genome.fa.s9.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  127  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40934430--40934480	19	2.7	18	79	11	57	37	1	5	54	1.36
40936114--40936240	59	2.1	60	81	4	141	47	14	3	34	1.62
40936563--40936680	61	1.9	61	82	0	146	38	8	14	38	1.76
40938326--40938370	22	2.0	22	87	8	65	28	2	4	64	1.25
40938331--40938385	27	2.0	28	86	13	78	30	1	5	61	1.29
40946114--40946147	17	2.1	17	88	5	52	58	0	0	41	0.98
40946600--40946633	5	6.8	5	100	0	68	41	0	17	41	1.50
40947657--40947714	24	2.3	26	77	11	68	53	3	3	39	1.35
40952679--40952718	20	2.0	20	85	9	55	37	2	0	60	1.11
40959360--40960025	221	3.0	221	95	0	1188	26	16	29	28	1.96
40963240--40963272	17	2.0	17	94	5	59	36	15	0	48	1.45
40963568--40963693	46	2.7	47	90	2	177	23	23	12	41	1.88
40967234--40967288	22	2.4	23	81	6	67	69	3	0	27	1.05
40967497--40967565	28	2.5	27	75	13	68	26	2	5	65	1.29
40967560--40967607	19	2.6	19	80	3	62	39	2	2	56	1.23
40969081--40969186	51	2.1	50	80	7	115	50	0	31	17	1.46
40969101--40969265	51	3.2	51	84	6	181	41	0	36	21	1.58
40982469--40982500	6	5.3	6	96	0	55	31	0	65	3	1.08
40982852--40982896	23	2.0	23	82	8	56	51	2	2	44	1.26
40986253--40986403	43	3.5	42	77	8	137	29	24	19	26	1.99
40990137--40990352	49	4.5	49	73	10	187	25	29	20	25	1.99
40990137--40990444	46	6.5	46	71	15	170	24	28	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40992319--40992521	75	2.7	75	79	1	219	38	19	17	25	1.93
40994045--40994230	48	3.9	48	84	0	246	26	19	24	29	1.99
40996770--40996858	32	2.8	32	75	13	83	29	6	24	39	1.81
40997001--40997069	26	2.6	27	79	6	79	30	13	23	33	1.92
41005442--41005466	12	2.1	12	100	0	50	52	16	0	32	1.44
41006200--41006231	7	4.6	7	96	0	55	46	15	21	15	1.83
41006678--41006855	88	2.0	88	89	2	268	26	12	15	45	1.82
41009072--41009096	5	5.0	5	100	0	50	60	0	0	40	0.97
41016490--41016538	21	2.3	22	82	7	64	42	6	6	44	1.54
41016533--41016573	22	1.9	22	90	5	66	26	14	7	51	1.69
41016685--41016717	17	1.9	17	93	0	57	42	12	3	42	1.57
41021119--41021158	17	2.3	18	86	4	55	20	25	40	15	1.90
41024963--41025134	67	2.7	64	76	7	186	28	16	30	24	1.97
41033885--41033945	26	2.3	26	88	2	86	26	37	14	21	1.92
41038890--41039017	60	2.2	58	80	9	150	43	13	4	38	1.65
41039244--41039353	55	2.0	55	82	3	132	48	10	10	30	1.73
41041119--41041247	27	4.8	27	82	6	156	35	22	23	18	1.96
41041108--41041247	54	2.6	54	89	3	212	35	23	22	17	1.95
41042696--41042721	13	2.0	13	100	0	52	61	0	7	30	1.24
41043916--41043945	11	2.6	11	94	5	51	80	3	6	10	1.01
41044587--41044810	44	5.1	44	86	3	270	24	28	15	31	1.96
41044974--41045579	138	4.4	138	94	0	1059	30	21	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41045361--41046825	138	10.6	138	91	1	2133	29	22	16	31	1.96
41044978--41046825	276	6.7	274	89	4	2018	30	22	16	31	1.96
41044998--41046825	414	4.4	419	86	6	2013	29	22	16	31	1.96
41050746--41050812	19	3.5	19	91	0	107	41	16	19	22	1.90
41050756--41050814	5	12.0	5	73	22	54	40	18	18	22	1.91
41050775--41050828	24	2.2	24	83	6	65	38	16	24	20	1.92
41050746--41050829	38	2.2	38	82	4	107	41	15	21	21	1.90
41054405--41054434	11	2.6	11	94	5	51	80	3	6	10	1.01
41054476--41054508	13	2.4	14	90	5	50	0	9	6	84	0.76
41056392--41056499	26	4.2	26	92	0	180	37	23	7	32	1.82
41063196--41063257	11	6.3	10	74	18	51	69	4	0	25	1.08
41063178--41063258	9	8.7	9	72	22	69	65	3	1	29	1.17
41065417--41065661	121	2.0	121	96	0	454	31	15	24	28	1.95
41069842--41069901	29	2.0	30	96	3	113	43	13	6	36	1.70
41072348--41072404	28	2.0	30	86	13	84	26	3	10	59	1.46
41073358--41073400	18	2.4	18	84	7	52	62	6	2	27	1.33
41091102--41091264	39	4.2	39	86	0	227	23	25	18	33	1.97
41091102--41091264	78	2.1	78	91	0	263	23	25	18	33	1.97
41098274--41098310	19	1.9	19	94	0	65	32	13	18	35	1.90
41111744--41111874	57	2.3	57	81	3	158	27	18	29	24	1.98
41111746--41111874	28	4.6	28	75	5	118	26	18	30	24	1.98
41113934--41114173	78	3.1	77	82	11	281	25	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41113934--41114154	40	5.7	39	86	8	274	24	22	27	25	2.00
41120408--41120449	18	2.3	18	84	8	59	38	4	21	35	1.75
41134938--41135007	27	2.6	27	95	2	113	31	28	12	27	1.93
41134938--41135035	28	3.5	28	90	2	135	31	28	13	26	1.94
41143014--41143083	27	2.6	27	95	2	113	31	28	12	27	1.93
41143014--41143111	28	3.5	28	90	2	135	31	28	13	26	1.94
41153929--41154075	66	2.2	66	87	3	208	40	3	4	52	1.37
41154070--41154104	9	3.8	9	92	7	61	51	2	0	45	1.16
41154716--41154758	21	2.0	21	86	4	59	41	2	0	55	1.12
41157077--41157110	12	2.9	12	86	4	52	32	0	0	67	0.91
41159699--41159766	22	3.2	22	76	15	63	17	38	23	20	1.93
41161354--41161498	40	3.6	40	85	4	184	25	24	26	24	2.00
41173281--41173319	19	2.1	19	85	9	53	17	5	2	74	1.12
41173263--41173328	22	3.0	21	79	18	64	19	4	3	72	1.15
41173516--41173563	3	16.0	3	95	0	87	33	2	0	64	1.05
41175715--41175772	29	2.0	28	90	3	89	48	8	22	20	1.77
41178261--41178444	94	2.0	94	92	0	305	28	26	26	19	1.98
41184590--41184798	39	5.3	39	88	0	301	22	25	20	32	1.97
41184590--41184796	78	2.7	78	94	0	360	22	25	20	32	1.98
41192624--41192651	14	2.0	14	100	0	56	28	0	28	42	1.56
41194163--41194192	11	2.7	11	94	0	51	46	13	0	40	1.43
41195620--41195658	14	2.9	14	84	3	53	66	2	0	30	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41195620--41195659	13	3.0	13	82	7	53	65	2	0	32	1.06
41195574--41195694	8	15.5	8	69	15	67	61	3	0	34	1.18
41195577--41195670	35	2.7	35	91	4	147	63	2	1	32	1.13
41195600--41195644	21	2.1	22	87	4	65	64	2	0	33	1.06
41195909--41195956	21	2.2	22	85	10	64	52	4	8	35	1.51
41199310--41199351	21	2.0	21	100	0	84	52	0	19	28	1.46
41200060--41200213	76	2.0	76	98	0	299	34	13	19	32	1.91
41215974--41216089	58	2.0	58	88	3	171	16	17	25	41	1.89
41217711--41217794	38	2.2	38	80	4	98	33	28	17	20	1.95
41217756--41217792	19	1.9	19	88	0	56	37	24	13	24	1.91
41224937--41224998	30	2.1	30	96	0	115	45	19	24	11	1.83
41228325--41228371	22	2.0	22	84	12	58	46	12	12	27	1.78
41235130--41235459	173	1.9	172	87	0	489	25	11	25	36	1.90
41237653--41237842	55	3.5	53	83	7	224	22	24	17	34	1.96
41237828--41237949	47	2.6	47	96	0	217	25	23	13	36	1.92
41247890--41248116	48	4.8	48	74	12	211	25	19	25	29	1.98
41251694--41251906	47	4.6	46	75	13	163	25	30	19	24	1.98
41251641--41251958	94	3.4	92	78	7	311	23	30	19	25	1.98
41258319--41258547	48	4.9	48	75	9	229	25	19	25	29	1.98
41269924--41269971	10	4.6	10	82	10	51	56	2	4	37	1.30
41273461--41273504	22	2.0	22	81	0	52	47	0	4	47	1.22
41278071--41278138	34	2.0	34	94	0	118	33	20	20	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41284185--41284304	40	3.0	40	73	10	109	33	26	15	24	1.95
41289946--41289977	17	1.9	17	93	6	57	62	0	25	12	1.30
41290693--41290769	38	2.0	38	100	0	154	51	12	12	22	1.74
41291524--41291576	8	6.1	8	77	16	52	77	0	9	13	0.99
41291531--41291576	19	2.5	19	80	16	53	76	0	8	15	1.02
41294113--41294179	33	2.0	33	97	0	125	61	14	4	19	1.50
41294374--41294850	147	3.2	144	82	7	579	44	4	9	41	1.57
41294811--41294854	21	2.1	21	86	0	61	50	2	6	40	1.42
41295261--41295323	31	1.9	34	81	15	80	25	15	4	53	1.61
41295296--41295379	36	2.3	37	95	4	152	30	5	2	60	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250