genome.fa.s9.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  99  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32216175--32216301	57	2.2	57	88	2	193	33	25	11	29	1.91
32216177--32216277	28	3.6	28	90	2	166	33	22	11	31	1.91
32219872--32220068	100	2.0	101	93	2	342	29	26	18	25	1.98
32219867--32220061	49	3.9	49	81	5	239	28	26	18	26	1.98
32231989--32232154	45	3.6	45	79	13	162	24	29	16	29	1.96
32231989--32232154	46	3.6	45	79	9	160	24	29	16	29	1.96
32236417--32236554	43	3.2	42	86	4	195	21	17	31	28	1.96
32236899--32236957	21	2.8	21	89	0	82	3	54	15	27	1.57
32242447--32242739	9	33.7	9	82	7	329	32	0	22	44	1.56
32242567--32242630	22	3.1	22	86	13	100	28	0	29	42	1.56
32243008--32243074	29	2.3	28	87	7	98	55	0	0	44	0.99
32243020--32243134	39	2.9	39	90	1	176	54	3	0	41	1.17
32243040--32243133	19	4.9	18	71	15	73	54	4	0	41	1.20
32243011--32243138	68	1.9	68	80	9	154	54	3	0	42	1.16
32243671--32243701	15	2.1	15	100	0	62	51	22	0	25	1.48
32246747--32246801	27	2.0	27	100	0	110	21	10	27	40	1.87
32247589--32247642	21	2.6	21	87	0	81	20	0	25	53	1.45
32247735--32247796	21	2.9	21	74	11	63	24	1	25	48	1.60
32247744--32247803	21	2.9	21	78	9	68	26	1	21	50	1.59
32248420--32248730	154	2.0	155	82	6	373	26	20	20	32	1.97
32248687--32248770	40	2.1	40	82	4	98	27	22	15	34	1.94
32253191--32253363	46	3.7	46	79	10	208	21	20	27	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32253188--32253358	93	1.8	93	93	0	297	21	21	28	28	1.98
32253588--32253625	19	2.0	20	85	15	53	36	0	23	39	1.55
32257612--32257784	46	3.7	46	79	10	208	21	20	27	29	1.98
32257609--32257779	93	1.8	93	93	0	297	21	21	28	28	1.98
32258009--32258046	19	2.0	20	85	15	53	36	0	23	39	1.55
32262424--32262478	27	2.0	27	92	0	92	38	9	25	27	1.86
32262427--32262490	27	2.4	27	86	0	83	40	9	26	23	1.85
32263182--32264421	619	2.0	619	99	0	2435	33	26	11	28	1.92
32265086--32265179	27	3.5	27	94	0	161	37	7	26	28	1.83
32266224--32267820	818	1.9	823	93	2	2749	34	23	14	27	1.94
32267976--32268067	27	3.4	27	86	0	130	41	8	22	27	1.83
32269452--32269512	27	2.3	27	80	11	72	68	4	21	4	1.27
32269558--32269661	52	2.0	52	96	0	190	55	5	25	13	1.60
32281810--32281933	47	2.7	46	81	12	148	29	28	19	22	1.98
32281813--32281956	46	3.1	44	75	15	132	29	27	20	22	1.98
32289300--32289468	93	1.8	91	94	2	302	28	28	21	20	1.98
32289295--32289465	46	3.7	46	79	14	210	29	28	21	21	1.98
32289294--32289477	44	4.0	46	73	18	152	28	29	20	21	1.98
32289880--32289939	30	2.0	30	90	0	93	30	25	8	36	1.85
32300312--32300534	78	2.8	77	80	9	202	25	21	28	24	1.99
32300312--32300532	40	5.6	40	80	8	186	25	22	28	24	1.99
32300392--32300567	79	2.3	78	81	5	187	25	22	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32320441--32320574	43	3.2	42	83	4	162	26	16	27	29	1.97
32320442--32320562	41	2.9	43	85	3	156	25	15	28	30	1.96
32321825--32321995	93	1.8	93	93	2	299	30	28	20	20	1.98
32321820--32321992	46	3.7	46	78	14	203	31	27	20	20	1.98
32328294--32328418	45	2.7	46	91	2	198	29	27	22	20	1.99
32328842--32328899	30	1.9	31	85	3	82	31	24	5	39	1.77
32334799--32334864	28	2.4	28	84	0	78	21	25	24	28	1.99
32338523--32338754	49	4.7	50	80	4	254	29	26	18	25	1.98
32338523--32338747	101	2.3	98	84	3	290	30	26	18	25	1.98
32348708--32348786	28	2.8	28	90	0	122	24	32	16	26	1.96
32348710--32348803	28	3.4	28	86	0	107	24	34	14	26	1.94
32351130--32351191	27	2.3	27	91	0	97	29	12	16	41	1.85
32351141--32351324	27	6.9	27	73	12	112	30	11	18	39	1.87
32351143--32351324	54	3.4	53	72	13	165	30	12	18	39	1.87
32351144--32351294	53	2.8	53	78	11	139	29	11	19	39	1.86
32354377--32354552	46	3.8	46	75	12	180	22	19	27	30	1.98
32354374--32354544	93	1.8	93	91	0	279	22	19	28	29	1.98
32361819--32361991	46	3.7	46	72	13	156	24	17	27	30	1.97
32361813--32361983	93	1.8	93	88	0	261	23	19	27	29	1.98
32369520--32369640	47	2.6	47	90	0	206	28	28	18	23	1.98
32372421--32372487	15	4.5	15	71	14	50	56	13	16	13	1.67
32375510--32375679	47	3.6	47	75	13	188	30	27	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32375457--32375722	46	5.7	46	72	15	174	29	27	19	23	1.99
32375464--32375729	93	2.9	93	86	1	354	28	27	20	23	1.99
32377863--32377887	13	1.9	13	100	0	50	64	16	4	16	1.44
32391859--32391910	27	1.9	27	92	0	86	28	17	15	38	1.90
32397153--32397269	51	2.3	51	98	0	225	51	10	21	17	1.74
32398409--32398655	40	6.2	40	89	3	340	24	22	27	25	2.00
32405235--32405356	51	2.4	51	97	0	226	50	10	22	17	1.76
32406481--32406581	40	2.5	40	85	7	127	28	22	25	22	1.99
32412075--32412108	18	1.9	17	88	5	50	20	8	41	29	1.82
32416422--32416511	39	2.3	39	88	5	128	22	31	23	23	1.99
32416422--32416564	40	3.6	40	80	11	141	23	29	23	23	1.99
32428318--32428464	51	2.9	51	91	3	235	25	27	14	31	1.95
32428507--32428570	24	2.7	24	95	0	110	21	20	15	42	1.89
32448276--32448491	40	5.5	40	87	6	282	25	20	26	26	1.99
32448276--32448491	79	2.7	80	83	9	291	25	20	26	26	1.99
32448308--32448524	79	2.8	79	84	7	239	26	20	27	25	1.99
32456146--32456367	40	5.7	40	86	8	287	24	22	27	25	2.00
32462261--32462322	22	2.8	22	85	0	79	12	3	51	32	1.56
32465259--32465452	47	4.1	47	87	0	271	34	10	28	26	1.90
32465422--32465592	48	3.5	48	92	4	290	35	7	26	30	1.84
32465730--32465836	37	2.9	37	95	0	187	23	18	31	26	1.97
32467204--32467351	31	4.8	31	81	0	181	25	25	16	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32467204--32467351	62	2.4	62	95	1	262	25	25	16	33	1.95
32467569--32467638	25	2.8	25	97	0	131	27	22	22	27	1.99
32467750--32467799	25	2.0	25	84	0	64	30	14	22	34	1.93
32470003--32470027	3	8.3	3	100	0	50	64	0	0	36	0.94
32472094--32472177	31	2.7	31	81	1	98	21	27	17	33	1.96
32472390--32472441	25	2.1	25	85	3	70	30	19	17	32	1.95
32472384--32472442	24	2.4	23	78	10	64	28	22	18	30	1.97
32476927--32477007	31	2.6	31	84	7	110	20	28	20	29	1.98
32477218--32477269	25	2.1	25	92	3	88	26	19	21	32	1.97
32477198--32477270	25	3.0	23	84	9	83	26	21	23	28	1.99
32482595--32482758	40	4.2	39	86	6	208	25	28	21	24	1.99
32482595--32482758	79	2.1	79	84	8	210	25	28	21	24	1.99
32487139--32487256	42	2.8	43	82	7	143	24	27	21	26	1.99
32501311--32501336	11	2.4	11	100	0	52	23	19	7	50	1.73
32503335--32503505	27	6.3	27	75	11	120	39	22	9	28	1.86
32503482--32503890	27	15.2	27	83	3	466	30	21	7	40	1.80
32505917--32506016	27	3.6	28	86	4	121	31	30	13	26	1.93
32505918--32506016	28	3.5	28	84	2	128	31	30	13	25	1.93
32514092--32514161	27	2.6	27	95	2	113	31	28	12	27	1.93
32514092--32514189	28	3.5	28	88	2	126	32	28	12	26	1.92
32517930--32517985	27	2.2	25	84	12	69	48	19	7	25	1.74
32517970--32518486	27	19.2	27	86	2	585	30	21	7	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32521553--32521744	40	4.8	40	90	2	253	25	30	21	21	1.99
32529888--32530118	79	2.9	81	88	3	326	26	30	21	21	1.98
32529888--32530118	40	5.8	40	91	3	315	26	30	21	21	1.98
32532085--32532187	39	2.6	39	87	1	143	29	28	18	24	1.98
32532085--32532240	40	3.9	40	80	9	167	27	27	20	24	1.99
32540227--32540409	79	2.3	81	84	7	232	25	27	22	24	2.00
32540206--32540409	40	5.1	40	82	8	238	25	27	22	24	2.00
32542296--32542355	27	2.3	26	82	2	66	23	23	18	35	1.96
32542473--32542540	25	2.7	25	84	8	93	17	19	16	47	1.83
32542502--32542576	6	12.2	6	78	16	82	16	21	16	46	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250