genome.fa.s9.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  106  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34123040--34123243	54	3.8	54	84	3	257	25	15	29	29	1.96
34124691--34124815	29	4.3	29	86	1	180	28	29	14	27	1.95
34131673--34131839	43	3.9	43	74	10	110	34	22	13	29	1.92
34135414--34135527	27	4.2	28	81	10	148	34	21	23	20	1.97
34135414--34135527	54	2.1	54	90	3	176	34	21	23	20	1.97
34137113--34137193	26	3.2	26	96	1	146	35	24	7	32	1.83
34142279--34142308	15	1.9	16	93	6	53	26	0	6	66	1.16
34143280--34143438	27	5.9	27	81	11	175	32	20	25	21	1.97
34143280--34143438	81	2.0	80	85	3	212	32	20	25	21	1.97
34143298--34143440	54	2.6	53	91	4	223	33	21	25	19	1.97
34145035--34145116	26	3.2	26	98	0	155	35	25	7	31	1.84
34145389--34145541	48	3.2	48	77	3	157	29	17	27	25	1.98
34147664--34147927	46	5.7	46	76	11	218	29	17	28	24	1.97
34153420--34153686	47	5.7	47	95	0	471	32	12	28	26	1.92
34153519--34153593	22	3.3	22	64	29	57	30	13	30	25	1.94
34153421--34153742	47	6.8	47	88	6	215	32	11	28	27	1.91
34153889--34153997	37	2.9	37	93	0	173	22	18	32	26	1.97
34155266--34155577	40	7.8	40	90	0	480	24	23	27	24	2.00
34159600--34159905	47	6.5	47	96	0	567	32	12	29	25	1.93
34159691--34159812	22	5.3	22	62	30	58	31	13	30	25	1.93
34159602--34159961	47	7.6	47	90	5	234	32	11	28	26	1.92
34160108--34160216	37	2.9	37	90	0	173	24	19	29	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34162563--34162670	46	2.5	41	80	16	114	28	13	24	33	1.94
34162562--34162656	46	2.1	46	86	7	131	30	12	22	34	1.91
34176520--34176622	44	2.5	41	84	12	122	30	15	23	31	1.95
34176518--34176611	44	2.1	44	90	7	147	32	14	20	31	1.93
34180807--34180833	14	1.9	14	100	0	54	29	3	14	51	1.60
34184872--34184924	18	3.0	18	88	2	81	13	43	30	13	1.82
34188747--34188841	34	2.9	33	78	9	104	26	20	24	29	1.99
34195039--34195081	18	2.4	18	85	11	54	11	34	32	20	1.89
34195785--34195876	46	2.0	46	97	0	175	44	8	23	22	1.81
34196118--34196177	29	2.1	29	90	0	93	33	26	18	21	1.96
34200564--34200600	16	2.3	16	90	0	56	62	8	8	21	1.49
34204723--34204752	8	3.8	8	90	0	51	6	23	16	53	1.66
34204721--34204752	16	2.0	16	100	0	64	6	25	18	50	1.70
34208346--34208385	20	2.0	20	85	9	55	32	25	15	27	1.95
34219054--34219089	15	2.3	16	90	4	56	16	0	2	80	0.83
34223123--34223177	28	2.0	28	88	0	83	30	25	21	21	1.98
34223527--34223843	27	11.4	27	80	9	226	24	21	18	35	1.96
34223515--34223821	54	5.5	54	80	9	298	25	20	18	34	1.96
34223528--34223819	81	3.5	81	77	9	298	24	20	18	35	1.95
34223601--34223676	36	2.1	36	90	0	116	21	18	22	38	1.94
34223637--34223843	81	2.6	81	85	3	265	23	20	19	36	1.95
34227103--34227128	11	2.4	11	100	0	52	38	15	0	46	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34231157--34231203	17	2.8	17	80	0	58	14	2	10	72	1.21
34233801--34233965	43	3.9	43	75	12	135	33	27	16	22	1.95
34233832--34233914	42	2.0	43	85	7	116	33	27	16	21	1.95
34234459--34234513	29	2.0	28	85	7	76	29	29	3	38	1.74
34234460--34234519	27	2.1	29	81	6	70	31	28	3	36	1.74
34238759--34238942	40	4.6	40	82	6	196	23	20	27	28	1.99
34238759--34238939	80	2.3	81	83	9	221	23	20	27	27	1.99
34238827--34238989	40	4.1	39	82	7	141	26	20	26	26	1.99
34246607--34246790	40	4.6	40	82	6	196	23	20	27	28	1.99
34246607--34246787	80	2.3	81	83	9	221	23	20	27	27	1.99
34246688--34246837	40	3.8	38	80	10	131	25	22	28	24	1.99
34252096--34252204	44	2.6	41	78	9	119	36	23	18	21	1.95
34255045--34255141	43	2.3	42	87	7	133	31	14	20	32	1.93
34261229--34261330	43	2.3	44	86	5	143	28	17	22	31	1.97
34268874--34268951	32	2.5	31	83	6	86	28	11	14	46	1.79
34268934--34269077	49	2.9	50	76	10	159	34	9	10	46	1.70
34269386--34269487	37	2.8	37	81	0	114	45	15	16	22	1.85
34275076--34275143	26	2.7	26	89	10	99	14	20	23	41	1.89
34290219--34290282	30	2.2	29	94	2	110	34	21	17	26	1.95
34291483--34291533	21	2.4	21	96	0	93	13	37	17	31	1.89
34293513--34293695	79	2.3	81	83	7	223	24	22	27	25	2.00
34293514--34293697	40	4.6	39	82	9	203	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34293565--34293730	79	2.1	79	80	6	185	27	21	25	25	1.99
34301596--34301780	40	4.6	39	83	6	212	23	22	28	25	1.99
34301596--34301778	79	2.3	81	83	7	223	24	22	27	25	2.00
34301649--34301803	79	2.0	79	83	7	199	25	20	27	26	1.99
34308797--34308878	30	2.8	30	98	1	157	32	24	17	25	1.96
34311147--34311351	53	3.8	53	76	3	203	37	18	24	20	1.94
34321723--34321876	53	2.8	55	74	2	150	38	18	24	18	1.93
34322794--34322818	11	2.3	11	100	0	50	52	8	16	24	1.70
34325784--34325966	79	2.3	81	82	7	214	25	27	21	24	1.99
34325763--34325966	40	5.1	40	81	8	220	25	27	21	25	1.99
34333445--34333486	19	2.2	19	86	0	57	47	14	9	28	1.75
34342129--34342156	12	2.3	12	100	0	56	32	42	17	7	1.77
34345408--34345487	38	2.1	38	88	0	115	20	23	27	28	1.99
34345480--34345561	43	1.9	43	97	0	155	9	25	34	30	1.88
34350567--34350633	28	2.3	29	87	2	100	29	29	14	25	1.95
34350844--34350878	16	2.2	16	94	0	61	8	11	20	60	1.57
34354182--34354206	13	1.9	13	100	0	50	44	24	8	24	1.80
34354093--34354291	101	2.0	101	86	2	283	33	24	14	27	1.94
34362199--34362255	9	5.9	9	76	15	60	35	7	21	36	1.80
34362208--34362259	11	5.1	11	73	17	58	36	11	19	32	1.87
34362197--34362259	20	3.2	20	100	0	126	36	11	19	33	1.87
34362313--34362442	24	5.4	24	87	7	192	32	20	19	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34366156--34366267	28	4.0	28	71	13	77	28	30	14	26	1.95
34366340--34366376	19	2.0	19	89	5	58	16	43	18	21	1.88
34366483--34366525	16	2.7	16	85	0	59	13	18	13	53	1.73
34373638--34373985	173	2.0	172	94	0	615	45	17	9	27	1.80
34379816--34379886	26	2.7	26	86	0	88	25	22	23	28	2.00
34386785--34386881	26	3.8	25	80	9	115	27	20	23	27	1.99
34386931--34386987	20	3.0	20	87	10	75	33	19	8	38	1.82
34389882--34390048	46	3.6	46	78	16	200	30	30	17	20	1.96
34389890--34390061	93	1.8	93	91	0	281	29	30	18	21	1.97
34397589--34397711	26	4.8	26	87	1	169	27	25	21	25	2.00
34397579--34397711	52	2.6	51	90	3	207	27	25	20	27	1.99
34397761--34397807	20	2.3	20	85	7	60	31	21	10	36	1.88
34402927--34402965	19	2.1	19	100	0	78	23	56	5	15	1.59
34409449--34409540	24	3.8	24	84	4	123	35	6	35	21	1.80
34417392--34417479	24	3.7	24	89	0	131	34	4	40	20	1.73
34420619--34420748	48	2.7	48	89	2	181	22	19	25	33	1.97
34427903--34427992	24	3.7	24	73	7	83	27	27	16	27	1.97
34447542--34447584	22	2.0	22	90	0	68	13	32	25	27	1.94
34451004--34451048	22	2.0	22	86	0	63	13	28	26	31	1.94
34454448--34454492	22	2.0	22	95	0	81	11	26	28	33	1.91
34456008--34456182	46	3.8	46	76	13	169	29	28	21	21	1.99
34456019--34456090	20	3.3	20	66	26	56	27	29	22	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34456015--34456187	93	1.9	93	88	0	265	28	28	21	21	1.99
34464873--34464926	18	2.9	17	82	15	63	62	0	25	11	1.28
34466556--34466653	52	1.9	51	87	6	144	36	13	13	36	1.83
34468760--34468791	14	2.3	15	89	10	50	46	6	0	46	1.27
34471778--34471805	8	3.5	8	100	0	56	10	0	0	89	0.49
34471772--34471817	16	3.0	15	84	6	65	13	4	2	80	0.95
34474687--34474729	21	1.9	24	86	13	65	41	6	2	48	1.43
34478413--34478448	16	2.2	16	95	0	63	47	5	13	33	1.67
34478450--34478540	44	2.0	46	82	4	114	32	5	24	37	1.78
34478709--34478741	17	1.9	17	93	0	57	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250