genome.fa.s9.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  148  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48030271--48030708	108	4.1	108	90	0	651	24	19	18	38	1.93
48030748--48031284	27	20.1	26	81	6	530	30	9	20	39	1.84
48030749--48031284	53	10.0	53	82	5	564	30	9	20	39	1.84
48030749--48031284	107	5.0	107	82	6	581	30	9	20	39	1.84
48035452--48035494	23	2.0	21	90	9	68	44	6	6	41	1.58
48036689--48036716	7	4.0	7	100	0	56	42	0	0	57	0.99
48037804--48037926	34	3.6	33	78	8	131	18	21	24	34	1.96
48042229--48042273	21	2.1	21	83	0	54	33	2	4	60	1.29
48042267--48042318	26	2.0	25	85	11	68	40	3	0	55	1.18
48051831--48051861	16	1.9	16	93	0	53	35	0	16	48	1.46
48054623--48054881	39	6.6	39	92	0	392	30	27	20	21	1.98
48057156--48057203	21	2.3	21	92	0	78	14	27	31	27	1.95
48057167--48057211	21	2.1	21	91	0	72	11	20	35	33	1.88
48057749--48057790	16	2.6	16	92	0	66	33	0	35	30	1.58
48058035--48058069	18	2.0	17	88	5	52	54	0	0	45	0.99
48058169--48058210	15	2.7	16	82	14	52	52	2	0	45	1.13
48057922--48058219	154	1.9	156	95	2	546	44	3	5	47	1.41
48058178--48058312	15	8.9	15	67	24	70	51	3	2	42	1.32
48057961--48058276	154	2.0	155	83	7	401	46	4	3	45	1.39
48058238--48058328	44	2.1	43	81	6	103	53	3	2	40	1.29
48058218--48058436	120	1.8	119	89	6	345	50	5	3	40	1.44
48058397--48058435	17	2.5	15	80	15	51	51	0	5	43	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48058402--48058435	17	2.0	17	94	0	59	50	0	5	44	1.26
48058468--48058662	93	2.1	92	88	4	286	47	4	4	44	1.41
48060063--48060089	11	2.5	11	100	0	54	51	18	7	22	1.70
48062333--48062363	15	2.1	15	100	0	62	45	0	19	35	1.51
48066907--48067122	40	5.5	40	85	4	262	25	27	23	23	2.00
48068378--48068416	10	3.9	10	83	9	53	0	17	0	82	0.68
48074891--48075068	40	4.5	40	87	3	227	24	28	24	23	2.00
48080036--48080417	47	8.1	47	93	1	593	32	9	29	28	1.89
48080536--48080614	37	2.1	37	88	4	115	25	18	30	25	1.98
48094428--48094454	11	2.5	11	100	0	54	18	0	0	81	0.69
48097969--48098026	30	1.9	30	85	0	80	43	5	22	29	1.75
48098482--48098804	64	4.9	65	78	8	282	32	14	27	24	1.94
48102737--48102851	42	2.7	41	85	9	151	27	25	15	31	1.96
48102970--48103180	31	6.8	31	91	2	298	27	25	19	27	1.99
48103156--48103284	50	2.5	51	87	5	181	27	21	15	35	1.94
48106112--48106140	14	2.0	15	93	6	51	58	0	0	41	0.98
48106827--48106852	9	2.9	9	100	0	52	42	0	0	57	0.98
48107296--48107325	15	2.0	15	93	0	51	40	0	3	56	1.16
48110470--48111377	453	2.0	453	98	0	1735	34	14	19	31	1.92
48111395--48111532	62	2.2	62	81	7	163	26	18	28	26	1.98
48113820--48113968	43	3.5	43	68	16	112	26	18	23	30	1.98
48117904--48117946	17	2.4	19	88	7	63	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48117902--48117960	29	2.0	29	83	6	75	37	0	0	62	0.95
48129364--48129401	19	2.0	20	85	15	53	39	23	0	36	1.55
48129630--48129800	93	1.8	93	93	0	297	28	28	21	21	1.98
48129625--48129797	46	3.7	46	79	10	208	29	27	20	21	1.98
48130220--48130279	30	2.0	30	90	0	93	30	25	8	36	1.85
48136955--48136992	19	2.0	20	85	15	53	39	23	0	36	1.55
48137221--48137391	93	1.8	93	92	2	290	29	28	20	21	1.98
48137216--48137388	46	3.7	46	79	11	201	30	27	20	21	1.98
48137811--48137870	30	2.0	30	90	0	93	30	25	8	36	1.85
48139977--48140067	44	2.1	44	91	0	146	46	10	9	32	1.72
48145272--48145822	292	1.9	292	90	0	870	31	17	22	28	1.97
48148762--48148815	20	2.8	20	85	2	65	25	20	25	27	1.99
48149599--48149667	34	2.0	34	91	0	111	37	30	5	26	1.80
48149898--48149940	20	2.3	18	81	18	52	34	16	2	46	1.60
48151375--48151508	23	5.8	23	77	9	105	36	17	22	23	1.94
48151439--48151508	24	3.0	24	83	6	81	37	21	22	18	1.94
48153023--48153128	43	2.5	43	80	7	110	29	16	22	31	1.96
48164487--48164527	19	2.3	18	87	8	57	53	0	0	46	1.00
48165477--48165829	187	1.9	182	81	6	424	39	0	33	26	1.59
48167220--48167258	20	2.0	20	100	0	78	61	12	10	15	1.56
48169542--48169604	3	21.3	3	79	12	60	33	4	0	61	1.17
48169634--48169676	17	2.4	18	81	14	54	27	9	0	62	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48171458--48171482	9	2.8	9	100	0	50	32	8	36	24	1.84
48181494--48181670	96	1.8	96	81	2	221	33	16	20	29	1.95
48181593--48181813	45	5.0	44	75	8	182	31	16	20	31	1.95
48183143--48183188	3	15.3	3	78	17	51	34	0	2	63	1.07
48183143--48183187	18	2.5	19	82	10	58	35	0	2	62	1.08
48183143--48183188	21	2.2	21	88	7	67	34	0	2	63	1.07
48183161--48183192	15	2.1	15	100	0	64	31	0	0	68	0.90
48185658--48185697	13	3.2	13	82	7	55	0	20	0	80	0.72
48186475--48186506	13	2.5	13	100	0	64	0	28	40	31	1.57
48186977--48187015	19	2.1	19	95	0	69	23	30	7	38	1.83
48199471--48199539	29	2.5	28	76	9	70	30	18	26	24	1.98
48199864--48199954	45	2.0	45	91	4	148	20	19	19	39	1.93
48209451--48209582	25	5.4	24	87	6	178	31	21	18	28	1.97
48209631--48209697	20	3.3	20	93	0	116	32	20	11	34	1.90
48209631--48209686	11	5.5	11	71	16	57	32	19	12	35	1.89
48212738--48212771	6	5.7	6	100	0	68	14	0	0	85	0.60
48224245--48224276	12	2.7	12	100	0	64	25	18	34	21	1.96
48228418--48228456	20	2.0	20	84	0	51	58	5	5	30	1.41
48233987--48234156	68	2.5	68	83	1	198	35	15	23	25	1.94
48234280--48234394	30	3.8	30	94	0	185	45	6	22	26	1.75
48234287--48234394	15	7.2	15	65	12	69	44	6	22	26	1.77
48238978--48239085	15	7.2	15	69	12	87	43	7	23	25	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48238971--48239085	30	3.8	30	97	0	203	44	6	23	25	1.78
48246608--48246651	3	14.7	3	85	0	61	34	34	0	31	1.58
48248188--48248241	26	2.0	27	82	10	67	42	3	18	35	1.68
48248414--48248479	30	2.2	30	82	12	84	42	0	1	56	1.08
48253224--48253313	44	2.0	44	82	4	110	44	4	12	38	1.62
48253893--48253953	20	3.2	19	73	13	54	49	0	3	47	1.18
48254213--48254288	37	2.1	37	89	0	116	32	9	15	42	1.79
48257439--48257498	29	2.1	29	96	0	111	31	25	20	23	1.98
48263214--48263247	17	1.9	18	88	5	52	50	5	5	38	1.51
48263775--48263816	20	2.0	21	82	13	52	30	4	14	50	1.63
48263898--48263959	32	2.0	31	90	9	99	40	0	4	54	1.22
48270671--48270712	21	2.0	21	95	0	75	30	4	28	35	1.78
48281622--48281663	13	3.0	14	76	13	50	16	9	42	30	1.80
48282931--48282969	20	2.0	20	100	0	78	35	12	20	30	1.90
48283021--48283115	23	4.1	23	93	0	154	28	20	18	32	1.96
48283330--48283393	31	2.1	31	90	0	101	39	15	21	23	1.92
48290822--48290867	24	1.9	24	90	0	74	36	26	10	26	1.89
48290916--48290971	11	5.5	11	71	16	57	35	12	19	32	1.89
48290905--48290971	20	3.3	20	91	0	107	35	11	19	32	1.88
48291020--48291096	24	3.2	24	92	3	129	29	19	19	31	1.96
48291022--48291094	23	3.1	23	92	3	119	28	20	19	31	1.97
48291309--48291367	31	1.9	31	92	0	100	35	16	23	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48293243--48293269	5	5.4	5	100	0	54	22	0	0	77	0.76
48299798--48299903	21	5.0	21	87	0	131	35	16	29	18	1.93
48304770--48304886	62	1.9	62	85	0	162	26	27	20	25	1.99
48308046--48308091	20	2.3	20	82	14	60	28	28	17	26	1.98
48308058--48308101	19	2.2	20	84	4	54	34	25	18	22	1.96
48314268--48314305	20	1.9	20	94	0	67	26	5	13	55	1.59
48317598--48317905	126	2.5	126	81	3	336	38	20	14	26	1.90
48318005--48318058	23	2.5	23	82	8	60	61	5	0	33	1.19
48318228--48318254	12	2.2	12	100	0	54	74	0	0	25	0.83
48318230--48318303	29	2.6	30	71	16	68	67	0	4	28	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250