genome.fa.s9.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  129  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41649382--41649526	40	3.6	40	85	4	193	25	24	26	23	2.00
41652576--41652608	17	1.9	18	88	11	52	45	6	15	33	1.70
41653156--41653271	57	2.0	57	86	3	162	37	20	17	25	1.94
41654748--41655081	35	9.4	34	68	11	134	34	22	19	23	1.97
41654808--41655081	108	2.6	107	85	1	361	34	22	19	24	1.97
41665130--41665207	38	2.1	38	100	0	156	38	7	15	38	1.76
41666089--41666124	18	2.0	18	88	0	54	55	5	13	25	1.60
41666241--41666299	31	1.9	31	86	6	84	37	15	16	30	1.90
41669401--41669461	30	2.0	30	83	0	77	31	22	8	37	1.84
41673101--41673410	94	3.3	94	79	4	324	27	20	28	23	1.99
41673101--41673321	47	4.7	46	71	13	137	27	21	28	22	1.99
41678489--41678677	81	2.3	81	86	1	254	35	17	20	25	1.94
41678489--41678676	27	7.0	27	84	3	227	35	17	20	26	1.95
41678883--41678975	25	3.7	25	86	0	123	25	24	20	29	1.99
41682104--41682192	23	3.9	23	71	11	67	38	16	20	24	1.93
41682098--41682156	23	2.6	22	78	5	73	35	20	20	23	1.96
41682167--41682229	24	2.5	24	79	5	63	42	14	17	25	1.87
41682185--41682238	26	2.2	24	83	12	65	40	16	18	24	1.90
41693423--41693739	47	6.8	46	75	12	247	22	29	20	27	1.99
41696974--41697141	43	3.9	43	70	12	130	28	14	24	32	1.94
41699203--41699235	17	1.9	17	88	11	50	51	0	3	45	1.16
41701046--41701155	40	2.8	40	83	2	123	24	26	13	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41702747--41702871	62	2.0	62	100	0	250	28	6	19	45	1.74
41703525--41703624	43	2.3	43	74	3	103	28	16	25	31	1.96
41705854--41705961	55	2.0	55	83	7	139	36	21	23	19	1.95
41705881--41705961	27	2.9	27	83	7	101	33	22	23	20	1.97
41706352--41706382	8	3.9	8	91	0	53	3	22	25	48	1.66
41713210--41713282	28	2.6	29	86	2	103	30	30	13	26	1.94
41718042--41718121	39	2.1	39	100	0	160	35	17	2	45	1.62
41727781--41727816	16	2.2	17	95	5	65	72	0	5	22	1.05
41727873--41727902	14	2.1	14	100	0	60	30	36	6	26	1.82
41728387--41728430	22	2.0	22	95	0	79	34	0	11	54	1.36
41728387--41728436	22	2.2	23	89	7	75	34	0	10	56	1.33
41744438--41744802	194	1.9	194	95	0	667	33	9	17	38	1.83
41745804--41745841	20	2.0	20	89	5	60	34	18	0	47	1.49
41746601--41746628	13	2.2	13	100	0	56	50	28	14	7	1.69
41747718--41747770	24	2.2	24	86	6	72	39	5	7	47	1.56
41749566--41749805	115	2.0	120	82	8	289	24	27	22	25	2.00
41749566--41749805	40	6.1	39	83	10	269	24	27	22	25	2.00
41757550--41757771	40	5.6	39	85	7	247	24	27	22	24	2.00
41757550--41757771	76	2.8	79	82	10	249	24	27	22	24	2.00
41757550--41757771	116	1.9	118	84	7	301	24	27	22	24	2.00
41760107--41760158	26	2.0	26	96	0	95	28	34	23	13	1.92
41759867--41760236	104	3.6	104	94	2	638	30	30	20	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41760565--41760628	30	2.2	29	81	10	76	29	28	6	35	1.82
41760572--41760628	30	1.9	30	85	3	80	29	24	7	38	1.82
41767691--41767741	26	2.0	26	96	0	93	29	35	23	11	1.90
41767453--41767819	103	3.6	104	95	2	636	30	30	20	18	1.97
41768145--41768208	30	2.2	29	81	10	76	29	28	6	35	1.82
41768152--41768208	30	1.9	30	85	3	80	29	24	7	38	1.82
41772338--41772392	25	2.2	25	90	3	85	58	0	3	38	1.16
41772339--41772405	25	2.8	25	84	8	68	62	0	2	34	1.10
41772519--41772567	18	2.7	18	77	0	62	30	2	0	67	1.02
41773097--41773173	24	3.2	23	70	17	59	48	1	5	45	1.33
41775299--41775331	17	1.9	17	93	0	57	69	21	0	9	1.15
41776314--41776371	30	1.9	30	85	0	80	18	17	6	56	1.62
41776530--41776586	29	2.0	29	92	0	96	31	0	1	66	1.02
41776568--41776779	17	12.4	17	68	19	77	34	1	0	62	1.13
41776619--41776776	26	6.3	25	74	20	95	32	1	0	65	1.06
41776618--41776784	32	5.4	29	76	20	137	33	1	1	64	1.09
41776619--41776777	7	21.1	7	70	23	94	32	1	0	65	1.05
41776599--41776779	64	2.8	64	74	18	162	34	1	1	62	1.09
41776652--41776790	53	2.6	56	78	17	145	33	1	0	64	1.08
41776618--41776784	14	11.6	15	72	24	114	33	1	1	64	1.09
41789563--41789701	74	1.9	74	84	0	188	27	30	17	24	1.98
41789563--41789673	37	3.0	37	95	0	195	28	31	18	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41789563--41789701	37	3.8	37	88	1	154	27	30	17	24	1.98
41789847--41789992	46	3.1	46	85	5	186	27	29	8	34	1.86
41789966--41790301	47	7.1	47	88	2	429	26	29	11	32	1.92
41790103--41790177	22	3.3	22	65	17	62	25	33	13	28	1.93
41793597--41794073	40	11.9	40	94	0	760	25	28	22	23	1.99
41795219--41795328	37	3.0	37	89	1	168	30	30	16	22	1.96
41795219--41795356	73	1.9	74	81	4	172	28	29	16	25	1.97
41795502--41795647	46	3.1	46	85	5	186	27	29	8	34	1.86
41795621--41795956	47	7.1	47	88	2	420	26	29	11	32	1.92
41795711--41795832	22	5.3	22	61	18	59	25	31	13	28	1.94
41798166--41798633	45	10.5	45	67	16	244	31	15	26	26	1.95
41798154--41798633	90	5.4	90	87	2	641	31	15	26	27	1.95
41799998--41800054	29	2.0	29	92	0	96	31	0	1	66	1.02
41800088--41800225	23	6.3	23	75	18	93	33	1	0	64	1.08
41800093--41800225	5	26.6	5	72	24	95	33	1	0	64	1.08
41800087--41800225	35	4.0	35	81	10	153	33	1	0	64	1.07
41800087--41800223	7	19.1	7	71	23	99	32	1	0	64	1.07
41800534--41800576	17	2.6	17	81	3	52	20	2	9	67	1.30
41810511--41810733	78	2.8	79	84	6	265	25	21	26	25	2.00
41810511--41810733	40	5.7	40	83	7	269	25	21	26	25	2.00
41810550--41810756	80	2.7	78	82	8	201	27	20	26	25	1.99
41818419--41818643	40	5.7	40	86	5	296	24	21	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41818940--41819004	32	2.0	32	100	0	130	18	18	18	44	1.87
41828555--41828586	14	2.2	15	94	5	57	78	0	3	18	0.89
41832969--41833000	14	2.2	15	94	5	57	78	0	3	18	0.89
41838155--41838199	21	2.0	24	83	12	60	37	8	0	53	1.32
41842155--41842237	43	1.9	43	82	4	105	24	21	3	50	1.64
41854283--41854365	30	2.8	30	92	0	130	27	19	24	28	1.98
41854334--41854437	36	2.9	36	88	0	127	30	13	24	31	1.93
41859019--41859045	13	2.1	13	100	0	54	29	22	14	33	1.94
41866828--41866872	19	2.3	20	81	7	58	26	15	6	51	1.68
41875027--41875317	43	6.6	43	71	13	180	30	17	23	28	1.97
41875027--41875322	84	3.4	83	75	14	306	31	17	22	28	1.97
41875111--41875285	93	1.8	95	81	7	221	32	18	22	26	1.97
41875022--41875362	181	1.9	181	88	1	522	32	18	21	26	1.97
41875289--41875407	45	2.7	46	75	3	127	35	19	20	25	1.96
41875909--41875945	19	1.9	19	88	0	56	62	8	27	2	1.37
41877492--41877534	23	1.9	22	85	4	59	27	4	6	60	1.43
41883711--41883769	21	2.8	21	84	0	91	16	23	40	18	1.91
41888719--41888755	19	2.0	19	89	5	58	16	35	37	10	1.83
41890997--41891119	46	2.7	46	87	2	167	31	19	26	21	1.97
41906552--41906643	43	2.1	43	82	4	114	26	16	22	34	1.95
41906552--41906708	86	1.8	85	80	4	190	28	15	24	32	1.95
41914843--41915078	43	5.6	43	77	11	247	30	25	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41914843--41915078	84	2.8	84	79	7	241	30	25	17	25	1.97
41914824--41915078	127	2.0	127	93	3	433	30	26	17	25	1.97
41943884--41944072	50	3.8	50	80	2	191	30	10	19	39	1.85
41943882--41944072	100	1.9	100	89	2	294	30	9	19	39	1.85
41951463--41951628	50	3.3	50	79	3	190	31	13	16	39	1.87
41975163--41975240	37	2.1	37	95	0	138	28	11	16	43	1.83
41984368--41984472	26	4.0	26	83	6	113	38	20	11	29	1.88
41984371--41984472	53	1.9	53	84	4	134	38	20	10	30	1.87
41984886--41984928	21	2.0	21	100	0	86	4	4	51	39	1.44
42002570--42002612	6	7.3	6	89	10	63	65	0	2	32	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250