genome.fa.s9.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  174  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55633784--55633850	20	3.3	21	77	16	63	40	0	2	56	1.14
55633885--55633913	12	2.4	12	100	0	58	44	0	0	55	0.99
55636203--55636242	21	1.9	21	94	0	71	47	7	7	37	1.60
55638535--55638596	24	2.5	24	82	10	63	59	6	4	29	1.43
55638561--55638602	22	1.9	22	90	0	66	61	7	2	28	1.35
55638619--55638745	23	5.5	24	72	13	97	55	3	5	35	1.39
55639023--55639061	16	2.4	16	86	0	51	43	28	5	23	1.75
55639216--55639314	30	3.3	30	94	0	171	18	6	49	26	1.70
55639949--55640154	87	2.4	87	84	4	245	35	19	14	30	1.92
55640092--55640289	102	1.9	103	86	8	287	40	16	15	27	1.88
55640196--55640537	90	3.9	85	80	10	370	37	18	17	26	1.93
55640444--55641304	72	12.0	72	86	8	1115	32	19	16	30	1.94
55641410--55643068	74	21.9	74	71	19	821	33	20	16	29	1.95
55642230--55642258	14	2.0	15	93	6	51	48	13	6	31	1.69
55642349--55643072	155	4.7	149	72	21	397	32	21	16	29	1.95
55644424--55644465	16	2.7	16	85	3	59	0	23	0	76	0.79
55658091--55658141	13	3.2	18	66	28	51	33	11	3	50	1.57
55664904--55664936	17	2.0	17	94	5	59	36	3	6	54	1.41
55667184--55667292	55	2.0	55	90	0	173	40	10	11	38	1.74
55668514--55668597	41	2.0	41	100	0	168	41	4	19	34	1.72
55671655--55671992	154	2.2	154	91	0	541	21	26	19	31	1.97
55673801--55673900	43	2.3	43	89	3	148	24	14	26	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55674799--55674852	22	2.5	22	93	6	92	20	0	27	51	1.47
55674745--55674904	76	2.1	77	94	2	279	25	1	26	46	1.60
55677451--55677493	20	2.2	20	83	8	52	20	0	4	74	1.00
55686093--55686145	21	2.6	21	93	3	90	28	15	0	56	1.39
55686838--55686883	18	2.6	18	80	10	58	54	2	0	43	1.12
55686830--55686894	19	3.3	19	80	8	60	56	3	0	40	1.15
55686839--55686899	19	3.4	18	80	10	63	52	3	0	44	1.17
55686863--55686955	27	3.4	27	73	16	84	58	3	2	36	1.27
55697025--55697066	22	1.9	22	90	0	66	11	16	0	71	1.14
55697025--55697065	12	3.6	12	80	12	50	12	17	0	70	1.16
55700379--55700418	20	2.0	20	85	5	53	55	2	12	30	1.50
55700409--55700545	26	5.3	26	66	16	72	61	1	12	24	1.39
55700409--55700617	76	2.8	75	80	5	215	58	1	13	25	1.44
55700731--55700779	22	2.4	20	83	12	64	67	0	6	26	1.14
55700731--55700779	21	2.4	21	90	10	75	67	0	6	26	1.14
55700772--55700816	5	8.6	5	80	9	54	62	0	17	20	1.33
55700772--55700816	16	2.9	15	80	9	54	62	0	17	20	1.33
55700772--55700816	11	4.3	10	81	10	54	62	0	17	20	1.33
55701123--55701233	24	4.7	23	73	18	104	68	0	7	23	1.20
55701113--55701238	14	9.3	14	73	21	101	68	0	7	23	1.21
55701154--55701219	33	2.1	30	84	13	89	72	1	6	19	1.13
55701657--55701951	107	2.7	111	86	5	429	29	22	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55707665--55707760	50	1.9	50	87	4	140	36	18	9	35	1.83
55708667--55709354	128	5.2	135	76	8	497	29	15	13	41	1.85
55728064--55728147	27	3.2	26	89	5	114	35	22	23	17	1.95
55737893--55737943	16	2.9	17	80	16	52	5	19	5	68	1.31
55737873--55737943	33	2.1	35	84	5	92	4	19	4	71	1.19
55741195--55741229	17	1.9	19	88	11	56	62	8	8	20	1.49
55744089--55744175	44	2.0	44	93	0	147	44	12	14	27	1.82
55747142--55747491	132	2.7	133	82	5	383	35	19	18	26	1.95
55750076--55750209	66	2.0	66	97	0	250	38	5	16	39	1.71
55757111--55757140	15	2.0	15	93	0	51	76	10	6	6	1.15
55760973--55761021	25	2.0	25	95	0	89	30	10	26	32	1.89
55761999--55762379	25	15.6	24	66	16	124	59	4	6	29	1.44
55762078--55762159	26	3.2	26	85	1	103	60	3	7	28	1.40
55762239--55762332	27	3.6	26	71	16	79	62	7	4	25	1.40
55762259--55762378	48	2.4	48	80	6	116	60	5	5	29	1.42
55762641--55762680	11	3.6	11	82	0	53	22	15	5	57	1.57
55762706--55762770	17	4.1	17	73	18	68	30	1	0	67	1.00
55762906--55762939	12	2.8	12	95	0	59	70	0	0	29	0.87
55764551--55764947	44	8.7	44	69	12	226	27	22	19	29	1.98
55764555--55764990	184	2.4	183	84	3	570	27	22	20	29	1.98
55765250--55765794	44	12.4	44	66	7	257	28	20	23	28	1.98
55765212--55765794	88	6.7	88	89	1	830	28	19	23	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55765800--55766609	130	6.2	130	92	0	1161	26	21	20	31	1.98
55765806--55766626	44	18.9	44	73	8	524	25	22	20	31	1.98
55772200--55772326	47	2.6	52	78	14	144	61	3	6	29	1.36
55772193--55772545	26	14.2	25	70	13	146	59	4	6	29	1.43
55772457--55772549	25	3.7	24	72	17	64	58	7	5	29	1.48
55774744--55774812	35	2.0	35	91	5	113	39	11	10	39	1.75
55776331--55776391	29	2.2	28	85	5	79	21	6	8	63	1.44
55777427--55777467	17	2.2	19	87	12	59	34	9	4	51	1.56
55778063--55778153	28	3.2	28	87	6	130	34	26	4	35	1.76
55781466--55781495	6	5.0	6	91	0	51	66	3	0	30	1.07
55783704--55783753	25	2.0	25	84	11	66	26	26	2	46	1.64
55784834--55784878	21	2.1	22	88	12	67	0	28	0	71	0.87
55784843--55784884	20	2.0	21	86	4	59	4	26	0	69	1.08
55784893--55784919	2	13.5	2	100	0	54	0	48	0	51	1.00
55788786--55788827	13	3.3	13	80	3	50	33	0	21	45	1.52
55791353--55791380	13	2.2	13	100	0	56	39	0	0	60	0.97
55801989--55802013	13	1.9	13	100	0	50	88	0	12	0	0.53
55806821--55806867	19	2.5	19	83	16	62	6	4	14	74	1.17
55807704--55807730	14	1.9	14	100	0	54	77	0	7	14	0.97
55807768--55807865	18	5.3	18	69	13	56	57	4	4	34	1.37
55810823--55810878	19	2.9	19	78	5	60	30	10	1	57	1.43
55811123--55811151	14	2.0	15	93	6	51	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55814642--55814705	15	4.3	14	73	13	56	79	9	4	6	1.04
55814642--55814705	16	4.2	15	73	15	60	79	9	4	6	1.04
55815118--55815181	26	2.7	23	80	15	76	0	51	0	48	1.00
55815125--55815176	26	2.0	26	100	0	104	0	53	0	46	1.00
55815713--55815745	16	2.0	17	88	5	50	30	0	6	63	1.18
55818263--55818312	24	2.1	24	85	7	66	22	22	14	42	1.88
55825396--55825429	17	1.9	18	88	5	52	44	29	20	5	1.75
55825748--55826017	61	4.0	68	74	13	232	28	17	24	30	1.97
55825875--55826455	165	3.7	159	82	10	637	31	16	20	31	1.95
55826021--55826455	151	2.9	147	87	5	584	31	16	20	32	1.94
55826021--55826460	75	5.8	76	84	6	549	31	16	20	32	1.94
55826021--55826480	78	6.1	75	81	7	495	31	16	20	32	1.94
55827715--55827762	17	2.8	18	75	9	55	0	39	0	60	0.97
55828269--55828300	15	2.0	17	88	11	50	31	0	6	62	1.20
55828318--55828405	19	4.3	19	69	24	63	31	5	5	56	1.46
55830328--55830411	31	2.7	31	80	8	84	32	9	13	45	1.75
55830605--55830667	31	2.1	30	82	5	74	49	12	7	30	1.69
55831109--55831164	22	2.5	22	76	5	58	17	8	8	64	1.48
55832428--55832840	207	2.0	207	96	0	754	18	20	15	45	1.85
55832869--55832895	12	2.2	12	100	0	54	29	0	0	70	0.88
55834028--55834064	18	2.1	18	100	0	74	35	21	5	37	1.77
55835940--55835965	5	5.2	5	100	0	52	61	19	19	0	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55836112--55836252	27	5.2	27	76	11	146	36	21	22	19	1.95
55836112--55836251	54	2.6	54	87	4	203	36	21	22	20	1.95
55837869--55837975	26	4.2	26	92	1	180	36	23	7	32	1.83
55843132--55843262	27	4.9	26	85	5	147	34	20	23	21	1.97
55844884--55844991	26	4.2	26	93	0	189	36	24	7	32	1.83
55848276--55848343	22	3.0	22	79	10	75	42	19	20	17	1.89
55849155--55849238	26	3.2	26	94	0	141	32	4	25	38	1.77
55850963--55851224	137	1.9	137	89	4	413	25	20	24	30	1.99
55859944--55860022	29	2.6	30	86	9	99	48	6	3	41	1.47
55862902--55862945	22	1.9	22	86	9	61	70	0	9	20	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250