genome.fa.s9.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  143  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46318651--46318697	24	2.0	24	91	0	76	34	29	12	23	1.92
46318661--46318723	24	2.6	24	89	0	90	31	34	14	19	1.91
46326630--46326676	24	2.0	24	91	0	76	34	29	12	23	1.92
46326640--46326702	24	2.6	24	89	0	90	31	34	14	19	1.91
46331286--46331449	40	4.1	40	81	3	204	26	28	21	24	1.99
46339545--46339708	40	4.1	40	83	3	204	26	27	22	23	2.00
46341807--46342033	38	5.9	38	87	1	283	20	20	26	32	1.97
46345848--46346040	29	6.7	29	72	5	131	23	27	11	36	1.90
46345909--46346037	58	2.2	58	90	0	195	25	26	10	37	1.87
46345880--46346123	87	2.8	87	81	4	228	25	27	11	35	1.91
46345938--46346123	29	6.4	29	82	4	232	27	27	10	33	1.90
46359882--46360115	40	5.8	40	80	13	250	29	26	18	24	1.98
46359966--46360113	78	1.9	78	89	8	230	27	25	20	26	1.99
46362816--46363094	74	3.7	75	84	7	314	25	27	20	25	1.99
46362816--46363108	40	7.6	40	81	9	315	25	27	20	25	1.99
46362881--46363096	74	2.8	76	90	4	319	25	28	21	25	1.99
46362918--46363135	114	1.9	113	86	6	307	26	27	20	26	1.99
46363079--46363155	40	1.9	41	81	7	95	28	28	19	23	1.98
46366687--46366783	43	2.3	43	81	3	115	30	17	27	23	1.97
46371099--46371225	29	4.4	29	78	4	103	20	26	14	38	1.91
46371114--46371203	29	3.1	30	82	6	105	22	25	15	36	1.93
46375110--46375304	43	4.6	43	80	5	216	34	26	13	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46375116--46375351	86	2.8	84	81	5	246	31	26	14	27	1.95
46375155--46375351	82	2.3	84	81	5	220	31	26	14	26	1.95
46376053--46376430	23	16.5	23	72	9	218	37	23	5	33	1.77
46376076--46376343	69	3.9	68	78	5	252	38	22	4	35	1.74
46379867--46380011	40	3.6	40	82	4	166	24	26	23	25	2.00
46382756--46382979	47	4.8	47	76	11	201	25	27	17	29	1.97
46382755--46382979	94	2.4	93	80	7	249	25	28	17	29	1.97
46390267--46390393	63	2.0	63	96	0	236	33	27	10	29	1.90
46390443--46390667	47	4.8	48	84	6	257	24	28	17	29	1.97
46390487--46390713	94	2.4	93	80	10	230	25	28	17	28	1.97
46390585--46390715	46	2.8	44	83	11	156	27	30	15	26	1.96
46396608--46396649	21	2.0	21	100	0	84	19	19	33	28	1.96
46406437--46406612	56	3.1	56	98	0	334	45	9	22	22	1.80
46407745--46407969	40	5.7	40	84	5	269	25	22	26	25	2.00
46407745--46408002	119	2.2	119	79	6	265	26	22	26	25	2.00
46411450--46411495	24	1.9	24	86	0	65	34	26	10	28	1.90
46411544--46411599	11	5.5	11	71	16	57	35	12	19	32	1.89
46411533--46411599	20	3.3	20	93	0	116	34	11	20	32	1.90
46411650--46411745	47	2.1	47	96	2	176	28	20	20	30	1.98
46411649--46411766	23	5.0	24	91	5	179	27	21	22	28	1.99
46411958--46412018	31	2.0	31	86	0	86	36	14	22	26	1.93
46416566--46416897	47	7.1	47	88	0	450	34	10	28	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46416639--46416713	22	3.3	22	66	23	64	32	13	29	25	1.93
46416871--46416989	46	2.6	46	94	0	211	34	10	31	24	1.88
46423335--46423381	20	2.3	20	85	0	67	29	10	23	36	1.89
46423432--46423527	47	2.1	47	88	2	140	28	19	20	31	1.97
46423432--46423527	23	4.1	23	90	2	138	28	19	20	31	1.97
46423742--46423805	31	2.1	31	90	0	101	37	14	23	25	1.92
46426479--46426503	13	1.9	13	100	0	50	52	32	0	16	1.44
46428411--46428480	22	3.2	22	61	15	54	20	24	11	44	1.84
46428406--46428493	44	2.0	44	97	0	167	19	22	11	46	1.81
46435441--46435658	40	5.5	40	88	2	289	23	23	27	24	2.00
46443660--46443917	40	6.5	40	87	2	333	22	22	27	26	1.99
46454045--46454108	25	2.5	24	78	16	67	32	6	3	57	1.39
46469600--46469641	22	1.9	22	85	9	59	23	21	21	33	1.97
46469565--46469663	23	4.3	23	72	12	69	26	19	18	36	1.94
46472751--46472867	28	4.1	28	79	6	76	30	16	26	26	1.96
46472700--46472826	57	2.2	57	83	4	159	29	14	28	26	1.96
46476184--46476297	57	2.0	57	85	0	156	29	15	28	26	1.96
46488344--46488442	28	3.5	28	80	5	119	28	30	14	27	1.95
46488884--46488909	12	2.2	12	100	0	52	42	0	7	50	1.31
46492308--46492338	14	2.2	14	100	0	62	32	38	12	16	1.86
46492322--46492480	46	3.4	46	73	14	164	28	28	20	23	1.99
46492406--46492491	46	1.9	45	88	4	129	30	29	19	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46498632--46498732	29	3.5	28	84	7	123	31	27	13	26	1.94
46499180--46499205	12	2.2	12	100	0	52	42	0	7	50	1.31
46505281--46505429	43	3.5	43	82	5	151	23	18	24	33	1.97
46505286--46505429	42	3.3	43	80	4	166	24	18	25	31	1.97
46507114--46507146	13	2.5	13	100	0	66	33	36	9	21	1.85
46508222--46508298	38	2.0	38	89	0	118	29	25	14	29	1.95
46508272--46508448	48	3.7	48	87	0	248	30	22	16	31	1.95
46511048--46511094	15	3.1	15	78	0	58	59	14	12	12	1.61
46514031--46514219	48	4.0	48	83	4	224	31	20	16	31	1.95
46514031--46514215	94	2.0	93	83	1	235	30	21	16	31	1.95
46518431--46518563	67	2.0	67	93	0	230	21	18	32	27	1.97
46518686--46518725	20	1.9	22	90	10	66	57	10	10	22	1.61
46519531--46519556	4	6.5	4	100	0	52	76	0	23	0	0.78
46519798--46519862	25	2.6	25	82	4	78	24	26	10	38	1.88
46524533--46524717	68	2.8	64	78	11	178	30	14	28	27	1.95
46526668--46526718	26	2.0	25	84	7	66	41	21	21	15	1.90
46526703--46526798	27	3.6	27	82	0	111	35	21	22	19	1.96
46526939--46527003	27	2.4	26	82	10	76	24	27	18	29	1.98
46527056--46527269	27	7.9	27	78	10	159	31	11	17	40	1.84
46527054--46527244	54	3.5	54	85	2	231	31	10	17	40	1.84
46527056--46527269	54	4.0	53	82	7	184	31	11	17	40	1.84
46529363--46529491	67	1.9	67	87	3	188	25	17	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46529612--46529651	20	1.9	22	90	10	66	57	10	10	22	1.61
46530636--46530801	46	3.6	46	76	11	142	27	19	27	25	1.99
46548554--46548772	40	5.5	40	85	4	248	23	23	26	25	2.00
46551529--46551585	30	1.9	30	89	7	89	43	10	10	35	1.74
46566926--46566969	22	2.0	22	86	0	61	52	9	0	38	1.33
46567212--46567282	33	2.2	32	84	2	88	16	38	23	21	1.93
46572130--46572238	37	2.9	37	95	0	191	26	31	19	22	1.98
46572384--46572568	48	3.8	48	91	4	300	30	27	7	35	1.83
46572384--46572567	98	1.9	97	92	4	309	30	27	7	35	1.83
46572631--46572749	22	5.1	22	64	25	66	25	28	12	33	1.92
46572606--46572731	25	5.3	25	65	24	83	28	28	10	32	1.90
46572538--46572757	47	4.7	47	91	0	350	25	28	11	34	1.91
46581340--46581369	12	2.5	12	88	0	51	40	50	6	3	1.45
46583765--46583802	17	2.0	20	85	14	55	50	5	13	31	1.63
46591124--46591174	26	2.0	26	96	0	93	17	21	25	35	1.95
46594851--46594881	13	2.4	13	100	0	62	12	0	35	51	1.40
46605512--46605547	11	3.3	11	100	0	72	16	27	27	27	1.97
46605732--46605779	20	2.4	19	83	10	60	16	2	4	77	1.03
46607250--46607440	50	3.8	49	81	3	229	29	26	18	24	1.98
46607252--46607441	101	1.9	99	87	2	281	30	26	17	25	1.98
46612410--46612654	49	4.9	49	79	3	256	29	27	17	25	1.97
46612423--46612654	100	2.3	98	82	2	275	30	27	16	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46620342--46620565	40	5.6	40	82	2	254	24	25	23	26	2.00
46620306--46620565	79	3.3	79	81	4	265	24	25	23	26	2.00
46620342--46620565	119	1.9	121	82	5	285	24	25	23	26	2.00
46628533--46628754	40	5.6	40	83	4	263	23	27	23	25	2.00
46628497--46628754	79	3.3	80	81	5	276	23	26	24	25	2.00
46628497--46628754	119	2.2	118	81	6	299	23	26	24	25	2.00
46643500--46643843	27	12.8	27	83	0	350	28	14	15	41	1.86
46648622--46648752	27	4.9	27	88	1	167	29	19	8	42	1.80
46648622--46648778	27	5.8	27	87	1	147	31	19	8	40	1.81
46648630--46648778	81	1.8	81	80	8	178	32	18	8	40	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250