genome.fa.s9.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  36  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10835052--10835360	47	6.6	47	90	1	424	27	30	9	32	1.88
10837012--10837173	81	2.0	81	100	0	324	35	16	20	27	1.94
10847121--10847160	20	2.1	19	85	4	53	72	2	2	22	1.09
10852521--10852836	64	4.8	64	80	5	278	24	28	15	31	1.96
10852521--10852837	132	2.4	127	77	6	305	24	28	15	31	1.96
10857545--10857654	51	2.2	50	82	8	134	46	16	22	14	1.83
10859151--10859358	113	1.8	113	88	2	319	34	11	16	37	1.85
10888866--10888903	14	2.9	13	81	11	51	57	10	13	18	1.63
10889643--10889732	44	2.0	44	87	4	128	26	15	31	26	1.96
10889607--10890016	178	2.3	178	90	0	633	26	18	28	26	1.98
10903837--10903885	20	2.7	18	77	22	57	51	4	2	42	1.32
10903904--10903936	17	2.0	17	88	5	50	48	0	0	51	1.00
10904683--10904756	36	2.1	36	92	5	123	43	12	5	39	1.65
10915616--10915663	23	2.1	23	88	0	69	41	2	2	54	1.24
10916432--10916463	3	10.7	3	93	0	55	65	3	0	31	1.08
10918601--10918776	45	4.0	45	89	6	245	25	22	28	23	1.99
10927443--10927496	12	4.5	12	79	6	56	74	5	3	16	1.16
10927442--10927493	6	8.5	6	74	4	50	75	5	3	15	1.14
10928470--10928513	23	1.9	23	81	9	54	40	9	9	40	1.68
10936313--10936358	23	2.0	23	84	12	60	45	10	6	36	1.65
10936320--10936364	23	2.0	23	82	8	56	40	13	8	37	1.76
10940976--10941025	25	2.0	25	100	0	100	36	24	12	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10941317--10941380	3	20.7	3	78	15	51	65	4	1	28	1.21
10941316--10941381	26	2.7	24	76	21	66	66	4	1	27	1.20
10942896--10942966	24	3.2	24	66	22	64	23	22	12	40	1.88
10942885--10942966	42	2.0	42	92	0	137	23	19	14	42	1.88
10948253--10948457	27	7.6	27	85	3	205	29	29	15	26	1.96
10948253--10948456	54	3.8	54	84	3	257	29	29	15	25	1.96
10948307--10948456	81	1.9	81	88	0	228	27	28	16	27	1.97
10956412--10956616	27	7.6	27	85	3	205	29	29	15	26	1.96
10956412--10956615	54	3.8	54	84	3	257	29	29	15	25	1.96
10956466--10956615	81	1.9	81	88	0	228	27	28	16	27	1.97
10962460--10962503	5	9.0	5	85	5	54	20	0	2	77	0.88
10962460--10962509	19	2.6	19	83	3	55	22	0	2	76	0.89
10976045--10976070	13	2.0	13	100	0	52	15	0	0	84	0.62
10999913--10999990	24	3.2	24	73	7	75	29	7	3	58	1.43
10999896--11000011	28	4.4	26	70	15	87	31	6	3	59	1.38
11000007--11000063	27	2.1	27	87	6	80	26	3	7	63	1.36
11000017--11000089	27	2.8	27	83	4	78	31	4	5	58	1.39
11000321--11000579	26	10.6	24	67	17	122	28	5	5	61	1.40
11000328--11000509	46	3.8	45	76	9	139	29	6	4	60	1.40
11003953--11003999	19	2.5	19	86	6	60	25	21	6	46	1.74
11011627--11011738	44	2.5	44	86	0	143	30	18	18	32	1.95
11011683--11011829	44	3.3	45	72	8	131	32	17	22	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11011712--11011838	45	2.9	44	75	3	121	33	17	20	28	1.95
11011907--11012024	44	2.7	44	82	2	130	30	22	21	26	1.98
11011920--11012031	44	2.5	44	84	2	136	32	18	25	24	1.97
11013653--11013744	26	3.6	25	75	7	96	30	5	3	60	1.35
11013666--11013743	24	3.2	24	76	5	84	29	6	3	60	1.39
11013991--11014082	38	2.5	35	77	16	98	30	5	4	59	1.39
11014096--11014156	22	2.8	21	77	7	59	29	3	4	62	1.32
11018061--11018094	16	2.2	16	89	5	52	67	2	17	11	1.34
11019842--11019868	10	2.7	10	100	0	54	37	0	0	62	0.95
11021768--11021846	39	2.0	39	97	0	149	41	5	2	50	1.38
11028494--11028822	50	6.6	50	78	6	290	27	13	21	37	1.91
11028550--11028782	25	9.3	25	75	12	174	24	14	22	38	1.92
11028568--11028807	75	3.2	73	76	11	234	26	15	21	36	1.93
11028493--11028812	100	3.2	99	78	7	324	26	14	20	37	1.91
11028568--11028807	25	9.6	25	74	18	148	26	15	21	36	1.93
11028550--11028822	25	10.9	24	75	15	137	25	13	22	37	1.92
11030567--11030747	40	4.6	40	83	9	201	25	22	27	24	2.00
11030616--11030770	79	2.0	79	84	7	208	25	21	27	25	1.99
11035007--11035182	46	3.8	46	78	10	187	22	19	27	30	1.98
11035003--11035175	93	1.9	93	92	0	292	22	19	28	29	1.98
11038100--11038178	15	5.4	15	77	10	83	10	17	13	58	1.63
11038091--11038177	29	3.0	29	81	8	95	10	17	16	56	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11040560--11040735	46	3.8	46	80	12	216	20	21	29	28	1.98
11040556--11040727	93	1.8	93	94	0	308	20	21	30	27	1.98
11051755--11051862	31	3.5	31	81	6	114	45	7	18	28	1.76
11053441--11053479	6	6.3	6	88	5	60	15	15	0	69	1.20
11057256--11057295	21	2.0	20	85	5	53	50	22	2	25	1.62
11057536--11057562	12	2.2	12	100	0	54	29	7	0	62	1.22
11059824--11059861	5	8.0	5	82	11	53	18	0	2	78	0.86
11059824--11059863	13	2.9	13	88	7	53	17	0	5	77	0.94
11060525--11060567	21	2.0	21	86	8	61	11	30	30	27	1.92
11066073--11066165	23	4.1	23	84	2	125	22	24	4	48	1.69
11066076--11066165	45	2.0	46	86	2	128	23	24	4	47	1.70
11070577--11070670	23	4.1	23	85	0	134	22	25	4	47	1.69
11071429--11071462	5	6.8	5	100	0	68	41	0	0	58	0.98
11072351--11072379	14	2.0	15	93	6	51	55	0	0	44	0.99
11076479--11076509	15	2.1	15	93	0	53	61	3	6	29	1.37
11076635--11076683	21	2.3	21	78	0	62	65	0	6	28	1.16
11076820--11076929	3	36.7	3	72	8	73	60	4	7	28	1.43
11076825--11076864	20	2.0	21	85	5	55	57	2	12	27	1.48
11076846--11076923	17	4.4	17	75	15	68	60	6	5	28	1.43
11076896--11076945	12	4.2	12	82	14	59	68	2	0	30	1.01
11077708--11077732	12	2.1	12	100	0	50	16	8	36	40	1.77
11078077--11078857	205	3.8	204	90	3	1219	29	22	18	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11086758--11086788	15	2.1	15	93	0	53	6	35	0	58	1.24
11086832--11086881	15	3.5	14	79	15	50	42	8	24	26	1.82
11090447--11090477	15	2.1	15	93	0	53	61	3	6	29	1.37
11090603--11090650	21	2.3	21	81	0	60	64	0	6	29	1.18
11090759--11090859	3	33.7	3	71	9	55	59	3	8	27	1.45
11090764--11090803	20	2.0	21	85	5	55	57	2	12	27	1.48
11090785--11090823	17	2.4	17	86	4	62	64	5	2	28	1.28
11090838--11090875	12	3.2	12	88	7	51	71	0	0	28	0.87
11091635--11091659	12	2.1	12	100	0	50	16	8	36	40	1.77
11091864--11091900	12	3.0	13	80	15	51	24	0	0	75	0.80
11092038--11092081	17	2.4	18	85	14	56	18	0	6	75	1.02
11094121--11094167	24	2.0	24	82	0	58	53	17	19	10	1.72
11094130--11094175	24	1.9	24	82	8	58	47	17	21	13	1.81
11096807--11096831	7	3.6	7	100	0	50	76	0	12	12	1.04
11096794--11096844	26	2.0	26	84	7	68	80	3	9	5	1.01
11097385--11097423	9	4.3	9	93	6	62	79	0	0	20	0.73
11097375--11097444	9	7.8	9	76	10	54	80	4	0	15	0.87
11097401--11097444	21	2.1	21	86	0	61	81	4	0	13	0.83
11098854--11099038	44	4.2	44	84	6	221	28	16	25	28	1.97
11098854--11099019	88	1.9	88	87	2	244	30	16	25	27	1.97
11099089--11099189	44	2.3	44	91	0	166	20	20	31	26	1.98
11099341--11099443	44	2.3	45	81	5	120	30	18	22	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11099151--11099684	177	3.0	176	78	6	562	28	17	26	27	1.98
11099634--11100128	132	3.7	131	78	7	500	29	19	25	25	1.98
11107072--11107106	12	2.9	12	91	0	52	8	51	17	22	1.72
11122635--11122659	12	2.1	12	100	0	50	48	20	16	16	1.82
11130337--11130386	6	8.2	6	86	4	64	48	16	18	18	1.82
11130677--11130760	40	2.1	40	84	0	105	42	21	4	30	1.73
11137614--11137670	28	2.0	28	96	0	105	36	10	12	40	1.77
11138185--11138234	6	8.2	6	86	4	73	50	16	16	18	1.79
11138214--11138322	45	2.4	45	87	3	157	39	16	21	22	1.92
11138209--11138339	45	2.7	49	77	16	137	41	17	19	21	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250