genome.fa.s9.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  144  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46648730--46648985	27	9.4	27	75	9	144	40	20	8	30	1.83
46648730--46648923	54	3.6	54	76	6	171	40	22	8	28	1.83
46648744--46648895	27	5.7	26	80	4	151	42	21	7	27	1.80
46648744--46648895	80	1.9	80	88	0	232	42	21	7	27	1.80
46649039--46649125	27	3.2	27	83	3	104	33	18	26	21	1.96
46649929--46650065	26	5.3	26	88	3	181	27	20	24	27	1.99
46650263--46650341	31	2.5	31	91	0	122	30	17	22	29	1.97
46656856--46656889	18	1.9	17	94	5	59	41	8	17	32	1.80
46660713--46660772	6	10.0	6	73	7	50	73	1	3	21	1.07
46662657--46662800	55	2.6	55	71	0	144	13	25	31	29	1.93
46668709--46668913	53	3.8	54	83	1	223	23	23	17	34	1.96
46668720--46668908	55	3.5	54	83	3	220	22	23	18	34	1.96
46668720--46668922	54	3.8	54	82	4	221	23	23	17	35	1.95
46668895--46669016	47	2.6	47	89	0	181	27	24	12	36	1.91
46668988--46669143	47	3.4	45	77	9	143	21	24	21	33	1.97
46671345--46671413	29	2.4	29	95	0	129	11	34	27	26	1.91
46672920--46672963	22	2.0	23	86	13	65	68	2	9	20	1.28
46686747--46686867	28	4.2	29	79	2	138	28	13	28	30	1.94
46690561--46690599	16	2.4	16	91	0	69	48	25	17	7	1.74
46690818--46690924	29	3.8	29	88	2	155	25	14	31	28	1.94
46690816--46690924	57	1.9	57	88	3	166	25	13	31	29	1.94
46693497--46693555	22	2.6	22	81	7	66	37	18	20	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46701074--46701204	47	2.8	48	78	14	157	22	19	27	30	1.98
46707961--46708493	47	11.3	47	97	0	985	30	28	8	32	1.86
46717429--46717600	6	27.8	6	74	16	129	48	14	18	18	1.81
46717429--46717600	19	9.3	18	71	17	129	48	14	18	18	1.81
46717431--46717516	37	2.3	37	85	0	118	48	16	17	17	1.81
46717471--46717537	25	2.7	25	88	0	98	47	14	19	17	1.82
46717434--46717599	62	2.7	62	93	0	278	48	15	18	18	1.82
46717521--46717600	25	3.2	25	85	5	101	47	13	18	20	1.82
46717975--46718222	27	9.2	27	82	6	252	25	16	20	37	1.93
46717974--46718222	54	4.6	55	84	5	303	25	16	20	36	1.94
46717948--46718222	134	2.1	134	84	4	349	25	17	20	36	1.94
46718228--46718643	27	15.4	27	80	4	309	37	8	21	32	1.84
46718228--46718643	54	7.7	54	78	4	356	37	8	21	32	1.84
46718228--46718643	107	3.9	107	75	5	309	37	8	21	32	1.84
46718281--46718482	55	3.7	53	72	9	138	34	9	20	34	1.86
46718152--46718509	191	1.9	188	83	5	470	34	9	21	34	1.86
46718623--46718767	27	5.4	27	76	8	118	31	8	20	39	1.83
46718605--46718767	54	3.0	52	73	10	132	33	8	21	36	1.84
46718649--46718788	27	5.3	27	78	8	90	32	8	19	40	1.82
46718622--46718795	53	3.3	53	78	6	181	31	8	20	39	1.83
46720722--46720755	18	1.9	17	88	5	50	52	14	11	20	1.73
46720743--46720965	6	36.3	6	77	12	213	47	15	17	18	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46720800--46720964	62	2.7	62	96	0	294	47	15	19	17	1.82
46720744--46720956	37	5.8	37	78	10	165	47	15	17	18	1.83
46721380--46721627	27	9.3	27	81	3	252	25	18	20	35	1.95
46721649--46721794	27	5.4	27	76	6	118	33	9	17	39	1.83
46721647--46721822	54	3.3	53	79	7	203	33	9	18	38	1.84
46728676--46728801	46	2.7	46	89	4	175	23	23	23	30	1.99
46733906--46733973	25	2.7	25	73	8	66	30	19	19	30	1.96
46733951--46734019	25	2.8	24	74	10	68	33	21	23	21	1.97
46733910--46734019	50	2.2	49	80	1	112	30	20	21	26	1.98
46735252--46735300	25	2.0	25	84	8	64	30	0	18	51	1.47
46739002--46739192	27	7.1	27	80	4	199	18	14	23	43	1.87
46739040--46739190	80	1.9	79	86	4	214	17	12	27	42	1.86
46743010--46743208	27	7.4	27	86	1	229	35	18	20	25	1.95
46743010--46743209	80	2.5	81	84	0	258	35	18	20	25	1.95
46743950--46744009	27	2.3	26	85	2	75	21	21	21	35	1.96
46768057--46768225	46	3.7	46	77	12	184	22	18	28	30	1.98
46768054--46768224	93	1.8	93	91	2	281	22	19	28	29	1.98
46772448--46772486	18	2.1	19	90	4	62	35	15	25	23	1.94
46772420--46772518	45	2.2	46	83	1	119	36	19	19	25	1.95
46772466--46772591	27	5.0	26	71	20	97	34	18	23	24	1.96
46772409--46772591	72	2.5	73	81	9	221	34	18	21	25	1.96
46772519--46772564	19	2.4	19	88	0	65	32	17	26	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46772492--46772587	46	2.1	46	86	5	133	34	17	23	23	1.96
46773242--46773292	27	1.9	26	84	4	66	17	27	19	35	1.94
46774337--46774548	27	7.9	27	84	6	207	22	16	20	41	1.91
46774337--46774493	80	2.0	81	87	1	226	23	16	19	40	1.91
46774337--46774560	54	4.1	54	85	5	240	22	16	19	41	1.90
46774337--46774560	81	2.8	81	85	5	267	22	16	19	41	1.90
46774980--46775072	7	12.9	7	72	22	59	46	2	1	50	1.20
46775015--46775071	27	2.1	27	90	0	87	49	0	0	50	1.00
46775018--46775073	7	8.4	7	78	11	64	51	0	0	48	1.00
46776242--46776309	22	3.0	22	85	6	93	16	22	19	42	1.89
46783126--46783241	43	2.7	43	78	0	142	29	16	23	31	1.96
46785443--46785468	10	2.6	10	100	0	52	50	0	15	34	1.45
46795942--46795978	18	2.1	18	100	0	74	67	5	10	16	1.38
46796532--46796586	23	2.4	23	93	3	94	47	10	14	27	1.78
46796864--46796904	19	2.2	19	100	0	82	39	4	9	46	1.58
46808029--46808214	103	1.8	103	87	0	282	24	27	29	18	1.98
46813642--46813704	28	2.2	28	97	0	117	68	9	12	9	1.40
46824071--46824284	40	5.4	39	79	10	229	25	28	21	24	1.99
46824069--46824281	80	2.7	80	85	7	283	26	27	21	24	1.99
46830408--46830554	40	3.7	40	83	5	120	25	27	21	25	2.00
46830454--46830634	80	2.3	80	83	9	219	27	27	20	23	1.99
46830451--46830634	40	4.6	40	81	7	196	28	27	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46905075--46905485	47	8.4	47	80	9	405	33	7	28	30	1.85
46905115--46905249	63	2.1	64	86	5	195	35	5	25	33	1.79
46905077--46905296	110	2.0	110	90	1	343	33	5	27	33	1.81
46905075--46905485	141	2.7	157	85	6	458	33	7	28	30	1.85
46907506--46907608	43	2.4	43	100	0	206	22	15	35	26	1.94
46907590--46907663	29	2.6	29	89	4	105	25	16	32	25	1.96
46908053--46908191	40	3.5	40	91	2	217	25	23	26	24	2.00
46907976--46908191	119	1.8	119	82	6	276	25	22	27	24	2.00
46907976--46908219	119	2.0	120	80	8	266	25	22	27	24	2.00
46911898--46912372	47	10.1	47	95	1	799	32	9	29	28	1.88
46911898--46912372	234	2.0	236	92	1	801	32	9	29	28	1.88
46912491--46912569	37	2.1	37	88	4	115	25	18	30	25	1.98
46920915--46921105	56	3.4	55	86	10	262	34	21	14	29	1.93
46921719--46921749	15	2.1	15	93	0	53	54	25	0	19	1.44
46933717--46933896	40	4.5	40	93	2	292	26	27	23	23	2.00
46941434--46941652	40	5.5	40	87	2	309	26	26	24	23	2.00
46968819--46968872	27	2.0	26	92	3	90	33	14	16	35	1.90
46976677--46976733	27	2.1	27	93	0	96	29	19	17	33	1.95
46978135--46978338	46	4.4	46	77	10	227	23	21	27	27	1.99
46980111--46980162	27	1.9	27	92	0	86	28	7	15	48	1.73
46981400--46981434	8	4.4	8	100	0	70	14	0	51	34	1.42
46987609--46987649	22	1.9	21	90	5	64	51	4	0	43	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46991903--46991949	20	2.3	20	78	7	51	42	0	4	53	1.20
46991917--46991957	14	3.1	14	73	20	52	41	0	0	58	0.98
46993314--46993359	12	3.7	13	80	13	53	63	6	0	30	1.20
46993839--46993959	22	5.6	22	75	9	88	59	28	2	9	1.42
46993840--46993904	20	3.1	20	84	6	76	61	24	3	10	1.43
46994245--46994622	44	8.7	43	72	15	194	26	23	19	30	1.98
46994302--46994644	88	3.9	88	78	8	419	26	23	19	30	1.98
46994257--46994497	44	5.6	43	77	9	231	26	23	19	29	1.98
46994257--46994585	175	1.9	173	93	2	570	26	23	19	30	1.98
46994257--46994622	175	2.1	172	87	5	513	26	23	19	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250