genome.fa.s9.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  35  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10445526--10445696	93	1.8	93	92	0	288	29	28	20	21	1.98
10445521--10445693	46	3.7	46	79	10	199	30	27	20	21	1.98
10452985--10453096	43	2.6	43	86	10	158	31	27	17	23	1.97
10457636--10457889	87	3.0	86	83	4	255	29	25	21	24	1.99
10457636--10457891	43	6.0	43	75	6	223	28	25	21	24	1.99
10457705--10457891	87	2.2	87	88	1	270	27	25	20	26	1.99
10457749--10457908	43	3.7	43	81	9	180	28	23	20	27	1.99
10458807--10458844	19	2.1	18	85	9	51	52	0	7	39	1.31
10474135--10474165	15	2.1	15	93	0	53	32	9	0	58	1.31
10474198--10474239	22	1.9	22	90	0	66	40	33	7	19	1.78
10474534--10474585	25	2.1	25	96	0	95	42	21	7	28	1.80
10474744--10474819	39	2.0	38	85	7	102	40	22	6	30	1.79
10474997--10475272	41	6.8	41	85	3	317	20	22	20	36	1.95
10498133--10498171	20	2.0	20	85	10	53	7	28	5	58	1.47
10508647--10508708	31	2.0	32	93	3	108	48	16	3	32	1.62
10509549--10509583	16	2.2	16	90	5	54	25	8	0	65	1.21
10510353--10510398	21	2.1	22	88	4	67	36	0	13	50	1.41
10519519--10519701	40	4.5	40	82	2	215	34	27	14	23	1.94
10519519--10519705	80	2.3	80	84	3	241	34	26	14	23	1.94
10526592--10526779	40	4.7	40	83	2	207	34	26	13	25	1.94
10539426--10539525	18	5.6	18	82	4	112	34	15	13	38	1.85
10539426--10539535	54	2.0	54	87	3	159	33	15	13	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10539664--10539771	51	2.1	53	82	3	130	43	18	17	20	1.88
10541069--10541110	21	2.0	22	95	4	77	42	4	2	50	1.36
10541065--10541111	21	2.2	22	84	3	69	44	4	2	48	1.34
10547876--10547913	15	2.5	15	100	0	76	13	31	47	7	1.71
10547876--10547920	15	3.1	14	90	6	56	11	33	46	8	1.70
10551407--10551579	46	3.7	46	76	13	192	21	20	27	29	1.98
10551404--10551574	93	1.8	93	92	0	288	21	21	28	28	1.98
10560161--10560332	93	1.8	93	94	0	308	27	29	21	21	1.99
10560155--10560329	46	3.8	46	79	13	205	29	28	21	21	1.98
10566014--10566077	30	2.1	30	83	11	78	26	29	25	18	1.98
10571294--10571475	40	4.6	40	79	10	185	25	28	20	25	1.99
10571300--10571475	79	2.2	80	81	8	198	25	28	21	25	1.99
10576485--10576573	43	2.1	43	85	4	117	24	19	24	31	1.98
10587956--10588038	28	3.0	28	89	1	123	27	10	25	36	1.89
10596025--10596178	28	5.5	28	89	1	211	27	11	26	34	1.91
10599096--10599157	22	2.7	23	85	5	81	29	22	11	37	1.89
10600273--10600403	69	1.9	70	84	7	178	55	9	4	30	1.51
10600904--10600936	17	1.9	17	93	0	57	57	0	6	36	1.23
10600932--10600979	24	2.1	22	85	14	62	64	2	4	29	1.23
10604077--10604188	27	4.2	26	85	7	143	16	24	23	36	1.94
10604077--10604188	54	2.1	54	89	3	172	16	24	23	36	1.94
10605629--10605670	12	3.4	12	83	9	50	21	0	33	45	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10616133--10616217	45	1.9	43	83	4	107	51	1	21	25	1.55
10630848--10630915	31	2.2	31	89	0	100	23	29	29	17	1.97
10630975--10631044	30	2.3	31	87	2	97	21	27	38	12	1.90
10639825--10640000	41	4.3	40	76	12	144	33	25	15	25	1.95
10639908--10640000	40	2.3	40	83	7	127	34	26	15	23	1.94
10640410--10640475	29	2.3	28	84	5	78	30	24	1	43	1.63
10642576--10642637	22	2.9	22	76	11	65	43	8	1	46	1.42
10643628--10643673	24	1.9	24	81	0	56	67	2	2	28	1.14
10645207--10645235	14	2.1	14	100	0	58	34	6	20	37	1.80
10650287--10650364	29	2.9	25	77	19	77	26	0	0	73	0.84
10650300--10650418	3	41.7	3	66	21	51	23	5	2	68	1.21
10650310--10650361	5	10.8	5	83	6	63	30	0	0	69	0.89
10650323--10650361	20	2.0	20	100	0	78	33	0	0	66	0.92
10650286--10650420	5	26.8	5	71	19	52	22	4	2	70	1.17
10650387--10650415	15	1.9	15	100	0	58	20	3	6	68	1.27
10650503--10650567	21	3.1	21	83	12	73	23	6	1	69	1.20
10650661--10650694	14	2.4	14	85	5	50	26	0	2	70	1.01
10653331--10653379	25	2.0	24	96	4	89	40	26	8	24	1.83
10658236--10658302	17	3.9	17	78	17	59	62	1	4	31	1.24
10658368--10658486	11	10.8	11	68	26	51	63	2	3	31	1.24
10658383--10658445	20	3.0	20	75	13	65	63	0	4	31	1.15
10658380--10658486	14	7.5	14	69	21	55	62	1	3	31	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10666620--10666803	39	4.6	41	82	11	206	24	22	27	25	2.00
10666620--10666803	79	2.3	80	83	8	225	24	22	27	25	2.00
10666673--10666836	78	2.1	79	83	7	201	26	21	27	25	1.99
10674570--10674753	39	4.6	41	82	11	206	24	22	27	25	2.00
10674570--10674753	79	2.3	80	83	8	225	24	22	27	25	2.00
10680714--10680743	14	2.1	14	93	0	51	16	0	36	46	1.47
10698135--10698257	39	3.2	39	95	0	219	26	18	26	29	1.98
10698135--10698282	39	3.8	39	90	1	217	24	20	27	27	1.99
10707461--10707528	20	3.9	17	78	19	61	63	1	4	30	1.23
10707569--10707711	24	6.4	22	67	19	55	62	2	3	30	1.26
10707607--10707711	17	7.3	14	72	19	67	62	1	3	31	1.23
10707649--10707700	8	6.5	8	77	16	54	61	3	1	32	1.25
10719931--10720081	28	5.4	28	91	1	214	26	11	27	33	1.92
10734103--10734136	17	2.0	17	88	0	50	52	20	8	17	1.71
10735648--10735689	21	2.0	21	85	0	57	35	0	9	54	1.33
10736677--10736748	37	1.9	37	91	0	117	20	37	23	18	1.94
10737718--10737742	13	1.9	13	100	0	50	32	0	8	60	1.26
10745703--10746030	180	1.8	180	92	2	552	32	19	7	39	1.81
10746367--10746398	16	2.0	16	93	0	55	34	18	0	46	1.49
10746598--10746936	50	6.7	50	77	5	292	32	26	15	25	1.95
10746607--10746884	150	1.9	150	87	1	414	31	27	15	25	1.95
10747561--10747619	30	2.0	30	86	0	82	25	27	8	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10749524--10749583	15	4.0	15	88	0	84	56	13	16	13	1.67
10751634--10752024	50	7.7	50	76	4	302	30	25	18	24	1.98
10751637--10751821	101	1.8	101	82	0	235	29	23	21	25	1.99
10751645--10752026	151	2.5	151	84	1	469	31	25	18	24	1.98
10751796--10751977	101	1.8	101	91	2	303	30	26	18	23	1.98
10752379--10752425	19	2.3	20	82	10	60	48	14	0	36	1.44
10758518--10758548	12	2.7	12	95	5	55	74	0	6	19	1.03
10760558--10760662	55	1.9	55	86	0	147	15	31	26	26	1.96
10760560--10760679	55	2.2	55	81	0	141	15	32	28	23	1.95
10765271--10765313	21	2.0	21	95	0	77	25	18	37	18	1.94
10767882--10767913	15	2.2	15	94	5	57	3	43	0	53	1.16
10770799--10770858	29	2.1	29	100	0	120	23	10	3	63	1.40
10773958--10773983	3	8.7	3	100	0	52	34	0	65	0	0.93
10774505--10774540	18	2.1	17	89	5	54	61	0	8	30	1.26
10785605--10785709	40	2.7	39	88	4	140	22	17	24	35	1.95
10787340--10787376	2	18.5	2	100	0	74	0	0	48	51	1.00
10789633--10789700	34	2.0	34	94	0	118	17	17	5	58	1.57
10791200--10791511	44	6.7	46	73	11	226	28	19	30	21	1.98
10798685--10798946	44	5.7	44	74	14	217	28	19	29	22	1.98
10798732--10798996	47	5.6	48	74	12	210	30	19	28	21	1.98
10801400--10801442	17	2.5	17	96	0	77	23	20	30	25	1.99
10807110--10807264	52	3.0	51	78	4	148	29	29	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10807110--10807246	52	2.6	53	80	4	152	28	29	17	24	1.97
10809899--10809941	22	1.9	23	81	13	54	44	2	2	51	1.27
10813533--10813568	14	2.6	14	90	0	63	52	8	19	19	1.70
10814930--10814988	30	2.0	30	83	12	77	71	6	3	18	1.23
10821824--10822042	3	74.3	3	67	11	96	31	7	1	59	1.36
10821984--10822038	20	2.8	20	91	0	83	30	5	1	61	1.29
10822205--10822416	3	71.7	3	70	12	136	30	7	1	60	1.33
10822253--10822332	37	2.2	37	84	8	101	27	7	0	65	1.20
10822228--10822332	31	3.5	29	77	13	83	28	8	0	62	1.24
10834855--10834933	37	2.1	37	88	0	113	24	31	18	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250