genome.fa.s9.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  118  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38038523--38038747	50	4.5	50	74	12	203	26	16	24	32	1.96
38038848--38038899	27	2.0	26	81	11	61	38	1	23	36	1.66
38040465--38040670	27	7.6	27	81	4	218	24	20	19	35	1.96
38040444--38040673	54	4.3	52	85	4	244	25	19	18	36	1.95
38040464--38040670	81	2.6	81	86	1	245	24	20	19	35	1.95
38049225--38049281	27	2.1	27	90	3	89	33	17	19	29	1.95
38056839--38056940	28	3.6	28	85	5	134	36	10	24	28	1.89
38056834--38056940	56	1.9	56	88	0	160	35	10	25	28	1.89
38064929--38064979	26	2.0	26	92	0	84	19	17	21	41	1.91
38066236--38066267	15	2.1	16	88	11	50	25	0	21	53	1.46
38078813--38078980	27	6.2	27	78	2	131	41	20	8	30	1.81
38078963--38079180	27	8.1	27	82	4	217	31	20	5	42	1.76
38078968--38079180	54	3.9	54	90	1	266	31	19	6	42	1.75
38078963--38079180	80	2.7	80	83	5	260	31	20	5	42	1.76
38079685--38079753	6	11.3	6	78	9	68	21	15	14	47	1.81
38081698--38081975	54	5.1	54	83	3	308	40	20	6	32	1.79
38081679--38081975	81	3.7	80	82	4	321	40	20	6	32	1.78
38081698--38081975	27	10.3	27	82	1	279	40	20	6	32	1.79
38081961--38082228	27	9.9	27	84	1	322	31	20	7	41	1.79
38081926--38082228	54	5.6	54	83	3	342	32	21	6	39	1.80
38081926--38082228	81	3.7	79	82	6	315	32	21	6	39	1.80
38082732--38082794	6	10.3	6	74	16	58	20	15	14	49	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38086186--38086230	20	2.2	20	88	0	63	37	11	2	48	1.51
38090828--38090859	14	2.4	13	90	10	55	62	12	6	18	1.50
38094416--38094514	35	2.8	36	73	11	98	41	19	10	29	1.84
38098077--38098176	27	3.6	27	86	8	112	32	29	12	27	1.92
38098079--38098176	28	3.5	28	91	2	144	32	28	12	26	1.92
38106029--38106095	18	3.7	18	84	4	66	47	11	14	25	1.79
38106421--38106604	27	6.8	27	78	6	185	40	21	15	21	1.91
38106421--38106604	54	3.4	53	83	3	224	40	21	15	21	1.91
38106421--38106606	81	2.3	81	87	1	257	40	21	15	22	1.91
38112913--38113017	53	2.0	53	86	0	147	19	25	18	37	1.94
38118778--38118847	21	3.2	21	67	25	63	18	14	25	41	1.88
38127505--38127756	55	4.8	53	80	7	230	21	25	17	35	1.95
38134919--38134949	16	1.9	16	93	0	53	35	22	0	41	1.54
38134916--38134955	20	2.0	20	85	0	53	37	22	0	40	1.54
38135125--38135376	55	4.7	54	80	9	261	21	25	17	35	1.95
38135172--38135372	108	1.8	110	89	4	318	22	25	17	33	1.96
38135715--38135771	30	1.9	30	85	0	78	31	21	7	40	1.80
38140519--38140557	19	2.1	19	100	0	78	17	5	30	46	1.70
38149942--38150155	27	7.9	27	80	7	154	33	10	18	37	1.85
38149941--38150153	54	3.9	53	80	8	216	33	9	19	37	1.85
38149969--38150160	81	2.4	81	82	6	228	31	9	20	38	1.85
38151907--38152035	46	2.8	46	84	3	161	31	24	20	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38154244--38154278	15	2.4	15	90	4	54	68	8	14	8	1.38
38161398--38161476	37	2.1	37	90	0	122	25	31	18	24	1.98
38161594--38162212	47	13.1	47	96	2	1109	29	30	8	31	1.87
38165691--38165926	40	5.9	40	89	1	303	25	28	22	24	1.99
38165691--38165926	80	3.0	80	88	1	339	25	28	22	24	1.99
38165708--38166042	40	8.5	39	83	9	181	25	27	22	24	2.00
38166347--38166425	29	2.7	29	86	5	106	27	32	15	24	1.95
38166407--38166509	43	2.4	43	100	0	206	26	35	15	22	1.94
38168551--38168910	46	7.7	46	93	3	587	29	30	8	31	1.87
38168549--38168910	93	3.9	93	94	2	602	29	30	8	31	1.87
38168886--38168933	23	2.1	23	96	0	87	35	27	0	37	1.57
38168833--38168981	71	2.1	71	95	5	266	32	28	5	33	1.80
38168786--38169170	117	3.1	117	84	13	434	30	29	7	32	1.84
38168694--38169123	210	2.0	211	95	3	785	30	29	7	32	1.85
38168849--38168981	69	1.9	69	96	3	203	31	28	6	33	1.81
38168904--38169189	47	6.1	47	95	4	499	30	29	8	31	1.87
38168904--38169189	96	3.0	93	94	5	497	30	29	8	31	1.87
38172928--38173100	93	1.9	93	88	0	265	30	28	19	21	1.98
38172921--38173097	46	3.8	46	74	12	164	31	28	18	22	1.97
38175329--38175363	15	2.4	15	90	4	54	65	11	14	8	1.46
38178119--38178182	31	2.1	31	87	0	92	26	23	14	35	1.93
38178395--38178543	24	6.1	25	94	4	245	27	18	20	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38178375--38178543	48	3.5	48	91	4	252	27	20	21	31	1.98
38178375--38178543	72	2.3	72	89	6	252	27	20	21	31	1.98
38178597--38178659	20	3.2	20	88	0	99	31	19	14	34	1.91
38178696--38178743	25	1.9	25	86	0	69	25	16	25	33	1.96
38186233--38186296	31	2.1	30	88	2	92	26	20	15	37	1.92
38186489--38186649	23	7.0	24	86	12	223	28	21	20	29	1.98
38186489--38186649	45	3.5	47	86	11	219	28	21	20	29	1.98
38186489--38186649	68	2.3	69	89	9	256	28	21	20	29	1.98
38186703--38186765	20	3.2	20	90	0	108	30	19	14	36	1.91
38194192--38194298	40	2.7	41	84	8	123	26	26	19	28	1.99
38194235--38194365	40	3.3	39	82	4	163	29	25	19	25	1.99
38194238--38194418	80	2.3	80	83	7	217	27	26	20	24	1.99
38194239--38194418	40	4.5	40	78	8	154	27	26	20	25	1.99
38208001--38208133	27	5.0	28	85	7	170	28	10	21	39	1.86
38208001--38208131	53	2.4	54	83	7	176	29	10	19	40	1.85
38208458--38208491	17	2.0	17	88	11	52	14	38	29	17	1.90
38214227--38214279	27	2.0	27	88	0	79	62	9	5	22	1.47
38221572--38221702	45	3.0	44	85	4	174	26	28	21	23	1.99
38227638--38227679	20	2.0	22	82	13	54	57	14	9	19	1.64
38228208--38228338	45	3.0	45	80	4	142	28	27	19	24	1.99
38228981--38229019	19	2.1	19	85	0	51	71	7	5	15	1.26
38229480--38229569	27	3.2	27	78	7	92	32	24	23	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38236836--38236874	19	2.1	19	85	0	51	71	7	5	15	1.26
38237318--38237426	55	2.0	55	82	10	134	34	22	23	19	1.96
38237337--38237426	27	3.2	27	78	10	101	32	24	23	20	1.98
38259204--38259375	43	4.0	44	80	5	172	26	12	26	34	1.92
38260706--38260936	109	2.1	109	90	0	363	19	24	29	25	1.99
38274214--38274448	39	6.0	39	85	2	242	29	28	23	18	1.98
38274241--38274448	78	2.7	78	86	1	292	29	27	23	18	1.98
38274226--38274448	117	1.9	119	85	3	308	28	27	24	19	1.98
38277623--38277728	55	1.9	55	84	3	142	25	30	26	17	1.98
38280552--38280737	40	4.6	41	81	10	206	25	27	22	24	2.00
38280552--38280737	79	2.3	81	80	9	202	25	27	22	24	2.00
38287634--38287658	11	2.3	11	100	0	50	40	0	0	60	0.97
38294256--38294294	16	2.4	17	91	8	64	51	0	0	48	1.00
38295655--38295685	15	2.1	15	93	0	53	19	0	25	54	1.44
38295714--38295757	22	2.0	22	100	0	88	63	9	4	22	1.42
38296294--38296403	45	2.6	41	81	8	114	22	17	28	31	1.96
38302572--38302652	37	2.2	39	80	14	91	34	7	0	58	1.26
38302871--38302904	14	2.3	15	90	5	52	38	2	2	55	1.30
38302954--38303003	16	3.2	16	74	23	52	34	2	0	64	1.05
38314842--38315419	205	2.8	205	91	0	924	30	18	21	29	1.97
38319169--38319399	47	4.9	47	89	4	340	32	10	30	26	1.90
38319271--38319392	22	5.3	22	62	21	61	33	11	29	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38319164--38319420	47	5.4	47	87	3	329	33	9	29	27	1.88
38321845--38321919	38	2.0	38	86	5	107	30	18	26	24	1.98
38321973--38322173	40	5.1	40	87	0	278	25	22	27	24	2.00
38324525--38324870	47	7.3	47	91	3	482	32	9	30	27	1.89
38327165--38327198	14	2.3	15	90	5	52	38	2	2	55	1.30
38327218--38327274	25	2.3	24	82	14	64	36	5	1	56	1.32
38327246--38327288	15	2.8	15	76	16	52	37	2	0	60	1.10
38332850--38332899	24	2.1	24	84	0	64	22	14	28	36	1.92
38351635--38351766	40	3.3	40	82	3	151	26	27	21	25	1.99
38351663--38351814	79	1.9	80	80	6	175	27	26	20	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250