	10	84	15	53	79	0	17	2	0.84
38677551--38677732	39	4.7	40	83	8	207	24	21	28	25	1.99
38677603--38677765	78	2.1	78	82	6	197	25	20	28	25	1.99
38694744--38694794	13	4.1	12	77	7	57	76	0	19	3	0.94
38694735--38694792	25	2.3	25	85	5	73	75	0	18	5	0.98
38696029--38696211	79	2.3	81	83	7	223	24	22	27	24	2.00
38696030--38696213	40	4.6	40	82	9	207	24	22	28	24	2.00
38696082--38696246	79	2.1	79	83	6	201	26	21	27	24	1.99
38701063--38701224	42	3.9	42	84	6	229	31	14	25	28	1.95
38704154--38704298	43	3.4	43	89	2	211	31	13	21	34	1.91
38705410--38705460	3	17.3	3	85	4	50	37	1	5	54	1.36
38706623--38706669	15	3.3	14	75	16	51	34	0	4	61	1.15
38719994--38720110	42	2.8	41	77	10	119	27	27	20	24	1.99
38726463--38726544	41	2.0	41	95	4	148	19	18	20	41	1.91
38726673--38726898	36	6.3	36	86	1	292	45	2	11	41	1.52
38727225--38727297	18	4.4	16	75	11	58	30	1	0	68	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38727225--38727284	18	3.5	17	84	9	68	35	1	0	63	1.05
38727277--38727317	7	5.9	7	100	0	82	14	0	0	85	0.60
38728870--38728923	23	2.3	23	96	0	99	18	3	46	31	1.67
38732927--38733099	46	3.7	46	77	10	181	22	19	28	30	1.98
38732920--38733092	93	1.9	93	88	0	265	22	20	27	29	1.98
38735561--38735663	46	2.2	48	89	3	156	35	14	24	25	1.93
38736920--38736963	23	1.9	23	85	0	61	15	15	43	25	1.87
38737820--38737964	57	2.5	57	88	4	195	31	28	13	26	1.94
38737820--38737964	29	5.1	29	88	4	206	31	28	13	26	1.94
38738179--38738213	16	2.2	16	89	0	52	8	20	22	48	1.76
38738912--38738991	40	2.0	40	100	0	160	47	22	20	10	1.79
38745010--38745058	25	2.0	25	88	4	73	71	2	14	12	1.23
38745597--38745661	25	2.6	25	83	9	71	63	1	1	33	1.13
38748332--38748384	27	2.0	27	85	3	72	28	11	20	39	1.87
38750118--38750237	40	3.0	40	92	0	204	27	28	20	24	1.99
38757528--38757680	40	3.8	39	95	1	261	26	28	21	24	1.99
38760319--38760361	19	2.4	19	88	7	63	27	13	27	30	1.95
38760327--38760364	19	2.0	19	100	0	76	26	15	31	26	1.96
38762320--38762475	40	3.9	40	93	0	251	19	22	31	26	1.98
38762755--38762865	57	1.9	58	85	1	152	22	16	29	31	1.96
38765250--38765302	27	2.0	27	85	3	72	28	11	20	39	1.87
38766612--38766654	19	2.4	19	88	7	63	27	13	27	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38766620--38766657	19	2.0	19	100	0	76	26	15	31	26	1.96
38772105--38772133	15	1.9	15	100	0	58	37	0	13	48	1.43
38777626--38777655	11	2.7	11	89	0	51	43	6	0	50	1.28
38778705--38778729	12	2.1	12	100	0	50	8	8	32	52	1.60
38778776--38779107	41	8.1	41	87	2	407	33	21	20	24	1.97
38779393--38779453	7	8.6	7	78	3	59	44	39	0	16	1.48
38779636--38779676	21	2.0	21	85	9	57	12	0	31	56	1.36
38779687--38779733	22	2.2	21	84	3	58	12	2	34	51	1.52
38779687--38779757	7	9.7	7	72	14	54	15	1	36	46	1.55
38782570--38782686	9	13.0	9	79	12	107	46	18	0	35	1.50
38782553--38782688	47	2.8	44	79	18	139	44	17	0	36	1.54
38782555--38782634	38	2.0	40	90	4	128	42	18	1	37	1.59
38782570--38782686	56	2.2	52	85	11	148	46	18	0	35	1.50
38788523--38788714	43	4.5	43	78	3	190	26	17	23	32	1.97
38788509--38788715	86	2.4	86	80	4	222	27	17	23	31	1.97
38788491--38788751	43	6.1	42	73	7	188	27	17	21	34	1.95
38788523--38788762	129	1.9	128	81	7	299	26	16	22	35	1.95
38802537--38802709	89	1.9	89	96	2	321	43	20	3	32	1.68
38803339--38803481	43	3.3	42	81	9	180	32	16	16	33	1.92
38809855--38809991	43	3.2	43	87	0	184	32	16	16	35	1.91
38811410--38811435	13	2.0	13	100	0	52	15	7	30	46	1.74
38821751--38821810	24	2.5	24	83	5	68	36	30	15	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38833144--38833195	25	2.1	25	85	7	70	28	21	19	30	1.97
38833234--38833292	10	5.8	10	94	4	82	37	18	13	30	1.90
38833238--38833292	21	2.7	21	91	2	53	36	18	14	30	1.91
38833335--38833403	25	2.8	25	86	0	93	28	26	20	24	1.99
38833346--38833416	25	2.9	25	80	14	76	30	25	18	25	1.98
38834989--38835049	30	2.0	30	87	6	88	39	6	24	29	1.80
38843906--38843964	10	5.8	10	94	4	82	37	18	13	30	1.90
38843910--38843964	21	2.7	21	91	2	53	36	18	14	30	1.91
38844009--38844077	25	2.8	25	91	4	104	26	24	24	24	2.00
38844009--38844104	25	3.9	24	82	10	81	28	22	23	25	2.00
38844298--38844376	31	2.5	31	95	0	140	29	17	29	24	1.97
38847454--38847566	43	2.6	42	83	8	122	26	14	27	31	1.94
38852212--38852873	27	24.6	27	85	3	814	37	18	17	26	1.93
38853174--38853226	20	2.6	20	78	3	70	11	16	32	39	1.85
38853454--38853559	27	4.0	26	83	8	117	19	22	21	35	1.96
38853677--38853761	6	13.8	6	74	14	75	18	17	12	50	1.77
38853695--38853756	19	3.7	18	70	28	55	17	19	14	48	1.81
38853680--38853761	31	2.6	31	88	0	119	18	18	13	50	1.79
38859216--38859255	20	2.0	20	95	0	71	25	17	30	27	1.97
38867398--38867564	39	4.3	39	91	0	262	21	26	20	31	1.98
38870206--38870330	47	2.7	44	80	16	137	24	30	17	28	1.97
38870020--38870330	140	2.2	142	80	10	334	23	29	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38874446--38874592	37	4.0	37	92	0	231	27	30	19	23	1.98
38874800--38875090	47	6.1	47	87	4	393	26	30	12	31	1.92
38874912--38874989	23	3.2	25	65	17	74	29	30	10	29	1.90
38874800--38875090	147	2.0	141	88	4	429	26	30	12	31	1.92
38877029--38877207	85	2.1	85	98	0	349	26	27	8	37	1.85
38878653--38878761	57	1.9	58	88	1	166	28	28	19	23	1.98
38878973--38879404	40	10.8	40	93	0	720	24	29	22	23	1.99
38880681--38880804	37	3.4	37	96	0	221	25	31	19	23	1.98
38881013--38881303	47	6.1	47	88	4	402	26	30	12	31	1.92
38881013--38881303	147	2.0	141	89	4	438	26	30	12	31	1.92
38883245--38883424	85	2.1	86	97	1	344	26	27	8	37	1.85
38889413--38889453	21	2.0	21	85	0	55	46	0	2	51	1.14
38889492--38889526	18	1.9	18	88	0	52	31	5	2	60	1.35
38889579--38889661	32	2.7	30	72	5	76	54	14	4	26	1.60
38892738--38892795	29	2.0	29	96	0	107	31	8	13	46	1.74
38893013--38893205	98	2.0	98	92	0	323	30	15	20	34	1.93
38896536--38896565	14	2.1	14	100	0	60	43	0	20	36	1.52
38900145--38900175	15	2.0	16	93	6	55	38	0	0	61	0.96
38904164--38904192	14	2.1	14	100	0	58	27	27	6	37	1.82
38904937--38905111	85	2.1	85	98	0	341	37	8	27	26	1.84
38906364--38906854	47	10.1	47	84	7	613	31	12	29	26	1.93
38906364--38906854	98	5.0	98	89	5	728	31	12	29	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38906644--38906764	23	5.2	22	64	24	61	28	13	31	26	1.94
38906484--38906854	151	2.5	153	85	6	493	31	12	29	26	1.93
38906660--38906738	23	3.4	23	65	22	65	27	13	30	27	1.95
38906828--38906918	46	2.0	46	84	0	119	32	9	31	25	1.89
38906364--38906903	151	3.7	140	80	9	483	31	12	29	26	1.93
38907061--38907206	37	3.9	37	94	0	247	23	18	30	27	1.97
38910141--38910185	18	2.5	18	96	0	81	42	6	17	33	1.76
38927751--38927790	17	2.4	17	87	8	55	35	0	0	65	0.93
38937067--38937114	20	2.4	20	92	0	78	54	0	12	33	1.38
38937682--38937709	14	2.0	14	100	0	56	21	7	35	35	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250