genome.fa.s9.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  108  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34748157--34748201	10	4.4	10	86	5	63	37	15	15	31	1.89
34748257--34748314	25	2.3	25	81	0	80	27	25	18	27	1.98
34755765--34755815	25	2.0	25	81	7	59	29	19	19	31	1.97
34755859--34755903	10	4.4	10	91	5	72	35	17	15	31	1.92
34755859--34755903	21	2.2	20	92	4	72	35	17	15	31	1.92
34755948--34756016	25	2.8	25	88	0	93	27	24	21	26	1.99
34757614--34757681	30	2.2	31	84	7	86	29	17	5	47	1.71
34760084--34760442	46	7.8	46	84	2	418	22	23	14	39	1.91
34760366--34760485	45	2.7	45	84	0	132	21	24	17	36	1.94
34763143--34763215	20	3.7	19	75	10	67	57	2	0	39	1.13
34763422--34763480	30	1.9	31	86	3	84	28	18	3	49	1.64
34763422--34763490	30	2.3	31	82	7	79	28	17	5	47	1.70
34769853--34769936	11	7.7	10	79	19	80	66	8	9	15	1.43
34769864--34769964	11	8.6	12	76	17	79	66	5	9	17	1.41
34769864--34769940	22	3.5	22	87	10	104	64	6	10	18	1.45
34769863--34769936	33	2.2	33	90	4	114	66	8	9	16	1.44
34769920--34769965	13	3.5	13	79	5	56	69	4	8	17	1.31
34769920--34769968	14	3.6	14	77	2	55	67	4	8	20	1.34
34769908--34769971	27	2.4	27	79	5	78	67	3	10	18	1.34
34772067--34772102	16	2.2	17	90	5	56	83	0	11	5	0.80
34774989--34775625	100	6.4	98	83	5	749	29	25	18	25	1.98
34775002--34775633	150	4.2	150	94	0	1052	29	25	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34778720--34778904	40	4.7	40	82	6	207	24	27	23	24	2.00
34778748--34778904	79	2.0	80	83	6	203	24	28	22	24	2.00
34784843--34785018	27	6.6	27	83	6	178	29	28	15	26	1.96
34784843--34785018	55	3.3	54	81	7	198	29	28	15	26	1.96
34790126--34790306	78	2.3	81	82	9	214	24	27	23	24	2.00
34790105--34790306	40	5.1	40	81	9	220	24	27	22	24	2.00
34805923--34805948	10	2.6	10	100	0	52	61	26	0	11	1.30
34807113--34807141	15	1.9	15	100	0	58	37	20	0	41	1.53
34809056--34809117	27	2.3	27	83	2	81	25	24	17	32	1.97
34809152--34809229	27	2.9	27	94	0	138	30	21	3	43	1.71
34810941--34811070	29	4.5	29	76	3	136	24	11	21	42	1.86
34819249--34819344	24	4.0	24	89	6	142	29	21	20	28	1.98
34819270--34819342	23	3.1	23	96	2	128	30	20	20	28	1.98
34819393--34819459	20	3.3	20	93	0	116	32	20	11	34	1.90
34819393--34819448	11	5.5	11	71	16	57	32	19	12	35	1.89
34823923--34824062	73	1.9	73	83	0	181	28	14	23	33	1.94
34825905--34825939	13	2.7	13	86	0	52	48	8	5	37	1.58
34829976--34830010	11	3.3	11	88	8	54	42	0	5	51	1.25
34837664--34837709	23	2.0	23	100	0	92	30	13	8	47	1.72
34846868--34847063	50	3.9	49	79	1	212	25	19	27	27	1.99
34853374--34853499	43	2.9	44	74	15	122	33	26	16	23	1.96
34854543--34854655	39	2.9	39	89	0	163	27	28	19	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34855861--34856254	27	14.6	27	75	8	176	39	19	8	32	1.82
34855980--34856189	80	2.6	81	80	3	244	41	20	8	30	1.81
34855980--34856174	54	3.6	54	79	4	214	41	21	7	29	1.80
34856211--34856262	27	1.9	27	92	7	88	42	11	11	34	1.77
34856317--34856407	27	3.4	27	83	8	114	35	19	25	19	1.96
34857206--34857393	26	7.3	26	86	4	258	27	21	23	27	1.99
34857206--34857393	52	3.7	52	93	3	312	27	21	23	27	1.99
34857599--34857677	31	2.5	31	95	0	140	30	18	24	26	1.98
34863981--34864155	46	3.8	46	75	13	187	29	29	20	21	1.98
34863988--34864159	93	1.8	93	92	0	290	28	29	20	22	1.98
34865444--34865523	27	3.0	27	80	5	92	33	12	15	38	1.84
34865447--34865529	26	3.2	26	78	11	80	30	10	19	39	1.86
34868483--34868511	15	2.0	15	93	6	51	20	0	6	72	1.07
34869816--34870372	185	3.0	184	88	3	814	40	17	8	33	1.80
34874465--34874511	21	2.4	18	80	19	51	40	0	4	55	1.19
34874512--34874575	27	2.5	27	80	12	73	40	1	0	57	1.08
34876016--34876053	10	3.8	10	93	6	60	71	5	0	23	1.07
34876027--34876081	23	2.3	24	76	17	62	69	7	0	23	1.14
34880604--34880726	63	2.0	63	95	0	219	34	17	15	32	1.91
34897558--34897587	16	1.9	16	93	6	53	53	0	0	46	1.00
34901210--34901269	28	2.1	28	87	0	84	31	28	6	33	1.83
34906630--34906692	28	2.2	28	88	0	90	31	28	6	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34906967--34907037	38	1.9	38	83	8	94	47	0	5	46	1.26
34907240--34907290	16	3.2	16	84	15	70	23	31	9	35	1.87
34907870--34907913	22	2.1	21	91	8	72	43	2	6	47	1.42
34907913--34908019	53	2.0	53	85	3	144	40	4	26	28	1.76
34912140--34912244	52	2.0	52	96	0	192	20	12	32	34	1.90
34916903--34916962	29	2.1	29	93	6	104	50	25	1	23	1.59
34917267--34917328	31	2.1	30	82	17	76	29	17	8	45	1.77
34917485--34917533	25	2.0	25	95	0	89	28	18	24	28	1.98
34917485--34917546	25	2.5	25	84	5	81	27	17	25	29	1.98
34922857--34922905	21	2.3	21	89	0	80	36	18	12	32	1.88
34922843--34922917	10	7.1	11	77	7	66	33	17	14	34	1.90
34923029--34923158	27	4.8	27	85	0	170	26	23	17	33	1.96
34923029--34923158	54	2.4	54	88	0	188	26	23	17	33	1.96
34923154--34923447	27	10.9	26	78	6	110	30	7	22	38	1.83
34923210--34923441	54	4.3	54	82	3	270	30	7	21	40	1.81
34923262--34923451	27	7.0	27	84	3	222	32	7	20	40	1.80
34923209--34923441	81	2.9	80	81	3	270	30	7	21	40	1.81
34923613--34923647	17	2.0	18	88	5	54	17	31	28	22	1.96
34927049--34927135	32	2.8	32	84	5	97	45	6	4	42	1.51
34929080--34929315	116	2.0	116	95	0	427	36	13	10	39	1.79
34931476--34931625	77	1.9	77	89	2	230	26	20	14	38	1.91
34933311--34933351	7	5.9	7	94	0	73	58	0	12	29	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34936604--34936745	39	3.6	39	91	0	230	27	26	23	22	2.00
34938957--34939009	25	2.1	25	100	0	106	43	3	24	28	1.71
34943107--34943147	7	5.9	7	100	0	82	58	0	14	26	1.37
34952045--34952156	55	2.0	55	96	0	206	23	20	17	38	1.93
34957337--34957443	42	2.5	42	75	3	108	42	14	21	20	1.88
34958569--34958605	18	2.1	18	100	0	74	48	10	5	35	1.61
34964054--34964086	11	3.0	11	100	0	66	36	27	9	27	1.87
34964279--34964315	19	1.9	19	88	0	56	59	10	2	27	1.44
34965191--34965236	22	2.1	22	100	0	92	30	28	4	36	1.76
34968525--34968572	24	2.0	23	84	4	60	35	16	29	18	1.93
34968640--34968722	26	3.3	26	86	3	107	38	24	20	16	1.93
34980234--34980375	47	3.0	47	94	1	250	28	11	14	45	1.81
34981180--34981353	44	4.0	43	82	6	190	25	21	27	25	1.99
34981179--34981386	43	4.8	44	79	10	173	26	20	26	26	1.99
34981880--34981912	16	1.9	18	88	11	52	24	15	12	48	1.78
34987723--34987805	25	3.3	24	74	3	85	31	20	28	19	1.97
34987897--34987977	25	3.2	26	77	6	78	38	19	20	20	1.94
34987919--34987986	25	2.7	25	79	6	75	39	17	23	19	1.92
34991878--34991951	26	2.8	26	93	4	123	56	0	0	43	0.99
34992138--34992189	25	2.1	25	100	0	104	42	15	3	38	1.65
34992194--34992236	20	2.1	21	86	4	61	23	4	0	72	1.04
34992205--34992236	16	1.9	16	93	6	55	25	0	0	75	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34992538--34992573	18	1.9	19	88	5	56	33	0	0	66	0.92
34994826--34994877	20	2.6	20	81	0	68	46	5	11	36	1.64
35005833--35005948	58	2.0	58	91	3	189	45	18	9	26	1.79
35009410--35009578	42	4.0	42	85	2	214	30	13	24	31	1.93
35009680--35009704	12	2.1	12	100	0	50	36	16	24	24	1.94
35014176--35014418	47	5.1	47	89	3	335	31	11	30	26	1.91
35014228--35014302	23	3.2	23	62	23	57	29	12	32	26	1.92
35014395--35014482	46	1.9	46	85	0	122	31	9	32	26	1.87
35017950--35018103	34	4.5	34	82	1	157	28	12	18	40	1.87
35017954--35018104	68	2.2	69	84	4	191	29	13	18	39	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250