genome.fa.s9.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  177  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56376526--56376715	41	4.3	43	72	14	145	34	18	20	26	1.96
56376526--56376861	45	7.5	43	69	14	166	35	18	19	26	1.95
56376496--56376853	137	2.6	137	90	0	556	34	18	18	27	1.95
56377460--56377484	13	1.9	13	100	0	50	0	16	0	84	0.63
56379227--56379690	131	3.6	131	84	4	586	26	17	20	35	1.95
56386279--56386397	60	2.0	60	94	0	211	54	13	0	31	1.39
56386563--56386596	14	2.5	14	90	4	52	0	35	0	64	0.94
56387572--56387601	15	2.0	15	93	0	51	20	0	3	76	0.92
56388928--56388973	23	2.0	24	83	12	60	21	6	2	69	1.22
56393010--56393034	13	1.9	13	100	0	50	40	4	24	32	1.73
56395544--56395704	43	3.8	42	76	10	155	32	24	16	26	1.96
56395539--56395691	42	3.6	43	73	14	145	32	24	16	26	1.97
56397873--56397975	18	5.4	18	70	13	71	36	22	25	15	1.93
56397893--56397957	19	3.2	21	73	20	75	40	18	26	15	1.90
56397875--56397975	39	2.6	39	93	0	175	37	21	25	14	1.92
56399194--56399228	16	2.1	18	89	10	56	37	14	2	45	1.59
56401209--56401355	46	3.0	46	79	9	141	31	28	15	23	1.95
56401378--56401557	31	5.8	31	88	5	265	25	27	19	27	1.99
56401378--56401557	93	1.9	93	91	4	292	25	27	19	27	1.99
56402908--56402971	18	3.4	18	75	12	65	37	25	23	14	1.92
56407202--56407562	40	9.0	40	94	0	614	19	23	29	26	1.98
56407554--56407650	43	2.3	43	83	0	122	15	21	30	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56407769--56407823	25	2.2	25	90	6	85	29	12	30	27	1.93
56407807--56407902	28	3.4	28	70	5	95	19	18	30	31	1.96
56407805--56407932	56	2.3	56	95	0	238	20	17	32	29	1.96
56407834--56407930	28	3.5	27	66	16	72	20	16	32	29	1.95
56417790--56417897	26	4.2	26	91	0	171	34	7	22	36	1.82
56421684--56421932	50	4.8	50	85	4	284	20	29	24	26	1.99
56421683--56421932	100	2.4	104	88	6	357	20	29	24	26	1.99
56422027--56422058	13	2.5	13	94	0	55	56	12	0	31	1.37
56422270--56422327	30	1.9	30	89	0	89	31	24	3	41	1.71
56429254--56429502	50	4.8	50	85	4	284	20	29	24	26	1.99
56429253--56429502	100	2.4	104	88	6	357	20	29	24	26	1.99
56429597--56429628	13	2.5	13	94	0	55	56	12	0	31	1.37
56430939--56430980	22	1.9	22	90	0	66	64	2	7	26	1.32
56431605--56431641	19	2.0	19	94	5	67	86	0	13	0	0.57
56431607--56431640	14	2.4	14	86	13	52	88	0	11	0	0.52
56431991--56432015	12	2.1	12	100	0	50	16	8	36	40	1.77
56433273--56433358	20	4.2	20	72	14	68	33	2	5	58	1.35
56433949--56433990	15	2.8	15	85	0	57	33	2	19	45	1.63
56436153--56436183	9	3.3	9	91	8	53	19	3	0	77	0.90
56437427--56437554	23	5.5	23	67	19	70	35	4	3	57	1.36
56437502--56437560	25	2.3	26	77	8	68	37	3	1	57	1.25
56437506--56437564	14	4.1	15	75	18	54	35	3	1	59	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56437577--56437601	13	1.9	13	100	0	50	28	8	8	56	1.57
56437791--56437830	7	5.4	7	88	5	53	32	0	2	65	1.06
56437793--56437837	16	2.9	15	93	6	72	31	0	2	66	1.04
56447052--56447783	73	9.5	73	74	15	584	27	17	22	32	1.96
56447326--56447353	14	2.0	14	100	0	56	14	21	7	57	1.61
56447123--56448070	239	4.0	239	97	0	1756	27	17	21	33	1.96
56447563--56447591	14	2.1	14	100	0	58	13	13	6	65	1.45
56447804--56447831	14	2.0	14	100	0	56	14	21	7	57	1.61
56447837--56448062	75	3.0	73	85	4	310	28	17	21	32	1.96
56448039--56448080	14	2.9	15	85	7	59	14	14	7	64	1.48
56448042--56448091	14	3.6	14	81	7	57	20	12	4	64	1.43
56448838--56448984	30	4.9	30	88	2	183	27	46	4	21	1.69
56449444--56449571	23	5.5	23	67	19	70	35	4	3	57	1.36
56449519--56449578	25	2.4	26	77	8	70	36	3	1	58	1.25
56449811--56449855	8	5.5	8	86	5	54	28	0	4	66	1.11
56454337--56454367	9	3.3	9	91	8	53	19	3	0	77	0.90
56455125--56455256	58	2.3	55	82	10	151	42	2	3	52	1.29
56455428--56455463	16	2.2	16	90	0	54	30	22	5	41	1.76
56460923--56460988	31	2.2	29	80	12	80	60	4	4	30	1.37
56461508--56461559	27	2.0	25	85	7	68	50	11	11	26	1.73
56461889--56461931	21	2.0	22	90	9	70	62	4	2	30	1.28
56465762--56465923	38	4.3	38	90	1	236	22	22	24	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56465762--56465923	76	2.1	76	93	0	270	22	22	24	30	1.99
56467554--56467596	18	2.3	19	88	4	61	34	6	0	58	1.25
56468218--56468269	22	2.3	22	93	3	86	3	15	21	59	1.52
56468812--56468854	12	3.3	12	84	12	50	60	0	0	39	0.97
56468812--56468853	13	3.2	13	86	10	50	61	0	0	38	0.96
56468885--56468917	12	2.6	13	80	9	50	57	0	0	42	0.98
56468844--56468905	20	3.1	20	73	13	56	53	0	1	45	1.10
56468860--56468959	32	3.1	32	80	11	116	59	0	0	41	0.98
56468926--56468958	10	3.4	10	91	8	59	60	0	0	39	0.97
56469651--56469703	23	2.2	24	83	9	65	9	18	11	60	1.57
56470617--56470678	29	2.2	28	85	2	79	20	16	27	35	1.94
56473860--56473904	23	1.9	24	90	4	74	8	28	0	62	1.25
56478359--56478392	11	3.0	12	87	12	54	32	0	0	67	0.91
56478509--56478568	30	2.0	30	90	0	93	56	13	3	26	1.52
56481837--56482038	72	2.8	71	84	3	251	23	25	30	20	1.99
56483671--56484130	159	2.9	159	86	1	636	25	25	12	36	1.91
56485266--56485304	4	9.8	4	100	0	78	51	25	0	23	1.49
56485302--56485388	4	21.8	4	100	0	174	50	25	24	0	1.49
56488161--56488201	18	2.3	18	95	0	73	43	4	36	14	1.67
56491839--56491953	30	3.8	30	86	2	144	27	47	4	20	1.68
56492524--56492576	16	3.5	15	77	15	56	37	5	0	56	1.23
56492449--56492657	25	8.5	25	64	19	91	34	6	3	55	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56492587--56492626	21	1.9	21	89	0	62	30	2	7	60	1.38
56492807--56492841	16	2.3	15	90	5	52	31	2	2	62	1.24
56502697--56503692	73	13.0	73	75	12	790	27	16	21	33	1.95
56503193--56503221	14	2.1	14	100	0	58	13	13	6	65	1.45
56502967--56503700	239	3.1	239	95	0	1333	27	16	20	35	1.94
56503434--56503461	14	2.0	14	100	0	56	14	21	7	57	1.61
56503303--56503611	165	1.9	165	88	2	469	28	16	21	33	1.95
56503467--56503692	75	3.0	73	84	5	301	28	16	22	32	1.96
56503669--56503710	14	2.9	15	85	7	59	14	14	7	64	1.48
56503672--56503721	14	3.6	14	81	7	57	20	12	4	64	1.43
56504467--56504581	30	3.8	30	84	2	126	26	47	4	20	1.69
56505071--56505202	23	5.5	23	71	13	81	36	6	2	54	1.40
56505136--56505209	25	2.8	26	78	10	80	37	8	1	52	1.40
56505192--56505260	22	3.0	22	78	16	68	28	2	7	60	1.38
56505169--56505234	30	2.2	29	83	2	78	34	6	3	56	1.40
56505438--56505472	16	2.3	15	90	5	52	31	2	2	62	1.24
56506974--56507025	20	2.9	18	78	16	54	53	0	1	44	1.11
56506972--56507051	31	2.6	31	82	3	83	53	0	3	42	1.18
56506991--56507051	31	2.0	31	86	0	86	54	0	3	42	1.17
56508688--56508742	24	2.3	24	81	6	58	21	32	20	25	1.97
56508848--56509066	25	8.8	24	71	13	113	20	25	22	32	1.98
56508927--56509060	25	5.4	24	78	8	119	18	26	22	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56510460--56510616	28	5.6	28	73	11	126	26	16	31	25	1.97
56510460--56510621	56	2.9	56	83	9	197	27	16	30	25	1.97
56510664--56510762	32	3.1	32	82	2	110	38	10	22	29	1.87
56514119--56514188	23	3.0	23	87	0	95	42	20	18	18	1.89
56526353--56526385	7	4.9	7	96	3	59	30	27	27	15	1.96
56526589--56526749	78	2.1	79	82	5	193	33	8	6	51	1.58
56527175--56527226	14	3.7	14	73	0	59	34	5	0	59	1.21
56527807--56527832	12	2.2	12	100	0	52	23	0	7	69	1.14
56535435--56535467	16	2.1	16	100	0	66	18	18	36	27	1.94
56537493--56537555	23	2.7	24	78	7	85	12	6	34	46	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250