genome.fa.s9.2.7.7.80.10.50.1000.210.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  210  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65497491--65497713	42	5.3	42	80	3	243	47	13	19	19	1.83
65498927--65498974	20	2.4	21	83	10	57	50	4	2	43	1.33
65500369--65500638	3	88.3	3	67	21	109	31	5	3	58	1.38
65500808--65500847	3	13.7	3	89	5	64	32	0	2	65	1.06
65522159--65522222	31	2.1	31	90	0	101	25	23	15	35	1.94
65522428--65522569	23	6.1	24	91	7	240	28	21	21	29	1.98
65522432--65522570	47	3.0	47	92	4	230	28	21	22	28	1.99
65522422--65522569	70	2.1	68	93	3	251	27	22	20	29	1.99
65522627--65522683	9	5.9	9	73	15	51	35	21	8	35	1.84
65522615--65522685	20	3.5	20	94	0	124	32	21	11	35	1.89
65522620--65522674	11	5.4	11	70	16	55	30	20	12	36	1.90
65522722--65522769	25	1.9	25	86	0	69	25	16	25	33	1.96
65528493--65528528	15	2.5	14	86	8	54	22	11	0	66	1.22
65532499--65532592	40	2.4	39	82	8	111	37	38	10	13	1.80
65538165--65538224	24	2.5	24	88	0	84	28	28	16	26	1.97
65540773--65540809	19	1.9	19	88	0	56	24	5	8	62	1.44
65540582--65540803	3	72.7	3	68	20	97	31	5	4	59	1.38
65540533--65540867	183	1.8	186	92	5	572	30	5	4	59	1.40
65541038--65541091	3	17.7	3	88	3	81	35	0	1	62	1.06
65553372--65553424	27	2.0	27	100	0	106	30	11	20	37	1.88
65553399--65553845	72	6.0	72	82	6	455	32	15	18	33	1.93
65553434--65554173	151	4.9	147	79	10	773	31	16	20	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65553959--65554171	73	3.0	72	82	8	209	29	17	22	30	1.96
65553888--65554173	71	4.0	72	84	6	339	30	17	20	31	1.96
65554165--65554193	14	2.0	15	93	6	51	13	31	6	48	1.69
65554037--65554365	179	1.8	177	86	5	475	30	17	22	30	1.97
65556161--65556486	179	1.8	177	91	5	541	30	5	3	59	1.39
65556389--65556423	13	2.8	13	86	4	54	28	5	2	62	1.32
65556210--65556421	3	69.7	3	67	22	88	31	5	3	59	1.37
65556653--65556712	3	20.7	3	80	16	65	33	0	1	65	1.03
65556653--65556695	14	3.0	14	93	3	68	30	0	2	67	1.03
65560117--65560164	17	2.9	17	82	14	57	66	2	0	31	1.03
65560103--65560170	17	3.9	18	72	16	54	63	2	1	32	1.18
65566303--65566340	15	2.4	17	86	8	53	28	0	2	68	1.03
65567027--65567083	27	2.2	26	81	9	62	28	7	0	64	1.19
65572825--65572863	2	19.5	2	89	10	62	48	0	2	48	1.15
65575229--65575260	15	2.1	15	94	0	55	62	6	0	31	1.20
65575512--65575554	11	3.9	11	81	0	50	60	4	0	34	1.17
65576044--65576079	11	3.2	12	88	11	58	47	0	52	0	1.00
65576170--65576223	13	4.0	13	76	9	54	24	0	3	72	1.01
65576276--65576314	17	2.3	17	86	8	53	71	0	10	17	1.12
65583051--65583076	11	2.4	11	100	0	52	69	0	0	30	0.89
65584656--65584689	17	2.0	17	94	0	59	44	50	0	5	1.26
65589295--65589328	17	2.0	17	94	0	59	44	50	0	5	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65592954--65592978	3	8.3	3	100	0	50	64	0	36	0	0.94
65595332--65595417	35	2.5	35	81	9	106	45	0	4	50	1.22
65595359--65595419	24	2.5	23	80	15	61	45	0	4	49	1.23
65595770--65595800	16	2.0	15	93	6	53	70	0	29	0	0.87
65602851--65602916	13	5.1	13	76	7	62	37	25	4	31	1.76
65605723--65605869	43	3.4	44	85	4	192	27	14	25	31	1.95
65614288--65614384	30	3.1	30	87	11	149	22	4	16	56	1.57
65614288--65614392	34	3.2	34	93	5	173	22	4	16	56	1.59
65614963--65615005	15	2.8	15	80	16	52	27	2	2	67	1.15
65615630--65615671	21	2.0	21	86	4	59	33	21	23	21	1.97
65615820--65615856	19	1.9	19	100	0	74	21	37	18	21	1.94
65621564--65621614	19	2.7	18	79	8	57	13	7	5	72	1.26
65622050--65622089	21	1.9	21	89	0	62	30	15	10	45	1.78
65625861--65625913	16	3.1	16	84	15	63	69	0	1	28	0.99
65628220--65628280	26	2.3	26	88	0	86	24	18	16	40	1.90
65634505--65634718	52	4.3	51	75	13	162	23	14	28	32	1.95
65639450--65639514	33	2.0	33	96	0	121	46	10	16	26	1.80
65645776--65645831	23	2.4	24	80	11	64	39	1	16	42	1.58
65645923--65645979	19	3.1	19	85	7	73	56	8	0	35	1.31
65648572--65648609	18	2.1	18	90	9	60	28	5	5	60	1.40
65648845--65648904	18	3.3	18	76	17	54	40	3	1	55	1.27
65656676--65656749	39	1.9	38	84	13	98	36	2	4	56	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65670208--65670241	17	2.0	17	94	0	59	44	50	0	5	1.26
65674846--65674879	17	2.0	17	94	0	59	44	50	0	5	1.26
65677991--65678032	20	2.0	20	86	4	57	42	2	4	50	1.36
65691940--65691979	20	2.0	20	95	0	71	17	20	17	45	1.86
65697694--65697729	17	2.1	17	89	0	54	44	22	5	27	1.75
65697717--65697754	17	2.2	17	90	0	58	34	28	5	31	1.80
65699354--65699537	43	4.3	43	90	2	271	27	17	27	27	1.98
65702324--65702400	7	11.4	7	75	14	56	40	2	0	57	1.13
65702330--65702397	22	3.1	22	77	6	68	41	2	0	55	1.15
65702516--65702555	18	2.2	17	86	8	53	37	0	2	60	1.11
65702586--65702636	22	2.3	23	80	12	61	33	3	13	49	1.61
65714540--65714724	94	2.0	94	89	0	280	32	18	22	25	1.97
65714541--65714849	94	3.4	88	79	11	261	30	18	23	26	1.98
65714811--65714893	43	1.9	43	82	7	105	32	18	25	24	1.97
65714795--65715034	133	1.8	131	82	8	308	32	17	24	26	1.97
65714944--65715064	44	2.8	44	89	5	174	27	14	28	29	1.96
65715028--65715091	30	2.1	30	97	0	119	23	17	28	31	1.97
65716523--65716556	15	2.3	15	90	10	52	32	0	0	67	0.91
65716617--65716743	9	13.9	10	68	18	55	37	1	0	59	1.12
65716619--65716738	19	7.1	18	72	20	91	37	1	0	60	1.13
65716863--65716915	17	3.1	17	81	13	56	33	0	1	64	1.05
65716851--65716903	27	2.0	27	85	7	72	28	1	1	67	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65716865--65716919	9	6.0	10	71	25	50	36	0	1	61	1.06
65716944--65716994	22	2.3	23	80	12	61	33	3	13	49	1.61
65718389--65718445	8	6.9	8	76	13	53	57	1	3	36	1.26
65722893--65723020	46	2.8	46	96	2	233	38	14	24	22	1.92
65724321--65724495	46	3.8	46	76	15	189	30	29	19	20	1.97
65724328--65724499	93	1.8	93	93	0	299	30	29	19	20	1.97
65724329--65724515	46	4.0	44	72	16	139	30	28	19	21	1.97
65731817--65731990	46	3.8	46	76	14	196	29	29	20	20	1.98
65731824--65731994	92	1.8	93	93	1	299	28	29	20	21	1.98
65733286--65733479	46	4.2	45	77	2	172	41	14	23	20	1.90
65733309--65733474	91	1.8	90	82	1	197	42	15	22	19	1.89
65733760--65733792	17	2.0	17	94	5	59	51	0	12	36	1.39
65734341--65734386	20	2.3	20	88	0	65	23	34	28	13	1.92
65735561--65735600	18	2.2	18	86	0	53	40	0	5	55	1.22
65735616--65735663	13	3.7	13	77	0	51	72	6	18	2	1.15
65736365--65736439	21	3.4	23	73	14	77	13	21	25	40	1.89
65736423--65736481	29	2.0	29	100	0	118	23	18	20	37	1.94
65739105--65739189	4	20.8	4	73	4	62	5	27	3	63	1.34
65739626--65739676	25	2.0	25	96	0	93	19	21	19	39	1.93
65742469--65742505	4	9.2	4	100	0	74	75	0	24	0	0.80
65746181--65746243	29	2.2	29	94	0	108	36	20	3	39	1.69
65746614--65746767	9	17.6	9	68	15	74	35	1	17	45	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65746641--65746784	34	3.9	34	76	18	135	37	0	15	47	1.46
65746627--65746783	79	2.0	79	91	0	251	36	1	15	46	1.55
65747109--65747142	16	2.1	16	88	0	50	55	8	0	35	1.31
65748045--65748095	25	2.0	25	84	0	66	29	19	43	7	1.79
65748209--65748255	24	2.0	24	95	0	85	40	4	10	44	1.59
65748209--65748250	14	3.3	14	75	25	56	38	4	11	45	1.62
65749782--65749864	40	2.1	39	82	6	96	30	22	15	31	1.95
65750915--65751002	34	2.4	37	87	9	119	46	28	2	22	1.64
65751480--65751676	41	4.8	41	76	6	177	28	15	20	35	1.93
65752185--65752267	31	2.6	31	72	12	80	63	9	2	24	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250