genome.fa.s9.2.7.7.80.10.50.1000.224.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  224  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68965520--68965650	56	2.3	56	81	9	140	32	2	0	64	1.12
68965850--68965895	23	2.0	23	87	4	67	21	6	13	58	1.57
68972797--68972837	21	2.0	21	90	0	64	29	21	29	19	1.98
68984565--68984639	29	2.5	30	77	18	77	60	4	4	32	1.34
68991781--68991833	3	17.7	3	96	0	97	66	0	0	33	0.92
68994456--68994496	21	2.0	21	90	0	64	19	29	21	29	1.98
68997552--68997583	12	2.5	13	90	10	57	28	0	0	71	0.86
69003302--69003360	23	2.5	23	91	8	93	49	10	3	37	1.54
69004925--69005263	129	2.6	132	76	5	312	36	20	17	25	1.94
69005568--69005664	29	3.7	26	72	18	76	63	0	7	28	1.20
69010102--69010142	21	2.0	21	90	0	64	19	29	21	29	1.98
69023925--69023954	14	2.1	14	100	0	60	43	13	0	43	1.43
69030086--69030136	21	2.4	21	71	12	50	54	0	5	39	1.24
69030158--69030208	19	2.6	19	84	9	59	54	1	1	41	1.22
69030158--69030211	20	2.7	21	80	11	60	51	1	3	42	1.30
69030438--69030500	20	3.3	19	84	8	74	42	4	1	50	1.32
69030438--69030515	38	2.0	40	82	9	99	42	3	1	52	1.27
69030448--69030515	19	3.5	19	78	9	66	42	1	1	54	1.18
69030537--69030582	19	2.4	20	80	16	53	34	4	4	56	1.39
69032431--69032472	14	2.9	14	82	10	50	64	0	0	35	0.94
69038784--69038828	22	2.0	22	95	0	81	42	17	15	24	1.88
69040795--69040875	31	2.7	30	79	7	83	53	7	6	33	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69042541--69042578	20	1.9	20	88	0	58	28	0	21	50	1.49
69047312--69047422	47	2.4	47	81	6	136	36	22	15	26	1.94
69048186--69048265	4	18.8	4	72	12	61	6	26	3	63	1.35
69049016--69049229	106	2.0	106	98	0	410	35	20	10	34	1.87
69053940--69054044	39	2.7	38	92	4	167	21	22	20	34	1.97
69057797--69057970	47	3.8	47	69	19	161	36	21	15	25	1.93
69057835--69058012	88	2.0	88	100	0	356	35	21	16	26	1.95
69057870--69058009	47	3.1	47	66	26	138	33	22	18	25	1.97
69058759--69058838	4	18.8	4	72	12	61	6	26	3	63	1.35
69062257--69062285	14	2.0	15	93	6	51	6	17	6	68	1.34
69065340--69065368	14	2.1	14	100	0	58	34	13	13	37	1.85
69066226--69066290	28	2.2	30	86	5	89	66	4	3	26	1.26
69066277--69066320	19	2.3	19	80	7	54	70	2	4	22	1.17
69071427--69071459	3	11.0	3	100	0	66	33	0	0	66	0.92
69083120--69083189	29	2.4	28	76	6	68	21	2	24	51	1.61
69083877--69084016	39	3.6	39	88	0	199	37	24	25	12	1.90
69083917--69084014	19	5.1	19	72	19	78	39	24	24	11	1.88
69083904--69083998	18	4.8	20	67	22	58	41	23	24	11	1.87
69087058--69087111	26	2.1	26	100	0	108	37	14	16	31	1.89
69088102--69088285	46	4.0	46	96	0	305	21	23	15	39	1.91
69090340--69090373	17	2.0	17	94	0	59	0	26	0	73	0.83
69097083--69097142	28	2.1	28	87	3	84	56	5	0	38	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69097503--69097530	3	9.3	3	100	0	56	35	0	0	64	0.94
69110062--69110108	23	2.0	24	83	4	60	36	6	4	53	1.46
69110182--69110248	34	2.0	34	100	0	134	44	14	2	37	1.61
69116330--69116393	6	10.7	6	91	0	101	46	20	0	32	1.51
69118850--69118879	15	2.0	15	93	0	51	76	3	0	20	0.92
69122343--69122616	46	6.0	46	91	0	370	40	14	23	20	1.90
69128545--69128573	12	2.4	12	100	0	58	65	6	0	27	1.18
69134689--69134718	15	2.0	15	100	0	60	26	20	6	46	1.75
69136268--69136302	17	2.0	18	88	5	54	54	5	0	40	1.24
69137937--69137981	22	2.0	23	83	12	58	40	2	13	44	1.56
69139944--69140084	70	2.0	70	90	0	219	35	19	11	34	1.87
69140060--69140126	33	2.0	33	100	0	134	40	20	14	23	1.90
69147693--69147789	48	2.0	48	100	0	194	38	16	14	30	1.89
69163665--69163728	6	10.2	6	74	15	58	73	1	0	25	0.92
69163680--69163723	20	2.1	21	91	4	72	70	2	0	27	0.99
69163691--69163730	20	2.0	20	90	0	62	75	5	0	20	0.99
69163748--69163804	9	6.6	9	81	4	55	28	5	21	45	1.73
69164618--69164653	11	3.3	11	88	0	54	66	0	5	27	1.13
69164618--69164665	22	2.2	22	84	0	60	62	2	10	25	1.38
69169651--69169685	17	2.1	17	100	0	70	40	5	25	28	1.78
69168098--69171109	630	4.8	614	84	6	3390	35	16	14	33	1.90
69180970--69181052	18	4.6	18	70	5	62	40	0	2	56	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69180970--69181003	17	2.0	17	88	0	50	41	0	0	58	0.98
69180999--69181035	19	2.0	18	89	5	56	40	0	5	54	1.24
69182702--69182726	9	2.8	9	100	0	50	60	0	0	40	0.97
69195453--69195518	27	2.4	27	92	0	114	33	19	22	24	1.97
69195403--69195675	25	10.8	25	74	11	132	32	19	26	21	1.97
69198756--69198784	13	2.1	14	93	6	51	51	0	3	44	1.18
69211273--69211308	13	2.8	14	84	16	51	27	25	0	47	1.52
69211260--69211300	18	2.2	19	87	12	59	29	24	0	46	1.53
69211462--69211527	21	3.0	22	78	8	89	42	24	18	15	1.88
69211898--69211955	15	3.8	15	88	2	89	51	12	0	36	1.39
69211901--69211959	30	2.0	28	93	6	100	55	11	0	32	1.36
69212950--69212977	13	2.2	13	100	0	56	0	14	7	78	0.95
69228092--69228224	68	2.0	68	93	0	230	43	6	21	28	1.77
69230192--69230222	15	2.0	16	93	6	55	25	0	0	74	0.82
69233116--69233257	72	2.0	71	91	1	230	44	4	15	35	1.68
69233591--69237797	404	10.5	393	73	12	1826	38	12	13	35	1.82
69239930--69239987	30	1.9	30	85	0	80	43	3	22	31	1.70
69240200--69240230	13	2.4	13	94	0	53	32	0	12	54	1.38
69240325--69240567	50	4.8	50	91	0	378	26	22	30	20	1.98
69250425--69250487	31	2.0	31	93	0	108	46	14	6	33	1.70
69250903--69250946	19	2.2	20	88	4	63	34	0	9	56	1.31
69250914--69250955	19	2.2	19	83	8	50	33	0	11	54	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69251030--69251077	23	2.0	24	84	11	64	39	0	2	58	1.10
69252128--69252227	47	2.2	46	87	8	143	29	13	20	38	1.90
69252577--69252636	29	2.0	30	87	3	86	50	13	8	28	1.70
69263359--69263440	28	2.9	28	77	0	92	29	20	12	37	1.89
69268783--69268845	28	2.2	28	91	0	99	31	30	6	31	1.83
69269970--69270001	14	2.3	14	100	0	64	50	0	6	43	1.27
69271817--69271854	18	2.3	16	83	16	51	34	7	7	50	1.61
69274152--69274222	28	2.5	27	78	13	72	15	11	8	64	1.48
69275466--69275517	20	2.5	20	84	3	77	48	11	13	26	1.77
69276355--69276409	20	2.7	20	81	16	67	40	1	1	56	1.21
69276301--69276390	38	2.5	35	74	13	85	36	2	2	58	1.22
69276346--69276412	26	2.6	26	79	9	66	37	1	1	59	1.16
69276690--69276727	13	2.8	14	84	4	51	76	0	7	15	1.01
69277103--69277145	22	2.0	22	100	0	86	32	0	32	34	1.58
69277808--69277904	45	2.2	45	86	3	133	21	16	21	40	1.91
69277888--69277922	18	1.9	18	88	0	52	17	25	17	40	1.90
69283235--69283284	14	3.6	14	80	0	55	34	0	22	44	1.53
69283551--69283583	17	1.9	17	93	0	57	48	12	3	36	1.56
69291714--69291823	34	3.2	34	82	0	139	48	14	10	26	1.77
69291791--69291904	55	2.1	55	89	0	174	50	13	7	28	1.68
69291937--69292044	55	2.0	55	84	0	144	51	12	4	30	1.60
69295421--69295451	15	2.1	14	94	5	53	54	6	3	35	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69295438--69295506	21	3.4	20	71	16	70	55	7	1	36	1.37
69295470--69295547	30	2.6	32	76	19	78	53	7	0	38	1.30
69304178--69304202	12	2.1	12	100	0	50	24	36	24	16	1.94
69304364--69304456	9	10.3	9	88	0	132	34	24	9	31	1.88
69304364--69304456	27	3.4	27	92	0	159	34	24	9	31	1.88
69305591--69305624	15	2.4	14	90	5	50	67	5	20	5	1.33
69312892--69313002	53	2.1	53	98	1	215	13	20	13	52	1.74
69330137--69330190	24	2.3	23	81	15	67	38	1	0	59	1.08
69336494--69336559	32	2.1	32	100	0	132	39	12	3	45	1.57
69337538--69337594	27	2.1	29	87	9	84	50	0	5	43	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250