genome.fa.s9.2.7.7.80.10.50.1000.206.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  206  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64243938--64244029	3	30.3	3	68	22	50	29	5	2	63	1.29
64243870--64243981	12	9.3	12	67	23	58	33	2	3	59	1.28
64244584--64244624	19	2.2	19	86	0	55	41	2	7	48	1.44
64246282--64246324	3	14.3	3	95	0	77	32	2	0	65	1.06
64246354--64246394	4	10.8	4	84	10	50	19	0	4	75	0.98
64246474--64246530	24	2.3	25	77	17	64	29	1	1	66	1.12
64246493--64246526	15	2.3	15	89	0	50	32	2	2	61	1.26
64265699--64265737	20	2.0	20	95	5	71	41	0	0	58	0.98
64265701--64265737	10	3.7	10	89	10	58	37	0	0	62	0.96
64276514--64276548	18	1.9	18	88	0	52	34	17	14	34	1.90
64276587--64276777	18	10.6	18	76	9	131	39	14	11	34	1.82
64276592--64276789	36	5.5	35	75	7	148	39	13	11	34	1.81
64276586--64276705	54	2.2	55	83	5	147	39	14	12	34	1.83
64276953--64276977	6	4.2	6	100	0	50	52	16	16	16	1.76
64276958--64277067	45	2.4	45	87	0	157	46	19	14	20	1.84
64277047--64277079	6	5.5	6	92	0	57	45	15	21	18	1.85
64279756--64279813	26	2.2	26	90	0	89	36	22	5	36	1.77
64283974--64284026	26	2.0	27	85	7	74	24	15	22	37	1.92
64285509--64285566	26	2.2	26	93	0	98	36	24	5	34	1.78
64287553--64287614	31	2.0	32	84	9	83	48	4	0	46	1.23
64291034--64291066	6	5.5	6	96	0	57	81	0	3	15	0.80
64305806--64305832	7	3.9	7	100	0	54	88	0	11	0	0.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64317137--64317216	35	2.3	36	77	12	85	37	2	2	57	1.26
64320819--64320946	42	3.0	42	83	3	159	28	25	14	32	1.94
64320854--64321026	47	3.7	47	80	11	146	31	23	14	31	1.94
64321048--64321196	31	4.8	31	92	1	228	26	26	18	28	1.98
64321172--64321347	50	3.5	50	90	0	262	25	23	15	34	1.95
64324689--64324748	28	2.1	30	84	6	79	43	3	23	30	1.70
64325233--64325345	43	2.6	41	83	8	129	30	13	23	33	1.92
64336267--64336352	26	3.3	26	85	0	118	38	19	22	19	1.94
64336274--64336372	52	1.9	52	85	8	139	39	18	20	22	1.92
64339958--64340010	2	26.5	2	100	0	106	49	50	0	0	1.00
64340019--64340589	4	147.8	4	75	8	245	3	58	0	37	1.22
64340019--64340589	6	98.5	6	71	8	245	3	58	0	37	1.22
64340019--64340572	8	69.8	8	71	13	297	3	58	0	36	1.20
64343241--64343348	26	4.2	26	89	0	171	36	24	7	32	1.83
64343694--64343842	4	37.8	4	77	2	95	1	59	0	39	1.06
64343709--64343882	12	14.8	12	70	16	64	1	63	0	35	1.02
64343840--64343882	4	10.8	4	89	0	68	0	74	0	25	0.82
64347244--64347281	3	12.7	3	100	0	76	0	0	31	68	0.90
64349822--64349979	87	1.8	87	82	8	207	37	4	7	50	1.51
64351664--64351704	21	2.0	21	85	9	57	39	0	4	56	1.21
64355229--64355272	21	2.0	23	86	8	65	36	0	2	61	1.09
64355229--64355272	23	2.0	21	83	16	54	36	0	2	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64357259--64357350	18	5.1	18	72	10	73	67	1	2	29	1.09
64357260--64357350	20	4.7	20	68	14	57	67	1	2	29	1.10
64357412--64357458	19	2.5	20	80	13	55	68	4	4	23	1.26
64357525--64357610	7	12.1	7	70	19	54	60	2	4	32	1.30
64357575--64357665	14	6.7	14	73	16	77	67	0	2	30	1.03
64357548--64357660	33	3.3	35	75	18	98	63	0	3	31	1.17
64357573--64357635	23	2.5	24	82	15	74	69	0	1	28	0.97
64357647--64357689	23	1.9	22	81	13	52	65	0	6	27	1.18
64357517--64357690	12	13.7	13	66	24	72	63	1	4	31	1.22
64357673--64357736	26	2.4	26	82	10	67	51	0	3	45	1.17
64357694--64357760	24	2.8	24	76	14	61	47	0	4	47	1.22
64357704--64357754	26	2.1	23	82	10	57	49	0	5	45	1.26
64359107--64359152	21	2.1	21	81	18	51	71	4	2	21	1.14
64363324--64363392	35	2.0	35	100	0	138	17	50	11	20	1.76
64364140--64364200	3	19.3	3	83	9	61	34	0	1	63	1.04
64364140--64364200	21	2.9	21	81	13	72	34	0	1	63	1.04
64364295--64364330	3	12.0	3	93	0	63	33	2	0	63	1.08
64364439--64364532	47	2.0	47	100	0	188	23	17	12	46	1.82
64364566--64364620	22	2.5	23	77	13	62	43	0	3	52	1.18
64368017--64368081	33	2.0	33	90	0	103	46	12	3	38	1.57
64369294--64369337	22	2.0	22	86	0	61	47	20	4	27	1.69
64370929--64370968	19	2.1	19	100	0	80	52	10	15	22	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64371648--64371831	92	2.0	92	98	0	359	23	23	9	43	1.82
64378073--64378114	21	2.0	21	86	9	59	76	16	4	2	1.07
64380841--64380881	13	3.0	14	82	13	50	46	0	0	53	1.00
64380859--64380888	13	2.2	14	94	5	53	56	0	0	43	0.99
64383577--64383625	14	3.2	15	82	8	55	26	6	4	63	1.36
64385296--64385334	17	2.2	19	86	9	55	56	0	0	43	0.99
64387630--64387695	19	3.3	19	72	12	60	40	0	10	48	1.38
64387626--64387709	41	2.1	41	93	4	145	35	0	8	55	1.30
64389015--64389150	56	2.4	56	92	0	227	27	16	25	31	1.96
64389015--64389179	56	2.9	56	87	3	172	26	16	26	30	1.96
64390527--64390569	18	2.3	19	92	4	70	44	0	13	41	1.44
64392732--64392773	21	2.0	21	95	0	75	35	26	19	19	1.95
64393485--64393577	28	3.3	29	72	10	68	61	2	6	30	1.33
64393862--64393916	18	3.0	18	82	10	58	43	1	0	54	1.10
64393860--64393916	19	3.0	20	82	10	66	43	1	0	54	1.10
64394893--64394928	18	2.0	18	100	0	72	22	22	16	38	1.93
64401519--64401550	16	2.0	16	100	0	64	18	18	18	43	1.88
64403982--64404038	26	2.2	26	90	0	87	26	10	19	43	1.83
64410752--64410786	6	5.5	6	87	12	52	65	0	20	14	1.26
64410690--64410819	63	2.1	62	82	8	156	50	6	16	26	1.69
64410822--64410862	16	2.6	16	96	0	73	46	9	14	29	1.77
64417238--64417354	58	2.0	56	83	8	146	41	2	5	50	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64417404--64417433	16	1.9	16	93	6	53	20	26	0	53	1.46
64418516--64418559	23	1.9	23	86	9	63	25	4	43	27	1.74
64440926--64440988	31	2.0	31	100	0	126	58	3	15	22	1.51
64444412--64444488	39	2.0	39	97	0	145	41	9	15	33	1.79
64448445--64448478	12	2.8	12	81	0	50	29	11	0	58	1.33
64461360--64461860	44	11.5	44	66	11	278	35	22	23	18	1.96
64461319--64461952	86	7.3	87	85	3	780	34	22	23	19	1.96
64461319--64461879	174	3.2	174	90	2	842	34	22	23	19	1.96
64461319--64461949	261	2.4	261	86	2	878	34	22	23	19	1.97
64461319--64461946	174	3.6	173	88	2	816	34	22	23	19	1.96
64463337--64463405	25	2.7	26	80	8	79	30	7	1	60	1.32
64464140--64464253	47	2.4	48	81	11	137	28	14	2	53	1.55
64479274--64479303	13	2.4	13	94	5	53	56	3	6	33	1.42
64486341--64486410	29	2.4	29	85	0	86	42	17	17	22	1.88
64486885--64486922	9	4.1	9	86	6	58	60	0	2	36	1.11
64489499--64489549	13	3.9	13	75	10	50	39	13	5	41	1.69
64489541--64489585	23	1.9	24	86	13	67	40	11	6	42	1.67
64493413--64493446	16	2.1	16	88	0	50	50	14	17	17	1.79
64496243--64496283	21	2.0	21	90	0	64	29	21	29	19	1.98
64498186--64498219	16	2.1	16	88	0	50	50	14	17	17	1.79
64505487--64505543	29	2.0	29	86	6	80	35	1	7	56	1.37
64505704--64505752	20	2.5	20	82	0	62	24	22	10	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64510168--64510212	9	4.8	9	78	10	54	68	2	0	28	1.01
64513043--64513084	17	2.5	17	77	11	50	64	0	2	33	1.07
64513876--64513983	26	4.2	26	93	0	189	32	7	24	36	1.83
64515461--64515513	26	2.0	26	85	7	72	37	22	15	24	1.92
64517719--64517748	13	2.2	14	94	5	53	46	0	0	53	1.00
64523529--64523599	28	2.7	27	73	8	74	32	4	4	59	1.36
64535538--64535587	25	2.0	25	100	0	100	52	12	24	12	1.72
64538624--64538671	19	2.5	19	93	0	78	35	12	10	41	1.77
64539189--64539274	27	3.2	26	88	8	127	38	22	24	15	1.92
64539189--64539299	27	4.1	27	85	5	118	36	22	22	18	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250