genome.fa.s9.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  115  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36911448--36911662	45	4.9	44	85	2	279	23	22	28	25	1.99
36920212--36920264	27	2.0	27	81	7	63	52	15	5	26	1.64
36921059--36921114	26	2.2	26	93	0	94	30	7	25	37	1.82
36926487--36926562	26	2.9	26	92	0	125	39	11	17	31	1.85
36938042--36938152	40	2.8	40	83	1	98	25	28	23	22	1.99
36938065--36938209	40	3.6	40	84	4	184	24	26	24	25	2.00
36946064--36946231	40	4.2	40	83	4	106	25	27	23	23	2.00
36946087--36946231	40	3.6	40	85	4	193	23	26	24	25	2.00
36949619--36949880	56	4.7	56	91	0	391	27	16	23	32	1.96
36950147--36950190	21	2.0	22	87	12	65	50	4	15	29	1.64
36955962--36956042	31	2.6	31	94	0	144	23	25	18	32	1.97
36956260--36956330	25	2.8	25	89	2	106	25	22	25	26	2.00
36956463--36956510	25	1.9	25	91	0	78	29	14	22	33	1.94
36959672--36959712	17	2.3	17	87	8	55	36	26	14	21	1.93
36960972--36961054	25	3.3	25	85	6	89	26	24	21	27	1.99
36960985--36961054	25	2.8	25	91	2	104	27	24	24	24	2.00
36961172--36961219	25	1.9	25	86	0	69	29	12	22	35	1.91
36963389--36963413	12	2.1	12	100	0	50	56	8	0	36	1.29
36965805--36965829	12	2.1	12	100	0	50	28	32	24	16	1.96
36966006--36966069	32	2.0	32	100	0	128	28	18	9	43	1.81
36977639--36977673	17	2.1	17	100	0	70	31	34	0	34	1.58
36982893--36982970	28	2.8	28	82	1	95	25	14	29	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36982898--36983004	28	3.8	27	77	9	90	25	15	31	27	1.96
36987341--36987381	18	2.3	18	95	0	73	24	14	19	41	1.89
36988754--36988831	40	2.0	40	85	12	108	26	8	12	51	1.70
36988846--36988889	23	1.9	23	95	0	79	38	15	4	40	1.68
36996613--36996732	43	2.8	43	80	1	125	24	28	20	27	1.99
36997525--36997554	15	2.1	15	93	6	53	36	26	6	30	1.82
37004177--37004236	27	2.3	26	85	2	75	35	20	23	21	1.96
37009804--37009926	57	2.2	57	100	0	246	29	32	16	21	1.95
37009806--37009894	27	3.2	27	65	20	74	31	31	16	20	1.95
37009909--37009967	12	4.9	12	76	15	68	33	30	11	23	1.91
37013605--37013714	42	2.6	41	73	15	98	30	23	20	26	1.98
37013659--37013761	44	2.4	42	79	7	118	32	24	21	22	1.98
37021878--37021982	45	2.3	45	90	3	156	38	20	13	28	1.90
37022887--37022968	25	3.3	25	77	0	92	31	19	21	26	1.97
37026304--37026655	71	5.1	71	61	20	186	40	7	5	46	1.55
37026170--37026732	138	4.1	138	91	1	889	41	7	5	46	1.55
37026353--37026703	67	5.1	66	62	20	148	41	7	5	45	1.55
37029163--37029305	60	2.4	60	91	0	241	27	13	22	37	1.91
37042030--37042172	60	2.4	60	91	0	241	27	13	22	37	1.91
37054515--37054549	11	3.1	12	88	12	56	34	0	0	65	0.93
37054671--37054733	30	2.1	30	93	0	108	58	15	0	25	1.37
37055145--37055185	20	2.0	20	85	9	55	58	7	2	31	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37064388--37064663	51	5.5	49	81	6	297	28	26	18	26	1.98
37064380--37064567	100	1.9	100	92	2	315	29	26	19	25	1.98
37064388--37064670	150	1.9	149	91	3	471	28	27	18	25	1.98
37064388--37064671	100	2.8	99	82	4	268	28	27	18	26	1.98
37069163--37069234	32	2.2	32	82	0	90	20	19	38	20	1.93
37075689--37075727	19	2.1	19	86	13	55	0	25	2	71	0.98
37078657--37078682	7	3.7	7	100	0	52	73	11	0	15	1.11
37078774--37078815	3	14.0	3	100	0	84	33	0	0	66	0.92
37085835--37085876	20	2.1	20	95	0	75	42	4	11	40	1.63
37086045--37086160	42	2.8	42	79	8	146	31	16	23	29	1.96
37089783--37089957	43	4.1	42	77	5	147	26	14	24	34	1.93
37089783--37089878	42	2.3	43	89	5	142	27	14	22	35	1.93
37093356--37093391	19	1.9	19	88	5	56	44	11	0	44	1.39
37098892--37098949	30	2.0	29	86	3	80	37	3	27	31	1.73
37099286--37099540	55	4.8	54	77	9	233	36	17	25	21	1.95
37099293--37099493	108	1.8	110	84	4	273	33	17	25	22	1.96
37099718--37099748	16	1.9	16	93	0	53	41	0	22	35	1.54
37106568--37106626	30	2.0	30	86	0	82	40	3	27	28	1.72
37106962--37107216	55	4.8	53	79	8	261	34	17	25	21	1.95
37106969--37107169	108	1.8	110	88	4	309	32	17	26	22	1.97
37107396--37107426	16	1.9	16	93	0	53	41	0	22	35	1.54
37110192--37110284	42	2.2	43	83	9	127	29	15	25	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37123926--37123959	16	2.2	15	89	5	50	44	0	0	55	0.99
37124651--37124712	26	2.4	25	79	12	63	32	4	4	58	1.40
37134614--37134819	40	5.2	40	94	1	353	27	27	22	22	1.99
37140642--37140688	25	1.9	24	95	0	76	31	17	23	27	1.96
37146661--37146694	16	2.1	17	88	5	52	73	2	14	8	1.19
37151171--37151269	29	3.4	29	88	2	153	34	8	31	26	1.85
37151262--37151421	32	4.9	33	88	1	180	33	11	21	33	1.90
37151262--37151441	97	1.9	97	79	2	209	35	13	20	31	1.91
37151547--37151654	54	2.0	54	100	0	216	24	11	22	42	1.85
37153039--37153098	32	1.9	31	83	6	77	23	33	23	20	1.97
37154417--37154573	43	3.7	43	76	10	142	27	17	22	31	1.97
37154414--37154577	85	1.9	86	83	6	217	26	17	23	32	1.97
37155097--37155141	23	2.0	22	86	4	63	11	2	33	53	1.49
37163410--37163460	26	2.0	26	96	0	93	11	23	35	29	1.90
37163226--37163597	104	3.6	105	94	2	633	18	20	30	30	1.96
37170347--37170554	105	2.0	105	97	0	389	17	19	30	32	1.95
37170492--37170616	62	2.0	62	100	0	250	22	20	25	32	1.98
37170387--37170720	167	2.0	166	97	1	634	20	20	28	31	1.97
37170558--37170781	104	2.1	105	94	0	396	20	21	29	28	1.98
37224848--37225251	47	8.6	47	93	1	655	33	8	29	28	1.86
37226664--37226974	119	2.6	120	92	0	507	23	21	28	25	1.99
37226664--37226974	40	7.8	40	93	0	498	23	21	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37230015--37230419	47	8.6	47	93	1	657	33	8	29	29	1.86
37232799--37232967	40	4.2	41	85	5	229	25	26	23	24	2.00
37240890--37241055	40	4.2	38	74	17	124	24	27	24	24	2.00
37240907--37241055	40	3.7	41	81	6	187	24	27	24	23	2.00
37243858--37244110	129	2.0	130	88	2	384	27	17	18	35	1.94
37247197--37247274	28	2.8	28	84	7	104	34	21	19	24	1.96
37247197--37247285	28	3.2	28	79	3	90	34	23	17	23	1.96
37254960--37255074	28	4.2	27	86	7	160	35	21	22	20	1.96
37257524--37257676	27	5.7	27	91	0	225	32	15	15	36	1.89
37257524--37257676	54	2.8	54	91	0	252	32	15	15	36	1.89
37257668--37257781	27	4.2	27	83	0	129	43	20	17	18	1.88
37257529--37257703	81	2.2	81	80	4	192	34	16	16	32	1.91
37257668--37257781	54	2.1	54	85	0	147	43	20	17	18	1.88
37258125--37258175	18	2.8	19	76	8	61	23	21	17	37	1.94
37266872--37266897	12	2.2	12	100	0	52	15	0	30	53	1.42
37267620--37267790	93	1.8	93	92	0	288	21	21	29	28	1.98
37267624--37267795	46	3.7	46	77	13	190	21	20	28	29	1.98
37270479--37270854	182	2.1	182	85	4	508	25	29	21	23	1.99
37272731--37272756	11	2.4	11	100	0	52	50	7	42	0	1.31
37273417--37273465	18	2.7	18	93	0	80	36	0	8	55	1.30
37273419--37273466	3	16.0	3	82	0	60	35	0	6	58	1.23
37273419--37273466	12	4.0	12	91	0	69	35	0	6	58	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37273606--37273677	24	2.9	24	78	15	67	44	0	22	33	1.53
37273821--37273916	39	2.5	39	80	6	108	20	23	28	27	1.99
37274555--37274583	13	2.2	13	100	0	58	34	0	27	37	1.57
37280424--37280449	11	2.4	11	100	0	52	50	7	42	0	1.31
37281112--37281160	18	2.7	18	93	0	80	36	0	8	55	1.30
37281114--37281164	3	17.0	3	83	0	66	35	0	5	58	1.22
37281114--37281164	12	4.2	12	92	0	75	35	0	5	58	1.22
37281305--37281376	24	2.9	24	78	15	67	44	0	22	33	1.53
37281520--37281615	39	2.5	39	80	6	108	20	23	28	27	1.99
37284240--37284390	43	3.5	43	80	2	160	27	15	25	31	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250