genome.fa.s9.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  17  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4923606--4923756	48	3.0	52	83	8	195	22	13	9	54	1.68
4924383--4924507	64	2.0	64	90	3	198	29	15	16	39	1.89
4924683--4924867	45	4.2	44	69	8	124	24	16	28	30	1.96
4924574--4925013	132	3.3	132	88	1	643	26	20	26	27	1.99
4924665--4925088	131	3.2	130	83	5	374	27	20	25	27	1.99
4925191--4925701	88	5.8	88	87	1	684	26	22	22	28	1.99
4925197--4925684	44	11.1	44	62	13	146	26	23	22	28	1.99
4925194--4925701	264	1.9	264	89	1	777	26	22	23	28	1.99
4925229--4925766	264	2.0	264	84	2	715	27	22	21	27	1.99
4925722--4926019	44	6.6	44	73	9	215	29	20	23	26	1.99
4925849--4925950	51	2.0	52	80	5	118	36	22	17	23	1.95
4927475--4927522	17	2.8	17	87	3	60	20	0	6	72	1.05
4928554--4928814	126	2.1	126	86	3	364	28	14	16	40	1.88
4928570--4928872	126	2.4	126	81	4	317	26	15	17	41	1.88
4938075--4938344	104	2.6	105	82	3	296	25	21	31	21	1.98
4939128--4939175	25	1.9	25	86	0	69	8	27	12	52	1.67
4941987--4942061	19	4.1	19	86	8	111	38	9	13	38	1.77
4942008--4942045	17	2.5	15	80	19	51	42	7	15	34	1.76
4941789--4942579	262	3.0	262	96	1	1426	40	17	14	27	1.88
4942249--4942323	19	4.1	19	91	8	129	37	10	14	37	1.81
4942512--4942567	18	3.5	15	81	18	60	37	10	16	35	1.83
4942510--4942588	35	2.2	37	86	13	121	37	10	16	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4942510--4942581	19	3.9	19	89	10	123	37	11	15	36	1.83
4942510--4942604	17	4.8	22	84	12	79	36	9	15	37	1.80
4942871--4942905	18	2.0	17	88	5	52	31	0	0	68	0.90
4945387--4945470	26	3.2	25	91	6	132	35	4	23	35	1.76
4946923--4946985	26	2.3	27	89	5	92	31	25	11	31	1.91
4947090--4947202	27	4.2	27	81	3	111	17	23	21	37	1.94
4959926--4959966	21	2.0	21	90	0	64	19	29	21	29	1.98
4964715--4964755	21	2.0	21	90	0	64	19	29	21	29	1.98
4971291--4971462	86	2.0	86	88	4	258	49	5	21	23	1.71
4972150--4972178	15	2.0	15	93	6	51	27	20	17	34	1.95
4972171--4972479	164	1.9	165	87	4	464	32	15	16	35	1.90
4973534--4973598	34	1.9	34	87	6	96	27	12	9	50	1.70
4974884--4974937	20	2.6	22	83	13	62	55	1	1	40	1.21
4975935--4975962	8	3.5	8	100	0	56	10	0	0	89	0.49
4984536--4984841	133	2.3	133	86	2	418	26	20	26	26	1.99
4987835--4988310	131	3.6	131	79	6	482	28	17	18	35	1.94
4989823--4989882	24	2.5	24	83	2	75	58	30	6	5	1.45
4994540--4994682	53	2.8	51	79	7	137	42	19	24	13	1.87
5003041--5003268	72	3.2	71	69	18	209	31	19	15	33	1.93
5005677--5005725	3	16.3	3	100	0	98	67	0	0	32	0.91
5007010--5007172	88	1.9	88	93	2	283	44	5	23	26	1.75
5008138--5008187	28	1.9	24	84	15	64	32	2	0	66	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5008209--5008263	16	3.4	16	94	2	92	41	0	0	58	0.98
5012144--5012203	30	2.0	30	83	6	77	30	5	5	60	1.40
5013194--5013291	50	2.0	50	93	0	169	25	28	13	32	1.93
5014274--5014310	11	3.3	11	88	3	56	56	0	0	43	0.99
5018824--5018907	26	3.2	26	96	0	150	33	4	25	36	1.77
5022587--5022627	17	2.4	17	84	15	50	19	7	2	70	1.22
5022663--5022755	3	30.0	3	70	18	57	30	3	5	61	1.34
5022712--5022753	16	2.6	16	88	7	59	28	2	4	64	1.26
5023064--5023118	21	2.5	22	77	20	60	27	9	0	63	1.24
5023258--5023318	16	3.6	16	72	12	50	29	4	3	62	1.32
5023380--5023470	25	3.6	25	74	10	78	34	3	3	59	1.30
5029560--5029718	78	2.0	78	97	0	300	31	13	23	31	1.93
5035152--5035231	41	1.9	42	89	5	126	50	15	22	12	1.77
5036142--5036352	72	2.8	72	82	7	228	32	17	22	27	1.96
5036347--5036381	14	2.5	14	90	0	61	37	14	0	48	1.44
5036444--5036470	14	1.9	14	100	0	54	29	14	0	55	1.40
5036267--5036718	90	5.1	90	89	3	614	30	17	18	33	1.94
5036359--5036842	179	2.9	161	82	8	499	30	16	19	33	1.94
5036449--5037012	251	2.3	247	82	4	650	28	16	20	34	1.94
5036872--5037110	73	3.2	73	80	7	250	24	13	23	38	1.91
5037093--5037145	23	2.3	23	81	9	63	15	1	1	81	0.87
5037109--5037145	7	4.9	8	90	6	51	13	0	0	86	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5037110--5037136	7	3.9	7	100	0	54	11	0	0	88	0.50
5039897--5040470	144	4.0	144	95	0	999	28	23	14	32	1.95
5045578--5045617	17	2.3	18	86	4	55	72	7	15	5	1.24
5046205--5046229	8	3.1	8	100	0	50	24	0	0	76	0.80
5057298--5057340	18	2.4	18	80	7	52	32	2	0	65	1.06
5060409--5060492	26	3.2	26	96	0	150	36	25	4	33	1.77
5060942--5060993	19	2.8	19	91	5	81	57	38	0	3	1.17
5061999--5062030	15	2.0	17	88	11	50	31	0	6	62	1.20
5062632--5062676	17	2.6	18	89	10	76	31	8	8	51	1.64
5067859--5068391	269	2.0	269	86	0	744	36	18	20	23	1.95
5071114--5071355	116	2.0	124	82	8	304	25	14	21	39	1.91
5071230--5071424	72	2.7	71	84	4	239	25	14	22	37	1.92
5071202--5071734	252	2.1	252	98	0	1021	26	15	20	36	1.93
5071378--5071535	54	2.9	53	83	2	199	27	15	17	38	1.91
5071487--5071676	72	2.6	71	84	4	245	26	15	22	35	1.94
5071454--5072620	315	3.7	315	97	0	2178	26	15	21	36	1.93
5071652--5071871	116	1.9	117	87	2	327	24	15	23	36	1.94
5071802--5071991	72	2.6	71	82	4	227	26	14	23	35	1.93
5071967--5072184	115	1.9	116	86	2	314	25	16	22	35	1.94
5072116--5072305	72	2.6	71	83	4	236	25	15	23	35	1.94
5072281--5072500	116	1.9	117	87	2	327	25	15	22	36	1.94
5072444--5073682	74	16.5	74	79	7	1157	31	16	19	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5072444--5073682	221	5.5	223	84	5	1559	31	16	19	32	1.94
5073103--5073677	164	3.7	156	79	9	551	31	16	19	33	1.93
5072431--5073677	535	2.4	517	85	5	1639	30	16	19	33	1.94
5074208--5074242	16	2.2	16	100	0	70	34	14	22	28	1.93
5074529--5074579	18	2.8	18	93	0	84	58	37	0	3	1.16
5075570--5075601	15	2.0	17	88	11	50	31	0	6	62	1.20
5076205--5076249	17	2.6	18	89	10	76	31	8	8	51	1.64
5082893--5083482	144	4.1	144	97	0	1110	34	15	19	30	1.93
5082893--5083482	287	2.1	288	97	0	1110	34	15	19	30	1.93
5083408--5083549	72	2.0	72	97	0	266	30	11	21	36	1.89
5084157--5084263	15	7.2	15	67	14	69	27	20	7	44	1.78
5084147--5084269	30	4.1	30	89	3	185	26	22	6	43	1.77
5084147--5084269	59	2.0	61	89	3	187	26	22	6	43	1.77
5088838--5088931	30	3.1	30	93	1	152	25	25	6	42	1.78
5088848--5088925	15	5.2	15	70	11	70	25	23	7	43	1.80
5091193--5091266	10	7.3	10	74	8	60	60	1	2	35	1.19
5092174--5092228	24	2.2	25	79	17	62	38	10	27	23	1.88
5094669--5094710	21	2.0	21	85	0	57	38	9	7	45	1.64
5094964--5095032	20	3.5	19	71	15	59	33	5	4	56	1.43
5094990--5095080	45	2.0	47	81	12	109	34	5	4	56	1.43
5095504--5095593	48	1.9	48	82	13	116	34	7	10	47	1.66
5115651--5115684	6	5.5	6	89	6	50	82	11	0	5	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5117148--5117183	3	12.0	3	100	0	72	33	0	0	66	0.92
5117895--5117941	24	1.9	25	86	4	69	59	10	6	23	1.53
5120076--5120800	144	5.0	144	93	0	1171	31	16	24	27	1.96
5122905--5122951	24	2.0	23	84	12	60	53	4	6	36	1.46
5126674--5126995	144	2.2	144	87	2	450	32	17	22	27	1.96
5126965--5127026	31	2.0	31	93	0	106	37	20	11	30	1.88
5126821--5127161	174	2.0	175	85	2	472	31	17	21	29	1.96
5126677--5127314	318	2.0	319	89	2	978	31	16	22	28	1.96
5126996--5127423	144	3.0	144	88	1	653	30	15	24	29	1.95
5126996--5127477	144	3.4	144	83	5	582	30	15	23	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250